Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G1929 Fragaria x ananassa HOM05D003747 ORTHO05D029724 1.4e-41 172.6 87 100.0
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 2.3e-28 128.6 66 98.5
FAN12G1591 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.3e-28 128.6 66 98.5
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.3e-28 128.6 66 98.5
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.3e-28 128.6 66 98.5
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.3e-28 128.6 66 98.5
FAN20G0559 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.5e-27 125.9 66 97.0
FAN05G3899 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.9e-27 125.6 66 97.0
FAN14G4182 Fragaria x ananassa HOM05D003747 ORTHO05D005080 1.2e-26 122.9 66 95.5
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 1.3e-23 112.8 68 88.2
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 1.7e-23 112.5 66 89.4
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 1.7e-23 112.5 66 89.4
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 3.7e-23 111.3 66 86.4
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 6.4e-23 110.5 66 87.9
FAN03G1393 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.4e-22 108.6 56 96.4
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 4.1e-22 107.8 66 86.4
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 5.4e-22 107.5 64 87.5
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 7.1e-22 107.1 66 84.8
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 7.1e-22 107.1 76 72.4
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 1.2e-21 106.3 66 83.3
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.2e-21 106.3 64 87.5
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 1.6e-21 105.9 68 79.4
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 1.6e-21 105.9 66 81.8
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 1.6e-21 105.9 63 87.3
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 2.1e-21 105.5 66 83.3
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 2.1e-21 105.5 66 81.8
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 2.1e-21 105.5 66 81.8
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 2.1e-21 105.5 68 80.9
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 2.7e-21 105.1 66 83.3
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 2.7e-21 105.1 63 87.3
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 3.5e-21 104.8 68 77.9
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 4.6e-21 104.4 76 71.1
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 4.6e-21 104.4 65 87.7
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 4.6e-21 104.4 65 86.2
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 4.6e-21 104.4 64 82.8
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 4.6e-21 104.4 68 77.9
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 6.0e-21 104.0 64 82.8
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 6.0e-21 104.0 64 82.8
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 6.0e-21 104.0 76 71.1
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 7.8e-21 103.6 64 84.4
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 7.8e-21 103.6 64 84.4
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 1.0e-20 103.2 65 84.6
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 1.0e-20 103.2 65 84.6
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 1.0e-20 103.2 66 84.8
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 1.0e-20 103.2 64 81.2
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 1.3e-20 102.8 75 70.7
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.3e-20 102.8 59 86.4
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 1.3e-20 102.8 73 72.6
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.3e-20 102.8 72 73.6
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.3e-20 102.8 72 73.6
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.7e-20 102.4 75 69.3
CsaV3_1G045460 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.3e-20 102.1 66 78.8
CsaV3_UNG233280 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.3e-20 102.1 66 78.8
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 2.3e-20 102.1 68 76.5
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 3.0e-20 101.7 61 82.0
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 3.0e-20 101.7 61 82.0
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 3.0e-20 101.7 65 84.6
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 3.9e-20 101.3 73 71.2
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.9e-20 101.3 59 84.7
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 3.9e-20 101.3 75 68.0
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 5.1e-20 100.9 71 71.8
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 5.1e-20 100.9 59 84.7
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 5.1e-20 100.9 75 70.7
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 6.6e-20 100.5 71 70.4
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 6.6e-20 100.5 71 70.4
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 8.6e-20 100.1 69 72.5
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 8.6e-20 100.1 68 75.0
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 1.1e-19 99.8 73 69.9
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 1.1e-19 99.8 76 69.7
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 1.1e-19 99.8 62 80.6
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 1.1e-19 99.8 67 74.6
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 1.5e-19 99.4 64 79.7
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.5e-19 99.4 76 68.4
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 1.9e-19 99.0 64 76.6
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 1.9e-19 99.0 64 78.1
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 1.9e-19 99.0 64 79.7
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 1.9e-19 99.0 64 79.7
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 1.9e-19 99.0 93 58.1
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 2.5e-19 98.6 61 83.6
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 3.3e-19 98.2 59 83.1
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 3.3e-19 98.2 67 82.1
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 3.3e-19 98.2 72 68.1
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 5.6e-19 97.4 62 79.0
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 5.6e-19 97.4 62 79.0
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 5.6e-19 97.4 58 81.0
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 5.6e-19 97.4 58 81.0
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 5.6e-19 97.4 58 81.0
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 5.6e-19 97.4 62 79.0
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 5.6e-19 97.4 62 82.3
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 7.3e-19 97.1 69 68.1
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 9.5e-19 96.7 66 72.7
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 9.5e-19 96.7 64 76.6
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 1.2e-18 96.3 64 75.0
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 1.2e-18 96.3 62 77.4
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 1.2e-18 96.3 64 73.4
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 1.2e-18 96.3 71 67.6
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 1.6e-18 95.9 68 70.6
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 1.6e-18 95.9 66 71.2
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 6.2e-18 94.0 79 68.4
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 6.2e-18 94.0 66 74.2
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 6.2e-18 94.0 63 77.8
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.4e-17 92.8 68 70.6
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.4e-17 92.8 68 70.6
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 1.8e-17 92.4 66 68.2
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 1.8e-17 92.4 73 64.4
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 1.8e-17 92.4 72 63.9
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 1.8e-17 92.4 72 63.9
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 2.4e-17 92.0 56 76.8
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 3.1e-17 91.7 58 79.3
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 3.1e-17 91.7 58 79.3
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 3.1e-17 91.7 59 76.3
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 5.2e-17 90.9 72 62.5
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 5.2e-17 90.9 68 67.6
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 8.9e-17 90.1 83 59.0
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 8.9e-17 90.1 72 62.5
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 1.2e-16 89.7 67 70.1
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 1.2e-16 89.7 67 70.1
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 2.6e-16 88.6 63 65.1
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 2.6e-16 88.6 61 70.5
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 2.6e-16 88.6 65 63.1
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 7.6e-16 87.0 70 62.9
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 9.9e-16 86.7 67 64.2
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 1.3e-15 86.3 61 65.6
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 2.9e-15 85.1 57 73.7
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 4.9e-15 84.3 72 61.1
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 1.1e-14 83.2 71 57.7
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 2.4e-14 82.0 78 57.7
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 4.2e-14 81.3 84 53.6
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 1.0e-12 76.6 56 64.3
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 3.0e-12 75.1 76 56.6
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 5.1e-12 74.3 58 62.1
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 8.7e-12 73.6 56 66.1
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 5.6e-11 70.9 65 56.9
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 8.1e-10 67.0 65 55.4
HanXRQChr13g0424291 Helianthus annuus HOM05D003747 ORTHO05D005080 2.4e-09 65.5 52 57.7
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 3.1e-09 65.1 56 57.1
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 6.9e-09 63.9 63 61.9
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 1.2e-08 63.2 69 43.5
FAN12G2681 Fragaria x ananassa HOM05D003747 ORTHO05D029724 4.4e-08 61.2 30 100.0
Zm00001eb159680 Zea mays HOM05D003747 ORTHO05D029724 4.4e-08 61.2 59 52.5
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 5.8e-08 60.8 50 58.0
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 1.7e-07 59.3 52 51.9
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 2.2e-07 58.9 56 55.4
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 2.2e-07 58.9 84 41.7
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 2.9e-07 58.5 70 41.4
Zm00001eb026790 Zea mays HOM05D003747 ORTHO05D029724 2.9e-07 58.5 59 50.8
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.9e-06 55.8 55 50.9
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.4e-06 55.5 35 74.3
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.4e-06 55.5 35 74.3
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 4.2e-06 54.7 69 40.6
HPP92_027213 Vanilla planifolia HOM05D003747 ORTHO05D005080 5.4e-06 54.3 68 42.6


User provided reference genes

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