Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.6e-46 188.3 93 100.0
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.9e-42 174.5 93 94.6
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.5e-25 118.6 63 93.7
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.5e-25 118.6 63 93.7
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 5.6e-25 117.5 58 100.0
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 1.6e-24 115.9 58 98.3
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 2.8e-24 115.2 58 96.6
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 8.1e-24 113.6 58 94.8
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 1.4e-23 112.8 58 94.8
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 8.9e-23 110.2 58 89.7
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 8.9e-23 110.2 58 89.7
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 8.9e-23 110.2 58 91.4
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 8.9e-23 110.2 58 89.7
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 8.9e-23 110.2 58 89.7
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 3.4e-22 108.2 58 89.7
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 3.4e-22 108.2 58 87.9
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 2.9e-21 105.1 58 84.5
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 3.7e-21 104.8 58 84.5
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 3.7e-21 104.8 58 84.5
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 3.7e-21 104.8 58 84.5
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 1.1e-20 103.2 58 82.8
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.1e-20 103.2 58 82.8
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.1e-20 103.2 58 82.8
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.4e-20 102.8 58 82.8
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.9e-20 102.4 56 83.9
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 2.4e-20 102.1 58 81.0
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 3.2e-20 101.7 75 74.7
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 4.1e-20 101.3 64 79.7
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 7.1e-20 100.5 58 81.0
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 7.1e-20 100.5 58 81.0
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 9.2e-20 100.1 59 86.4
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 9.2e-20 100.1 59 83.1
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 1.2e-19 99.8 59 84.7
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 1.2e-19 99.8 59 84.7
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 1.2e-19 99.8 57 80.7
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.6e-19 99.4 53 88.7
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 1.6e-19 99.4 78 69.2
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 2.1e-19 99.0 57 78.9
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 2.1e-19 99.0 71 71.8
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 2.7e-19 98.6 59 83.1
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 3.5e-19 98.2 59 84.7
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 3.5e-19 98.2 59 83.1
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 4.6e-19 97.8 59 84.7
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 4.6e-19 97.8 59 83.1
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 4.6e-19 97.8 59 83.1
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 83.1
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 83.1
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 83.1
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 83.1
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 83.1
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 83.1
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 83.1
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 81.4
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 7.8e-19 97.1 59 83.1
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.7e-18 95.9 59 79.7
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.7e-18 95.9 59 79.7
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.7e-18 95.9 59 79.7
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.7e-18 95.9 59 79.7
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 1.7e-18 95.9 59 79.7
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 1.7e-18 95.9 59 79.7
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.7e-18 95.9 69 72.5
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 3.0e-18 95.1 56 85.7
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.1e-17 93.2 60 80.0
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.1e-17 93.2 60 80.0
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 1.1e-17 93.2 60 81.7
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.5e-17 92.8 56 82.1
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.5e-17 92.8 56 82.1
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 2.5e-17 92.0 61 80.3
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 2.5e-17 92.0 60 80.0
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 3.3e-17 91.7 63 73.0
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 3.3e-17 91.7 58 79.3
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 7.3e-17 90.5 56 82.1
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 9.6e-17 90.1 60 78.3
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 1.2e-16 89.7 56 80.4
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 1.2e-16 89.7 58 75.9
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 2.1e-16 89.0 67 67.2
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 2.1e-16 89.0 61 75.4
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.8e-16 88.6 61 73.8
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.8e-16 88.6 61 73.8
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.8e-16 88.6 61 73.8
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 2.8e-16 88.6 61 73.8
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 2.8e-16 88.6 61 73.8
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 4.7e-16 87.8 63 71.4
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 4.7e-16 87.8 61 73.8
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 4.7e-16 87.8 61 73.8
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 4.7e-16 87.8 56 76.8
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 4.7e-16 87.8 58 75.9
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 6.2e-16 87.4 61 73.8
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 8.1e-16 87.0 64 70.3
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 1.8e-15 85.9 61 72.1
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 1.8e-15 85.9 63 69.8
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 3.1e-15 85.1 61 72.1
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-15 84.7 58 74.1
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 4.0e-15 84.7 61 70.5
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 4.0e-15 84.7 61 70.5
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 4.0e-15 84.7 61 70.5
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 4.0e-15 84.7 61 70.5
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 6.8e-15 84.0 54 77.8
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 2.0e-14 82.4 50 80.0
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 7.6e-14 80.5 52 75.0
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 2.9e-13 78.6 59 67.8
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 6.4e-13 77.4 55 70.9
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 6.4e-13 77.4 56 67.9
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 1.1e-12 76.6 51 74.5
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 3.2e-12 75.1 48 72.9
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 1.7e-10 69.3 55 60.0
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 1.7e-10 69.3 59 62.7
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 2.3e-10 68.9 53 58.5
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 3.9e-10 68.2 59 59.3
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.1e-09 66.6 47 70.2
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.5e-09 66.2 44 72.7
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.5e-09 66.2 44 72.7
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 2.5e-09 65.5 44 68.2
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 3.3e-09 65.1 57 63.2
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 5.6e-09 64.3 50 60.0
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 5.6e-09 64.3 54 63.0
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 9.6e-09 63.5 55 61.8
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 1.3e-08 63.2 49 63.3
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 1.6e-08 62.8 51 58.8
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 2.8e-08 62.0 54 59.3
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 4.8e-08 61.2 50 58.0
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 6.2e-08 60.8 48 58.3
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 6.2e-08 60.8 44 61.4
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 3.1e-07 58.5 55 54.5
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 3.1e-07 58.5 52 57.7
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 5.3e-07 57.8 52 57.7
Medtr1g011670 Medicago truncatula HOM05D005020 ORTHO05D006017 6.9e-07 57.4 37 67.6
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 1.2e-06 56.6 44 59.1


User provided reference genes

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