Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0168 Fragaria x ananassa HOM05D003997 ORTHO05D002698 2.9e-82 308.5 156 100.0
FAN12G3167 Fragaria x ananassa HOM05D003997 ORTHO05D002698 2.9e-82 308.5 156 100.0
FvH4_4g00560 Fragaria vesca HOM05D003997 ORTHO05D002698 1.4e-81 306.2 156 99.4
FAN12G2504 Fragaria x ananassa HOM05D003997 ORTHO05D002698 8.4e-74 280.4 142 100.0
FAN17G2484 Fragaria x ananassa HOM05D003997 ORTHO05D002698 5.4e-73 277.7 142 99.3
RcHm_v2.0_Chr4g0386011 Rosa chinensis HOM05D003997 ORTHO05D002698 2.7e-72 275.4 156 89.7
FAN22G0547 Fragaria x ananassa HOM05D003997 ORTHO05D002698 5.1e-71 271.2 142 96.5
MD03G1130200 Malus domestica HOM05D003997 ORTHO05D002698 1.2e-51 206.8 156 69.2
MD06G1011100 Malus domestica HOM05D003997 ORTHO05D002698 2.6e-51 205.7 156 69.2
Prupe.7G027600 Prunus persica HOM05D003997 ORTHO05D002698 2.9e-50 202.2 156 67.9
Cpa.g.sc17.105 Carica papaya HOM05D003997 ORTHO05D002698 4.5e-35 151.8 161 56.5
Potri.016G067100 Populus trichocarpa HOM05D003997 ORTHO05D002698 5.0e-34 148.3 161 54.7
Thecc.05G108200 Theobroma cacao HOM05D003997 ORTHO05D002698 5.0e-34 148.3 161 56.5
Cc06_g06830 Coffea canephora HOM05D003997 ORTHO05D002698 6.5e-34 147.9 151 57.6
Nn2g14387 Nelumbo nucifera HOM05D003997 ORTHO05D002698 8.5e-34 147.5 138 60.1
MD14G1042400 Malus domestica HOM05D003997 ORTHO05D002698 1.1e-33 147.1 138 58.7
RcHm_v2.0_Chr3g0476631 Rosa chinensis HOM05D003997 ORTHO05D002698 1.1e-33 147.1 161 53.4
Hma1.2p1_2082F.1_g313570 Hydrangea macrophylla HOM05D003997 ORTHO05D002698 2.5e-33 146.0 161 54.7
Oeu020171.1 Olea europaea HOM05D003997 ORTHO05D002698 3.2e-33 145.6 138 60.1
RcHm_v2.0_Chr7g0223381 Rosa chinensis HOM05D003997 ORTHO05D002698 3.2e-33 145.6 161 52.8
GSVIVG01022501001 Vitis vinifera HOM05D003997 ORTHO05D002698 3.2e-33 145.6 138 59.4
Actinidia37765 Actinidia chinensis HOM05D003997 ORTHO05D002698 4.2e-33 145.2 161 52.8
MSTRG.10419 Avicennia marina HOM05D003997 ORTHO05D002698 5.5e-33 144.8 138 59.4
Ciclev10013709m.g Citrus clementina HOM05D003997 ORTHO05D002698 5.5e-33 144.8 138 60.9
Prupe.7G091500 Prunus persica HOM05D003997 ORTHO05D002698 5.5e-33 144.8 138 58.0
CANSAT35G1644 Cannabis sativa HOM05D003997 ORTHO05D002698 7.2e-33 144.4 161 54.0
DCAR_013448 Daucus carota HOM05D003997 ORTHO05D002698 7.2e-33 144.4 145 57.9
ATR0730G052 Amborella trichopoda HOM05D003997 ORTHO05D002698 1.2e-32 143.7 138 59.4
Manes.08G035900 Manihot esculenta HOM05D003997 ORTHO05D002698 1.2e-32 143.7 161 55.9
Atru.chr8.1304 Acer truncatum HOM05D003997 ORTHO05D002698 1.6e-32 143.3 161 53.4
Dinv25067 Davidia involucrata HOM05D003997 ORTHO05D002698 1.6e-32 143.3 163 54.6
QL07p027111 Quercus lobata HOM05D003997 ORTHO05D002698 1.6e-32 143.3 162 53.7
THA.LOC109116862 Tarenaya hassleriana HOM05D003997 ORTHO05D002698 1.6e-32 143.3 138 58.0
TAR623G1175 Trochodendron aralioides HOM05D003997 ORTHO05D002698 1.6e-32 143.3 138 58.0
Lj3A736G17 Lonicera japonica HOM05D003997 ORTHO05D002698 3.6e-32 142.1 138 57.2
Sabra16G0068400 Salix brachista HOM05D003997 ORTHO05D002698 3.6e-32 142.1 161 52.2
TWI53G0181 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 3.6e-32 142.1 138 58.0
CSS0008111 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 4.6e-32 141.7 159 53.5
CSS0023244 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 4.6e-32 141.7 159 53.5
CiPaw.15G185300 Carya illinoinensis HOM05D003997 ORTHO05D002698 4.6e-32 141.7 163 54.6
COL.COLO4_29520 Corchorus olitorius HOM05D003997 ORTHO05D002698 6.1e-32 141.4 161 54.0
TWI74G0953 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 6.1e-32 141.4 138 56.5
MBI19_g30302_MAGBIO Magnolia biondii HOM05D003997 ORTHO05D002698 7.9e-32 141.0 138 59.4
Nitab4.5_0000082g0420 Nicotiana tabacum HOM05D003997 ORTHO05D002698 1.0e-31 140.6 138 58.7
Nitab4.5_0009392g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 1.0e-31 140.6 138 58.7
Nitab4.5_0014391g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 1.0e-31 140.6 138 58.7
Nitab4.5_0021549g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 1.0e-31 140.6 138 58.7
FAN02G0475 Fragaria x ananassa HOM05D003997 ORTHO05D002698 1.4e-31 140.2 161 53.4
Gohir.D01G190300 Gossypium hirsutum HOM05D003997 ORTHO05D002698 1.4e-31 140.2 159 54.1
Gorai.002G234000 Gossypium raimondii HOM05D003997 ORTHO05D002698 1.4e-31 140.2 159 54.1
ClCG01G012560 Citrullus lanatus HOM05D003997 ORTHO05D002698 1.8e-31 139.8 138 56.5
Duzib128G1254 Durio zibethinus HOM05D003997 ORTHO05D002698 1.8e-31 139.8 161 53.4
Gohir.A01G200200 Gossypium hirsutum HOM05D003997 ORTHO05D002698 1.8e-31 139.8 163 52.8
SGA_v2.0_scaffold392G50675 Striga asiatica HOM05D003997 ORTHO05D002698 1.8e-31 139.8 138 58.0
Aqoxy1G01867 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 2.3e-31 139.4 138 57.2
Aqoxy4G00923 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 2.3e-31 139.4 138 58.0
Eucgr.H00426 Eucalyptus grandis HOM05D003997 ORTHO05D002698 2.3e-31 139.4 138 56.5
Cfa020087 Carpinus fangiana HOM05D003997 ORTHO05D002698 3.0e-31 139.0 124 62.1
FAN05G3201 Fragaria x ananassa HOM05D003997 ORTHO05D002698 3.0e-31 139.0 161 52.8
SHI07013 Sapria himalayana HOM05D003997 ORTHO05D002698 3.0e-31 139.0 150 56.0
HanXRQChr17g0562561 Helianthus annuus HOM05D003997 ORTHO05D002698 3.9e-31 138.7 138 55.1
Sed0019356 Sechium edule HOM05D003997 ORTHO05D002698 3.9e-31 138.7 138 57.2
CiPaw.08G072600 Carya illinoinensis HOM05D003997 ORTHO05D002698 5.1e-31 138.3 157 54.8
FvH4_6g20730 Fragaria vesca HOM05D003997 ORTHO05D002698 5.1e-31 138.3 138 57.2
FAN14G5955 Fragaria x ananassa HOM05D003997 ORTHO05D002698 5.1e-31 138.3 138 57.2
Peaxi162Scf00002g03712 Petunia axillaris HOM05D003997 ORTHO05D002698 5.1e-31 138.3 145 57.2
Lsat_1_v5_gn_4_40160 Lactuca sativa HOM05D003997 ORTHO05D002698 6.7e-31 137.9 157 51.6
PSO675G1782 Papaver somniferum HOM05D003997 ORTHO05D002698 6.7e-31 137.9 159 52.8
PSO732G0769 Papaver somniferum HOM05D003997 ORTHO05D002698 6.7e-31 137.9 159 52.8
unitig_8.g3554 Utricularia gibba HOM05D003997 ORTHO05D002698 6.7e-31 137.9 138 56.5
Ah.15g098860 Amaranthus hybridus HOM05D003997 ORTHO05D002698 2.0e-30 136.3 149 53.7
Aa31LG11G1160 Aethionema arabicum HOM05D003997 ORTHO05D002698 2.5e-30 136.0 124 58.1
MELO3C004760.2 Cucumis melo HOM05D003997 ORTHO05D002698 2.5e-30 136.0 138 55.1
Migut.O00931 Erythranthe guttata HOM05D003997 ORTHO05D002698 3.3e-30 135.6 143 55.9
QL03p055008 Quercus lobata HOM05D003997 ORTHO05D002698 3.3e-30 135.6 138 56.5
Solyc04g017680.3 Solanum lycopersicum HOM05D003997 ORTHO05D002698 3.3e-30 135.6 138 57.2
Sopen04g008760 Solanum pennellii HOM05D003997 ORTHO05D002698 3.3e-30 135.6 138 57.2
HPP92_017694 Vanilla planifolia HOM05D003997 ORTHO05D002698 3.3e-30 135.6 138 55.1
CsaV3_1G014590 Cucumis sativus L. HOM05D003997 ORTHO05D002698 4.3e-30 135.2 138 54.3
ECA234G3695 Erigeron canadensis HOM05D003997 ORTHO05D002698 4.3e-30 135.2 138 54.3
Migut.L01852 Erythranthe guttata HOM05D003997 ORTHO05D002698 4.3e-30 135.2 143 55.9
VMungo1383G3620 Vigna mungo HOM05D003997 ORTHO05D002698 5.7e-30 134.8 143 54.5
Rhsim03G0061700 Rhododendron simsii HOM05D003997 ORTHO05D002698 9.7e-30 134.0 138 54.3
Sc06g0010610 Simmondsia chinensis HOM05D003997 ORTHO05D002698 9.7e-30 134.0 138 55.1
EL10Ac7g16269 Beta vulgaris HOM05D003997 ORTHO05D002698 1.3e-29 133.7 149 52.3
TPR.G30221 Trifolium pratense HOM05D003997 ORTHO05D002698 1.3e-29 133.7 158 52.5
vmacro07504 Vaccinium macrocarpon HOM05D003997 ORTHO05D002698 1.3e-29 133.7 138 56.5
Phvul.008G070600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 1.7e-29 133.3 138 55.1
RhsimUnG0113000 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.7e-29 133.3 138 55.1
BcaB07g29840 Brassica carinata HOM05D003997 ORTHO05D002698 2.8e-29 132.5 124 55.6
AUR62017549 Chenopodium quinoa HOM05D003997 ORTHO05D002698 2.8e-29 132.5 150 51.3
AUR62015091 Chenopodium quinoa HOM05D003997 ORTHO05D002698 3.7e-29 132.1 149 51.7
Psat6g101760 Pisum sativum HOM05D003997 ORTHO05D002698 3.7e-29 132.1 149 52.3
A02p42340 Brassica napus HOM05D003997 ORTHO05D002698 6.3e-29 131.3 124 55.6
C02p62220 Brassica napus HOM05D003997 ORTHO05D002698 6.3e-29 131.3 124 55.6
BraA02t09164Z Brassica rapa HOM05D003997 ORTHO05D002698 6.3e-29 131.3 124 55.6
Os01g0616500 Oryza sativa ssp. japonica HOM05D003997 ORTHO05D002698 6.3e-29 131.3 138 53.6
Hund20962 Selenicereus undatus HOM05D003997 ORTHO05D002698 6.3e-29 131.3 149 53.0
Ca_12342_v3 Cicer arietinum L. HOM05D003997 ORTHO05D002698 8.2e-29 131.0 141 52.5
BolC2t12279H Brassica oleracea HOM05D003997 ORTHO05D002698 1.1e-28 130.6 124 54.8
Glyma.18G227500 Glycine max HOM05D003997 ORTHO05D002698 1.1e-28 130.6 141 53.9
AL1G60620 Arabidopsis lyrata HOM05D003997 ORTHO05D002698 1.4e-28 130.2 138 54.3
Lalb_Chr05g0221411 Lupinus albus HOM05D003997 ORTHO05D002698 1.4e-28 130.2 141 53.2
Phvul.008G070900 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 1.4e-28 130.2 138 54.3
Zm00001eb095190 Zea mays HOM05D003997 ORTHO05D002698 1.4e-28 130.2 138 52.9
BcaC03g18154 Brassica carinata HOM05D003997 ORTHO05D002698 1.8e-28 129.8 124 54.8
BcaC03g18159 Brassica carinata HOM05D003997 ORTHO05D002698 1.8e-28 129.8 124 54.8
Sp2g25660 Schrenkiella parvula HOM05D003997 ORTHO05D002698 1.8e-28 129.8 124 55.6
AT4G28360 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 2.4e-28 129.4 138 54.3
Gohir.A09G132800 Gossypium hirsutum HOM05D003997 ORTHO05D002698 3.1e-28 129.0 138 56.5
Carub.0001s4137 Capsella rubella HOM05D003997 ORTHO05D002698 4.1e-28 128.6 138 53.6
Carub.0007s1240 Capsella rubella HOM05D003997 ORTHO05D002698 4.1e-28 128.6 138 53.6
SalBow5G1795 Salvia bowleyana HOM05D003997 ORTHO05D002698 4.1e-28 128.6 151 51.7
BcaB02g09651 Brassica carinata HOM05D003997 ORTHO05D002698 5.3e-28 128.3 124 54.0
BcaC01g02477 Brassica carinata HOM05D003997 ORTHO05D002698 5.3e-28 128.3 124 54.0
C03p64380 Brassica napus HOM05D003997 ORTHO05D002698 5.3e-28 128.3 124 54.0
BraA06t25868Z Brassica rapa HOM05D003997 ORTHO05D002698 5.3e-28 128.3 124 54.0
Lj2g0021502 Lotus japonicus HOM05D003997 ORTHO05D002698 5.3e-28 128.3 143 53.8
Medtr1g040020 Medicago truncatula HOM05D003997 ORTHO05D002698 6.9e-28 127.9 154 51.9
BolC3t18692H Brassica oleracea HOM05D003997 ORTHO05D002698 1.2e-27 127.1 124 53.2
Glyma.09G264400 Glycine max HOM05D003997 ORTHO05D002698 1.2e-27 127.1 160 51.2
Lalb_Chr16g0386841 Lupinus albus HOM05D003997 ORTHO05D002698 2.0e-27 126.3 149 49.7
AT1G52370 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 2.6e-27 125.9 138 52.9
Thhalv10003962m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 2.6e-27 125.9 124 54.8
CARHR236070 Cardamine hirsuta HOM05D003997 ORTHO05D002698 2.2e-26 122.9 122 54.1
Gorai.006G147800 Gossypium raimondii HOM05D003997 ORTHO05D002698 3.8e-26 122.1 111 61.3
SEGI_26891 Sequoiadendron giganteum HOM05D003997 ORTHO05D002698 6.5e-26 121.3 122 55.7
arahy.Tifrunner.gnm1.ann1.2ECS7R Arachis hypogaea HOM05D003997 ORTHO05D002698 2.5e-25 119.4 155 47.1
arahy.Tifrunner.gnm1.ann1.4C6UH4 Arachis hypogaea HOM05D003997 ORTHO05D002698 2.5e-25 119.4 155 47.1
arahy.Tifrunner.gnm1.ann1.7B1PRD Arachis hypogaea HOM05D003997 ORTHO05D002698 2.5e-25 119.4 155 47.1
arahy.Tifrunner.gnm1.ann1.RN4U32 Arachis hypogaea HOM05D003997 ORTHO05D002698 2.5e-25 119.4 155 47.1
arahy.Tifrunner.gnm1.ann1.RXW997 Arachis hypogaea HOM05D003997 ORTHO05D002698 2.5e-25 119.4 155 47.1
arahy.Tifrunner.gnm1.ann1.W16VAI Arachis hypogaea HOM05D003997 ORTHO05D002698 2.5e-25 119.4 155 47.1
arahy.Tifrunner.gnm1.ann1.ZAYD4R Arachis hypogaea HOM05D003997 ORTHO05D002698 2.5e-25 119.4 155 47.1
Rhsim03G0061200 Rhododendron simsii HOM05D003997 ORTHO05D002698 4.2e-25 118.6 108 59.3
arahy.Tifrunner.gnm1.ann1.4LVT1K Arachis hypogaea HOM05D003997 ORTHO05D002698 7.2e-25 117.9 141 48.9
Nitab4.5_0007356g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 7.9e-24 114.4 109 59.6
CDE02G4432 Ceratophyllum demersum HOM05D003997 ORTHO05D002698 1.8e-23 113.2 125 54.4
PGSC0003DMG400034098 Solanum tuberosum HOM05D003997 ORTHO05D002698 2.8e-21 105.9 151 47.0
CAN.G1237.44 Capsicum annuum HOM05D003997 ORTHO05D002698 1.1e-20 104.0 188 41.5
Phvul.008G071600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 2.4e-20 102.8 105 54.3
MD12G1043300 Malus domestica HOM05D003997 ORTHO05D002698 4.1e-20 102.1 101 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3244 Anthoceros agrestis HOM05D003997 ORTHO05D002698 1.2e-19 100.5 126 45.2
Pp3c8_16210 Physcomitrium patens HOM05D003997 ORTHO05D002698 2.6e-19 99.4 124 46.8
CARHR060900 Cardamine hirsuta HOM05D003997 ORTHO05D002698 2.2e-18 96.3 121 47.1
Haze_20104 Corylus avellana HOM05D003997 ORTHO05D002698 1.1e-17 94.0 98 54.1
PGR142G0313 Punica granatum HOM05D003997 ORTHO05D002698 1.4e-17 93.6 140 45.7
SMO228G0153 Selaginella moellendorffii HOM05D003997 ORTHO05D002698 1.4e-17 93.6 145 40.0
RhsimUnG0113200 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.6e-16 89.0 103 50.5
RhsimUnG0112900 Rhododendron simsii HOM05D003997 ORTHO05D002698 4.7e-16 88.6 101 51.5
Mapoly0001s0445 Marchantia polymorpha HOM05D003997 ORTHO05D002698 1.8e-15 86.7 138 38.4
Rhsim03G0061600 Rhododendron simsii HOM05D003997 ORTHO05D002698 1.8e-15 86.7 100 51.0
MD12G1043400 Malus domestica HOM05D003997 ORTHO05D002698 2.0e-14 83.2 58 70.7
Rhsim03G0060600 Rhododendron simsii HOM05D003997 ORTHO05D002698 5.7e-14 81.6 113 51.3
Solyc03g044440.2 Solanum lycopersicum HOM05D003997 ORTHO05D002698 1.1e-12 77.4 151 39.1
Phvul.010G107200 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 1.2e-11 73.9 58 62.1
Rhsim03G0060300 Rhododendron simsii HOM05D003997 ORTHO05D002698 5.0e-10 68.6 138 37.7
BolSC101t60211H Brassica oleracea HOM05D003997 ORTHO05D002698 7.2e-09 64.7 52 57.7
Psat6g152720 Pisum sativum HOM05D003997 ORTHO05D002698 4.7e-08 62.0 93 45.2
MCO07G289 Micromonas commoda HOM05D003997 ORTHO05D002698 6.1e-08 61.6 99 37.4
PRCOL_00001286 Prasinoderma coloniale HOM05D003997 ORTHO05D002698 6.1e-08 61.6 104 34.6
CBR_g23715 Chara braunii HOM05D003997 ORTHO05D002698 8.0e-08 61.2 112 36.6
Cre05.g242950 Chlamydomonas reinhardtii HOM05D003997 ORTHO05D002698 1.5e-06 57.0 99 36.4
Sopen03g008580 Solanum pennellii HOM05D003997 ORTHO05D002698 2.0e-06 56.6 71 49.3


User provided reference genes

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