Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.6e-227 792.3 392 100.0
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.1e-226 789.6 392 99.5
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.2e-201 706.4 392 92.1
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.6e-201 706.1 392 91.8
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.5e-201 704.9 394 91.9
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 5.2e-189 664.5 392 85.5
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.7e-139 500.0 389 66.1
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 1.0e-128 464.2 388 61.1
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.1e-125 454.1 391 59.6
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 3.0e-120 436.0 397 58.7
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 2.6e-116 422.9 376 56.9
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 3.8e-115 419.1 372 57.3
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 3.2e-114 416.0 372 57.0
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.2e-113 414.1 369 56.9
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.7e-113 412.9 374 55.3
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 5.7e-111 405.2 385 53.5
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 5.3e-109 398.7 366 54.1
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 9.0e-109 397.9 366 56.0
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.2e-105 387.5 369 54.5
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 2.5e-103 379.8 370 50.5
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 3.3e-103 379.4 377 54.9
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 1.3e-102 377.5 370 52.2
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 1.3e-102 377.5 369 52.3
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 2.8e-102 376.3 368 51.4
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 3.7e-102 375.9 370 50.8
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 1.1e-101 374.4 370 50.8
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.4e-101 374.0 377 49.9
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 2.4e-101 373.2 369 48.2
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.9e-101 371.7 375 52.8
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.2e-100 370.9 379 51.5
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.6e-100 369.8 371 52.0
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 4.5e-100 369.0 372 49.5
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 1.0e-99 367.9 375 49.3
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 1.7e-99 367.1 368 53.8
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.2e-99 366.7 371 51.8
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 2.1e-97 360.1 366 53.6
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 6.1e-97 358.6 369 52.8
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 7.9e-97 358.2 367 51.0
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 1.0e-96 357.8 369 49.1
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.8e-96 357.1 372 50.8
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 2.3e-96 356.7 369 51.2
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 8.8e-96 354.8 374 51.3
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.1e-95 354.4 368 48.1
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 2.0e-95 353.6 374 51.1
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 3.3e-95 352.8 371 50.1
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.3e-94 350.9 368 52.2
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.7e-94 350.5 371 48.8
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 2.8e-94 349.7 371 47.7
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 4.8e-94 349.0 373 50.7
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.3e-94 348.6 383 48.8
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 6.3e-94 348.6 371 50.9
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 6.9e-93 345.1 387 46.8
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 1.2e-92 344.4 379 49.1
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 1.5e-92 344.0 370 48.1
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 2.0e-92 343.6 372 50.5
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 2.6e-92 343.2 371 47.4
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 4.5e-92 342.4 369 50.4
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 5.9e-92 342.0 378 49.5
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 7.7e-92 341.7 383 47.8
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.0e-91 341.3 368 51.6
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 1.3e-91 340.9 372 46.2
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.2e-91 340.1 378 47.9
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 5.0e-91 339.0 372 48.9
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 6.5e-91 338.6 376 47.9
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.1e-90 337.8 367 51.0
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 9.4e-90 334.7 367 50.7
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.1e-89 333.6 383 47.8
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 3.9e-88 329.3 368 47.3
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 3.9e-88 329.3 377 45.6
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 5.2e-88 328.9 368 49.5
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 8.8e-88 328.2 390 48.2
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 5.7e-87 325.5 372 46.5
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 7.4e-87 325.1 376 46.3
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.3e-86 324.3 390 46.7
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.7e-86 323.9 400 45.8
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.8e-86 323.2 308 53.6
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.4e-85 320.9 380 47.9
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 5.3e-85 318.9 397 46.3
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.2e-84 317.8 373 46.1
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 5.9e-84 315.5 363 44.6
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.3e-83 314.3 368 44.6
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 3.2e-82 309.7 376 44.9
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 2.1e-81 307.0 383 42.8
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 2.1e-81 307.0 383 42.8
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 2.7e-81 306.6 386 45.9
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.0e-80 304.7 367 44.1
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.8e-80 303.9 365 47.1
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 4.0e-80 302.8 374 46.0
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 2.0e-79 300.4 390 41.8
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 4.4e-79 299.3 375 43.5
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 8.2e-78 295.0 389 41.1
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 1.1e-77 294.7 368 45.4
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 2.4e-77 293.5 366 42.6
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 9.1e-77 291.6 382 43.7
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 9.1e-77 291.6 250 58.4
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 2.7e-76 290.0 373 44.5
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 1.0e-75 288.1 382 43.5
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 1.7e-75 287.3 272 54.0
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 2.9e-75 286.6 382 43.2
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 5.0e-75 285.8 377 43.8
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 6.5e-75 285.4 389 40.9
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 2.5e-74 283.5 393 43.5
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 4.2e-74 282.7 383 42.8
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 1.6e-73 280.8 376 43.9
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.7e-73 279.3 379 43.3
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 8.0e-73 278.5 385 41.0
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 1.0e-72 278.1 264 50.0
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 1.4e-72 277.7 390 41.8
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 6.8e-72 275.4 376 41.8
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 2.6e-71 273.5 370 40.0
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 7.5e-71 271.9 375 40.0
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 1.3e-70 271.2 372 41.4
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 1.7e-70 270.8 371 40.7
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.2e-70 270.4 267 51.3
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 6.3e-70 268.9 376 42.8
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 2.4e-69 266.9 369 43.1
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 4.1e-69 266.2 380 41.3
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 1.2e-68 264.6 264 48.1
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.9e-67 260.0 237 56.1
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.1e-66 258.1 372 40.1
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 2.5e-66 256.9 373 42.6
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 7.2e-66 255.4 296 43.6
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 7.2e-66 255.4 374 39.8
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 2.8e-65 253.4 372 39.0
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 1.3e-62 244.6 373 40.5
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.7e-59 234.2 329 38.0
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 4.3e-58 229.6 263 45.6
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 1.0e-56 224.9 281 45.6
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 9.8e-55 218.4 202 57.4
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 3.7e-54 216.5 228 48.2
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 1.1e-53 214.9 375 35.2
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 2.0e-47 194.1 180 55.6
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-45 187.2 223 43.5
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.0e-40 169.9 204 49.0
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 4.7e-33 146.4 203 44.3
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 1.2e-31 141.7 388 31.4
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 7.6e-31 139.0 394 34.0
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 3.2e-29 133.7 361 31.6
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 2.3e-27 127.5 162 46.3
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 2.1e-25 120.9 130 48.5
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 6.9e-24 115.9 114 51.8
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 5.8e-23 112.8 283 30.4
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 6.4e-22 109.4 369 27.9
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 8.4e-22 109.0 262 34.7
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 3.5e-20 103.6 348 29.6
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 8.7e-19 99.0 315 30.8
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 8.7e-19 99.0 315 30.8
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.5e-18 98.2 225 35.1
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 2.5e-18 97.4 240 29.6
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 1.3e-17 95.1 379 28.0
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 1.3e-17 95.1 353 27.8
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 1.6e-17 94.7 315 31.1
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 8.1e-17 92.4 347 27.4
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 8.1e-17 92.4 347 27.4
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 2.4e-16 90.9 354 28.8
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 2.4e-16 90.9 362 28.7
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 3.1e-16 90.5 365 29.3
Lalb_Chr03g0041891 Lupinus albus HOM05D007853 ORTHO05D009873 3.1e-16 90.5 352 27.8
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 4.0e-16 90.1 306 28.8
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 1.5e-15 88.2 375 26.7
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.6e-15 87.4 92 48.9
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 5.8e-15 86.3 100 42.0
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.9e-14 84.0 88 43.2
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.9e-14 84.0 372 23.9
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 1.1e-13 82.0 360 28.1
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 1.9e-13 81.3 366 27.3
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 2.7e-12 77.4 399 26.6
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 6.9e-08 62.8 88 42.0
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 3.4e-07 60.5 88 44.3
SEGI_31464 Sequoiadendron giganteum HOM05D004907 ORTHO05D005707 6.4e-06 56.2 58 37.9


User provided reference genes

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