Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.4e-170 602.8 303 100.0
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 7.1e-170 600.5 303 99.7
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.7e-168 595.9 303 99.0
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 8.7e-168 593.6 303 98.3
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 2.5e-167 592.0 303 98.3
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 9.6e-167 590.1 303 97.7
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 6.0e-153 544.3 303 90.4
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 2.3e-152 542.3 303 89.4
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 1.3e-147 526.6 299 87.6
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 4.9e-147 524.6 302 87.4
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 1.9e-146 522.7 299 87.6
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 7.1e-146 520.8 301 85.4
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 7.9e-145 517.3 299 85.3
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 7.9e-145 517.3 299 85.3
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 1.0e-144 516.9 303 84.8
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 1.0e-144 516.9 303 84.8
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 1.3e-144 516.5 303 84.5
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 1.9e-143 512.7 303 83.5
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 2.5e-143 512.3 299 85.6
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 3.3e-143 511.9 302 84.1
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 3.3e-143 511.9 303 84.2
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 1.3e-142 510.0 303 84.5
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 1.6e-142 509.6 299 84.6
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 2.1e-142 509.2 299 83.6
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 2.1e-142 509.2 302 83.8
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 9.0e-141 503.8 303 82.2
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 2.0e-140 502.7 303 82.5
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 1.7e-139 499.6 303 82.8
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 1.7e-139 499.6 303 82.8
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 6.5e-139 497.7 303 80.9
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 1.1e-138 496.9 303 82.2
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 1.4e-138 496.5 303 81.8
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 7.2e-138 494.2 299 82.9
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 7.2e-138 494.2 303 81.8
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 2.7e-137 492.3 303 79.2
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 4.6e-137 491.5 303 81.5
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 1.0e-136 490.3 303 81.8
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 1.8e-136 489.6 303 81.2
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 1.8e-136 489.6 303 81.2
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 1.8e-136 489.6 303 80.9
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 3.9e-136 488.4 303 80.9
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 5.1e-136 488.0 303 79.5
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 4.3e-135 485.0 303 78.9
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 5.7e-135 484.6 303 80.2
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 5.7e-135 484.6 301 80.4
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 3.7e-134 481.9 303 79.5
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 4.8e-134 481.5 303 79.5
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 8.2e-134 480.7 303 79.5
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 2.4e-133 479.2 303 78.9
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 1.5e-132 476.5 303 79.5
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 3.4e-132 475.3 299 79.3
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 1.0e-131 473.8 303 78.2
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 1.3e-131 473.4 299 78.9
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 1.7e-131 473.0 299 78.9
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 2.9e-131 472.2 299 78.9
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 3.8e-131 471.9 303 78.5
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 6.5e-131 471.1 303 75.9
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.9e-130 469.5 295 79.0
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 1.8e-128 463.0 303 75.9
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 5.1e-128 461.5 306 75.8
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 1.5e-127 459.9 299 74.6
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 1.5e-127 459.9 305 75.1
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 3.3e-127 458.8 306 75.8
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 7.4e-127 457.6 302 76.5
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 1.3e-126 456.8 302 75.2
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 2.4e-125 452.6 298 75.8
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 3.1e-125 452.2 305 76.1
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 5.3e-125 451.4 305 76.4
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 7.7e-124 447.6 298 75.2
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 1.0e-123 447.2 298 75.2
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 1.3e-123 446.8 298 74.5
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 2.2e-123 446.0 299 74.2
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 2.9e-123 445.7 298 74.2
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 3.8e-123 445.3 298 73.8
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 8.5e-123 444.1 303 71.9
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 1.9e-122 443.0 306 72.9
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 2.5e-122 442.6 301 72.8
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 4.2e-122 441.8 298 73.5
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 1.2e-121 440.3 298 73.5
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 2.1e-121 439.5 275 80.4
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 2.7e-121 439.1 298 73.5
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 3.6e-121 438.7 298 73.8
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 3.6e-121 438.7 298 73.8
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 4.7e-121 438.3 311 72.3
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 1.8e-120 436.4 299 72.9
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 2.3e-120 436.0 298 73.8
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 3.0e-120 435.6 298 72.8
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 3.0e-120 435.6 298 72.8
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 3.0e-120 435.6 298 72.8
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 6.7e-120 434.5 302 71.5
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 1.5e-119 433.3 302 71.9
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 2.0e-119 433.0 302 72.2
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 3.7e-118 428.7 287 75.3
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 4.8e-118 428.3 306 71.2
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 9.4e-114 414.1 299 70.9
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 1.7e-110 403.3 251 79.7
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 4.8e-110 401.7 249 78.3
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 3.4e-103 379.0 301 65.4
Duzib251G0397 Durio zibethinus HOM05D006135 ORTHO05D007533 9.8e-103 377.5 234 79.5
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 3.1e-101 372.5 299 64.2
Haze_11974 Corylus avellana HOM05D006135 ORTHO05D007533 7.0e-101 371.3 215 85.1
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 1.2e-100 370.5 307 61.6
ClCG08G010310 Citrullus lanatus HOM05D006135 ORTHO05D008017 2.0e-100 369.8 225 81.3
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 7.7e-100 367.9 261 72.0
Nitab4.5_0000100g0120 Nicotiana tabacum HOM05D006135 ORTHO05D007533 1.9e-98 363.2 232 77.6
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 1.6e-97 360.1 249 70.3
SalBow2G1772 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.6e-97 360.1 221 80.1
SalBow6G7020 Salvia bowleyana HOM05D006135 ORTHO05D007533 2.3e-96 356.3 225 78.2
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 1.8e-93 346.7 219 78.5
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 4.5e-92 342.0 255 66.7
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 5.2e-88 328.6 277 60.6
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 3.0e-83 312.8 343 51.3
Nn3g17430 Nelumbo nucifera HOM05D006135 ORTHO05D007533 4.0e-80 302.4 303 56.4
vmacro19077 Vaccinium macrocarpon HOM05D006135 ORTHO05D007533 5.4e-77 292.0 172 79.7
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 6.4e-62 241.9 317 45.7
Oeu025274.1 Olea europaea HOM05D006135 ORTHO05D007533 1.6e-49 200.7 143 74.1
Pp3c8_25320 Physcomitrium patens HOM05D006135 ORTHO05D007533 1.4e-45 187.6 163 60.1
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 1.8e-43 180.6 303 41.3
PRCOL_00001916 Prasinoderma coloniale HOM05D006135 ORTHO05D007533 6.7e-43 178.7 343 36.7
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 2.8e-41 173.3 177 52.5
SEGI_02005 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 2.0e-39 167.2 112 75.0
Dinv16720 Davidia involucrata HOM05D006135 ORTHO05D007533 1.3e-33 147.9 88 76.1
DCAR_030035 Daucus carota HOM05D006135 ORTHO05D007533 3.2e-29 133.3 91 71.4
Os11g0312340 Oryza sativa ssp. japonica HOM05D006135 ORTHO05D007533 1.0e-27 128.3 86 79.1
Lsat_1_v5_gn_2_78301 Lactuca sativa HOM05D006135 ORTHO05D007533 4.3e-26 122.9 89 73.0
Cfa026301 Carpinus fangiana HOM05D006135 ORTHO05D007533 6.3e-25 119.0 318 33.6
AagrBONN_evm.TU.Sc2ySwM_362.1915 Anthoceros agrestis HOM05D006135 ORTHO05D007533 1.1e-24 118.2 86 65.1
HPP92_017676 Vanilla planifolia HOM05D006135 ORTHO05D007533 9.4e-21 105.1 135 46.7
Lalb_Chr17g0339631 Lupinus albus HOM05D006135 ORTHO05D007533 2.3e-19 100.5 64 82.8
SEGI_31918 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 2.4e-16 90.5 68 60.3
Glyma.03G009300 Glycine max HOM05D006135 ORTHO05D007533 1.0e-11 75.1 46 76.1


User provided reference genes

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