Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0969 Fragaria x ananassa HOM05D009820 ORTHO05D011171 2.6e-101 372.1 193 100.0
FAN12G3761 Fragaria x ananassa HOM05D009820 ORTHO05D011171 2.6e-101 372.1 193 100.0
FvH4_4g22220 Fragaria vesca HOM05D009820 ORTHO05D011171 1.4e-99 366.3 193 99.0
FAN07G1429 Fragaria x ananassa HOM05D009820 ORTHO05D011171 2.9e-92 342.0 193 92.7
FAN17G1765 Fragaria x ananassa HOM05D009820 ORTHO05D011171 1.9e-83 312.8 193 88.1
RcHm_v2.0_Chr4g0428451 Rosa chinensis HOM05D009820 ORTHO05D011171 3.4e-77 292.0 193 78.2
Prupe.1G211900 Prunus persica HOM05D009820 ORTHO05D011171 1.6e-45 186.8 199 54.8
Atru.chr12.1461 Acer truncatum HOM05D009820 ORTHO05D011171 1.2e-32 144.1 191 47.6
Atru.chr12.1466 Acer truncatum HOM05D009820 ORTHO05D011171 2.0e-32 143.3 191 47.1
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 4.4e-32 142.1 175 51.4
TAR374G1519 Trochodendron aralioides HOM05D009820 ORTHO05D011171 2.2e-31 139.8 197 44.7
Potri.001G070200 Populus trichocarpa HOM05D009820 ORTHO05D011171 2.3e-28 129.8 190 46.8
Nn3g16210 Nelumbo nucifera HOM05D000742 ORTHO05D011171 3.9e-28 129.0 194 44.3
Sabra01G0049200 Salix brachista HOM05D009820 ORTHO05D011171 2.5e-27 126.3 190 46.8
Manes.08G099600 Manihot esculenta HOM05D009820 ORTHO05D011171 1.4e-25 120.6 195 42.6
Gohir.A03G153600 Gossypium hirsutum HOM05D009820 ORTHO05D011171 3.4e-24 115.9 213 39.9
Dinv14392 Davidia involucrata HOM05D009820 ORTHO05D011171 9.8e-24 114.4 188 41.0
Gorai.005G198200 Gossypium raimondii HOM05D009820 ORTHO05D011171 2.9e-23 112.8 213 39.0
Gohir.D02G176500 Gossypium hirsutum HOM05D009820 ORTHO05D011171 3.2e-22 109.4 207 40.6
Aqoxy5G02999 Aquilegia oxysepala HOM05D000742 ORTHO05D011171 1.6e-21 107.1 200 42.5
Thecc.02G188800 Theobroma cacao HOM05D009820 ORTHO05D011171 1.7e-20 103.6 204 38.2
MD16G1144300 Malus domestica HOM05D009820 ORTHO05D011171 2.8e-18 96.3 141 46.8
Aqoxy271s004 Aquilegia oxysepala HOM05D000742 ORTHO05D011171 3.4e-16 89.4 84 56.0
CDE02G3752 Ceratophyllum demersum HOM05D000742 ORTHO05D011171 3.4e-16 89.4 205 32.7
Nn3g16209 Nelumbo nucifera HOM05D000742 ORTHO05D011171 5.8e-16 88.6 77 55.8
CDE06G0636 Ceratophyllum demersum HOM05D009820 ORTHO05D011171 3.7e-15 85.9 192 32.8
HPP92_023044 Vanilla planifolia HOM05D043096 ORTHO05D011171 4.9e-15 85.5 199 33.2
Eucgr.J01652 Eucalyptus grandis HOM05D009820 ORTHO05D011171 1.4e-14 84.0 77 51.9
PSO832G1700 Papaver somniferum HOM05D009820 ORTHO05D011171 7.1e-14 81.6 103 46.6
PGR119G0868 Punica granatum HOM05D009820 ORTHO05D011171 7.1e-14 81.6 167 35.9
PSO591G0105 Papaver somniferum HOM05D009820 ORTHO05D011171 2.1e-13 80.1 103 42.7
CANSAT25G0662 Cannabis sativa HOM05D009820 ORTHO05D011171 1.1e-11 74.3 66 65.2
SEGI_34196 Sequoiadendron giganteum HOM05D000742 ORTHO05D003741 2.5e-11 73.2 237 28.3
MBI07_g42008_MAGBIO Magnolia biondii HOM05D000742 ORTHO05D011171 1.1e-09 67.8 235 28.5
vmacro05717 Vaccinium macrocarpon HOM05D000742 ORTHO05D003741 1.1e-09 67.8 69 46.4
Cpa.g.sc14.16 Carica papaya HOM05D000742 ORTHO05D003741 2.3e-09 66.6 69 40.6
Gohir.A09G019200 Gossypium hirsutum HOM05D000742 ORTHO05D003741 3.1e-09 66.2 151 31.1
Rhsim10G0041000 Rhododendron simsii HOM05D000742 ORTHO05D003741 3.1e-09 66.2 69 43.5
Migut.L01317 Erythranthe guttata HOM05D000742 ORTHO05D003741 4.0e-09 65.9 240 26.2
HPP92_016459 Vanilla planifolia HOM05D000742 ORTHO05D003741 5.2e-09 65.5 240 24.2
Gorai.006G021900 Gossypium raimondii HOM05D000742 ORTHO05D003741 6.8e-09 65.1 151 30.5
SalBow2G0828 Salvia bowleyana HOM05D000742 ORTHO05D003741 6.8e-09 65.1 242 27.3
HPP92_027150 Vanilla planifolia HOM05D000742 ORTHO05D003741 6.8e-09 65.1 231 23.8
Aqoxy6G02089 Aquilegia oxysepala HOM05D000742 ORTHO05D003741 8.9e-09 64.7 207 25.1
Os04g0641400 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D003741 8.9e-09 64.7 69 43.5
SEGI_14673 Sequoiadendron giganteum HOM05D000742 ORTHO05D003741 8.9e-09 64.7 70 45.7
THA.LOC104821169 Tarenaya hassleriana HOM05D000742 ORTHO05D003741 8.9e-09 64.7 67 44.8
CSS0021678 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D003741 1.2e-08 64.3 77 41.6
TWI60G1363 Tripterygium wilfordii HOM05D000742 ORTHO05D003741 1.2e-08 64.3 69 44.9
Zm00001eb431910 Zea mays HOM05D000742 ORTHO05D003741 1.2e-08 64.3 69 46.4
CSS0009959 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D003741 1.5e-08 63.9 69 43.5
unitig_8.g3468 Utricularia gibba HOM05D000742 ORTHO05D003741 1.5e-08 63.9 75 40.0
Gohir.D09G018600 Gossypium hirsutum HOM05D000742 ORTHO05D003741 2.0e-08 63.5 151 30.5
SGA_v2.0_scaffold302G47837 Striga asiatica HOM05D000742 ORTHO05D003741 2.0e-08 63.5 75 37.3
Oeu000619.1 Olea europaea HOM05D000742 ORTHO05D003741 2.6e-08 63.2 240 24.6
Hund13224 Selenicereus undatus HOM05D000742 ORTHO05D003741 2.6e-08 63.2 71 40.8
VMungo1383G2053 Vigna mungo HOM05D000742 ORTHO05D003741 2.6e-08 63.2 67 43.3
ATR0564G409 Amborella trichopoda HOM05D000742 ORTHO05D003741 3.4e-08 62.8 75 40.0
PSO832G1730 Papaver somniferum HOM05D000742 ORTHO05D003741 3.4e-08 62.8 75 40.0
CSS0017870 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D003741 4.4e-08 62.4 69 43.5
Ciclev10032573m.g Citrus clementina HOM05D000742 ORTHO05D003741 4.4e-08 62.4 240 24.2
Manes.15G177100 Manihot esculenta HOM05D000742 ORTHO05D003741 4.4e-08 62.4 69 43.5
Cc11_g13280 Coffea canephora HOM05D000742 ORTHO05D003741 5.8e-08 62.0 75 38.7
COL.COLO4_05128 Corchorus olitorius HOM05D000742 ORTHO05D003741 5.8e-08 62.0 158 29.7
Lalb_Chr10g0093321 Lupinus albus HOM05D000742 ORTHO05D003741 5.8e-08 62.0 122 33.6
Sc11g0007020 Simmondsia chinensis HOM05D000742 ORTHO05D003741 5.8e-08 62.0 70 40.0
Aqoxy3G00703 Aquilegia oxysepala HOM05D000742 ORTHO05D003741 7.6e-08 61.6 69 43.5
CSS0000597 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D003741 7.6e-08 61.6 69 42.0
AUR62034388 Chenopodium quinoa HOM05D000742 ORTHO05D003741 7.6e-08 61.6 69 40.6
MBI02_g33380_MAGBIO Magnolia biondii HOM05D000742 ORTHO05D003741 7.6e-08 61.6 161 28.0
Phvul.008G041900 Phaseolus vulgaris HOM05D000742 ORTHO05D003741 7.6e-08 61.6 67 43.3
Solyc05g007200.4 Solanum lycopersicum HOM05D000742 ORTHO05D003741 9.9e-08 61.2 69 40.6
Sopen05g003160 Solanum pennellii HOM05D000742 ORTHO05D003741 9.9e-08 61.2 69 40.6
unitig_27.g25163 Utricularia gibba HOM05D000742 ORTHO05D000924 9.9e-08 61.2 109 32.1
AUR62039828 Chenopodium quinoa HOM05D000742 ORTHO05D003741 1.3e-07 60.8 69 40.6
ECA246G4740 Erigeron canadensis HOM05D000742 ORTHO05D003741 1.3e-07 60.8 68 42.6
TAR622G1301 Trochodendron aralioides HOM05D000742 ORTHO05D003741 1.3e-07 60.8 69 43.5
QL02p081468 Quercus lobata HOM05D000742 ORTHO05D003741 1.7e-07 60.5 69 42.0
THA.LOC104825573 Tarenaya hassleriana HOM05D000742 ORTHO05D000924 1.7e-07 60.5 170 28.8
Atru.chr8.129 Acer truncatum HOM05D000742 ORTHO05D003741 2.2e-07 60.1 119 31.1
Ca_02742_v3 Cicer arietinum L. HOM05D000742 ORTHO05D003741 2.2e-07 60.1 61 44.3
MSTRG.13410 Avicennia marina HOM05D000742 ORTHO05D003741 2.9e-07 59.7 76 40.8
Cfa007532 Carpinus fangiana HOM05D000742 ORTHO05D003741 2.9e-07 59.7 69 40.6
Haze_14556 Corylus avellana HOM05D000742 ORTHO05D003741 2.9e-07 59.7 69 40.6
Eucgr.J01216 Eucalyptus grandis HOM05D000742 ORTHO05D003741 2.9e-07 59.7 69 40.6
FAN14G4383 Fragaria x ananassa HOM05D000742 ORTHO05D003741 2.9e-07 59.7 69 40.6
Lj6C792T0 Lonicera japonica HOM05D000742 ORTHO05D003741 2.9e-07 59.7 234 23.9
Lj7A397T30 Lonicera japonica HOM05D000742 ORTHO05D003741 2.9e-07 59.7 69 39.1
MD09G1049200 Malus domestica HOM05D000742 ORTHO05D003741 2.9e-07 59.7 69 40.6
Psat3g196400 Pisum sativum HOM05D000742 ORTHO05D003741 2.9e-07 59.7 69 40.6
CANSAT64G2751 Cannabis sativa HOM05D000742 ORTHO05D003741 3.7e-07 59.3 60 46.7
CANSAT64G2868 Cannabis sativa HOM05D000742 ORTHO05D003741 3.7e-07 59.3 60 46.7
Cc11_g06570 Coffea canephora HOM05D000742 ORTHO05D000924 3.7e-07 59.3 201 26.9
Glyma.09G239200 Glycine max HOM05D000742 ORTHO05D003741 3.7e-07 59.3 181 27.1
Pp3c19_9760 Physcomitrium patens HOM05D000742 ORTHO05D000924 3.7e-07 59.3 79 40.5
Potri.017G081500 Populus trichocarpa HOM05D000742 ORTHO05D003741 3.7e-07 59.3 96 33.3
RcHm_v2.0_Chr4g0440121 Rosa chinensis HOM05D000742 ORTHO05D003741 3.7e-07 59.3 68 42.6
PGSC0003DMG400025609 Solanum tuberosum HOM05D000742 ORTHO05D003741 3.7e-07 59.3 69 39.1
Duzib264G0090 Durio zibethinus HOM05D000742 ORTHO05D003741 4.9e-07 58.9 149 28.2
MD13G1017900 Malus domestica HOM05D000742 ORTHO05D000924 4.9e-07 58.9 225 28.0
Peaxi162Scf00777g00048 Petunia axillaris HOM05D000742 ORTHO05D003741 4.9e-07 58.9 83 36.1
SalBow8G1497 Salvia bowleyana HOM05D000742 ORTHO05D003741 4.9e-07 58.9 240 24.6
Thecc.04G078900 Theobroma cacao HOM05D000742 ORTHO05D003741 4.9e-07 58.9 69 36.2
AL1G26220 Arabidopsis lyrata HOM05D000742 ORTHO05D003741 6.4e-07 58.5 232 26.3
FvH4_4g31610 Fragaria vesca HOM05D000742 ORTHO05D003741 6.4e-07 58.5 68 41.2
FAN07G1008 Fragaria x ananassa HOM05D000742 ORTHO05D003741 6.4e-07 58.5 68 41.2
FAN12G2841 Fragaria x ananassa HOM05D000742 ORTHO05D003741 6.4e-07 58.5 68 41.2
FAN17G1148 Fragaria x ananassa HOM05D000742 ORTHO05D003741 6.4e-07 58.5 68 41.2
FAN22G1453 Fragaria x ananassa HOM05D000742 ORTHO05D003741 6.4e-07 58.5 68 41.2
RcHm_v2.0_Chr2g0168821 Rosa chinensis HOM05D000742 ORTHO05D003741 6.4e-07 58.5 69 40.6
Sed0004959 Sechium edule HOM05D000742 ORTHO05D003741 6.4e-07 58.5 236 24.2
CDE04G2573 Ceratophyllum demersum HOM05D000742 ORTHO05D000729 8.4e-07 58.2 77 35.1
MELO3C021980.2 Cucumis melo HOM05D000742 ORTHO05D003741 8.4e-07 58.2 60 45.0
Lsat_1_v5_gn_8_52100 Lactuca sativa HOM05D000742 ORTHO05D003741 8.4e-07 58.2 122 32.8
Lj1g0009798 Lotus japonicus HOM05D000742 ORTHO05D003741 8.4e-07 58.2 61 44.3
Medtr7g010100 Medicago truncatula HOM05D000742 ORTHO05D003741 8.4e-07 58.2 61 41.0
Os04g0594400 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D000924 8.4e-07 58.2 224 24.6
Pp3c22_22390 Physcomitrium patens HOM05D000742 ORTHO05D000924 8.4e-07 58.2 85 38.8
Potri.017G081400 Populus trichocarpa HOM05D000742 ORTHO05D003741 8.4e-07 58.2 118 29.7
BcaB03g13103 Brassica carinata HOM05D000742 ORTHO05D003741 1.1e-06 57.8 68 42.6
C08p16600 Brassica napus HOM05D000742 ORTHO05D003741 1.1e-06 57.8 68 42.6
MD17G1049200 Malus domestica HOM05D000742 ORTHO05D003741 1.1e-06 57.8 69 40.6
Peaxi162Scf00503g00418 Petunia axillaris HOM05D000742 ORTHO05D003741 1.1e-06 57.8 69 37.7
BcaC08g46217 Brassica carinata HOM05D000742 ORTHO05D000924 1.4e-06 57.4 180 28.9
CARHR014770 Cardamine hirsuta HOM05D000742 ORTHO05D003741 1.4e-06 57.4 68 41.2
Cpa.g.sc161.3 Carica papaya HOM05D000742 ORTHO05D000924 1.4e-06 57.4 72 41.7
Dinv11926 Davidia involucrata HOM05D000742 ORTHO05D000924 1.4e-06 57.4 146 31.5
Duzib251G0013 Durio zibethinus HOM05D000742 ORTHO05D003741 1.4e-06 57.4 69 39.1
PSO017G1771 Papaver somniferum HOM05D000742 ORTHO05D003741 1.4e-06 57.4 71 36.6
Sp3g31480 Schrenkiella parvula HOM05D000742 ORTHO05D000924 1.4e-06 57.4 72 40.3
TWI18G1073 Tripterygium wilfordii HOM05D000742 ORTHO05D003741 1.4e-06 57.4 240 22.9
unitig_22.g5543 Utricularia gibba HOM05D000742 ORTHO05D003741 1.4e-06 57.4 205 26.3
GSVIVG01020030001 Vitis vinifera HOM05D000742 ORTHO05D003741 1.4e-06 57.4 76 36.8
arahy.Tifrunner.gnm1.ann1.D3DSYK Arachis hypogaea HOM05D000742 ORTHO05D003741 1.9e-06 57.0 194 25.8
BcaC07g38733 Brassica carinata HOM05D000742 ORTHO05D003741 1.9e-06 57.0 68 41.2
A08p32010 Brassica napus HOM05D000742 ORTHO05D003741 1.9e-06 57.0 68 41.2
BolC8t49288H Brassica oleracea HOM05D000742 ORTHO05D003741 1.9e-06 57.0 68 41.2
BraA08t35122Z Brassica rapa HOM05D000742 ORTHO05D003741 1.9e-06 57.0 68 41.2
ClCG09G016890 Citrullus lanatus HOM05D000742 ORTHO05D000924 1.9e-06 57.0 86 37.2
PSO478G3055 Papaver somniferum HOM05D000742 ORTHO05D003741 1.9e-06 57.0 71 36.6
TWI34G1045 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 1.9e-06 57.0 75 42.7
Manes.09G139000 Manihot esculenta HOM05D000742 ORTHO05D000924 2.4e-06 56.6 72 41.7
Nitab4.5_0000274g0110 Nicotiana tabacum HOM05D000742 ORTHO05D003741 2.4e-06 56.6 57 43.9
TWI32G0316 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 2.4e-06 56.6 140 30.0
Zm00001eb068910 Zea mays HOM05D000742 ORTHO05D003741 2.4e-06 56.6 195 25.6
Eucgr.G02082 Eucalyptus grandis HOM05D000742 ORTHO05D000924 3.2e-06 56.2 101 32.7
Glyma.18G258600 Glycine max HOM05D000742 ORTHO05D003741 3.2e-06 56.2 181 27.1
Manes.01G187800 Manihot esculenta HOM05D000742 ORTHO05D003741 3.2e-06 56.2 76 36.8
Nitab4.5_0002151g0060 Nicotiana tabacum HOM05D000742 ORTHO05D003741 3.2e-06 56.2 235 23.8
Oeu020208.2 Olea europaea HOM05D000742 ORTHO05D000924 3.2e-06 56.2 101 33.7
BcaC05g25331 Brassica carinata HOM05D000742 ORTHO05D003741 4.1e-06 55.8 68 39.7
C05p12130 Brassica napus HOM05D000742 ORTHO05D003741 4.1e-06 55.8 68 39.7
BolC5t29965H Brassica oleracea HOM05D000742 ORTHO05D003741 4.1e-06 55.8 68 39.7
CANSAT56G0957 Cannabis sativa HOM05D000742 ORTHO05D000924 4.1e-06 55.8 237 26.2
CiPaw.03G028600 Carya illinoinensis HOM05D000742 ORTHO05D003741 4.1e-06 55.8 74 41.9
Cc07_g03230 Coffea canephora HOM05D000742 ORTHO05D003741 4.1e-06 55.8 69 40.6
CsaV3_5G037940 Cucumis sativus L. HOM05D000742 ORTHO05D003741 4.1e-06 55.8 124 31.5
Thhalv10008608m.g Eutrema salsugineum HOM05D000742 ORTHO05D003741 4.1e-06 55.8 68 39.7
Lj4g0001118 Lotus japonicus HOM05D000742 ORTHO05D000924 4.1e-06 55.8 200 26.0
Actinidia25989 Actinidia chinensis HOM05D000742 ORTHO05D000924 5.4e-06 55.5 207 27.1
Aqoxy3G03331 Aquilegia oxysepala HOM05D000742 ORTHO05D003741 5.4e-06 55.5 235 23.4
AT1G14340 Arabidopsis thaliana HOM05D000742 ORTHO05D003741 5.4e-06 55.5 232 26.3
A06p10320 Brassica napus HOM05D000742 ORTHO05D003741 5.4e-06 55.5 68 38.2
COL.COLO4_16965 Corchorus olitorius HOM05D000742 ORTHO05D000924 5.4e-06 55.5 227 25.6
Nitab4.5_0003586g0010 Nicotiana tabacum HOM05D000742 ORTHO05D003741 5.4e-06 55.5 234 24.4
Prupe.1G335700 Prunus persica HOM05D000742 ORTHO05D000924 5.4e-06 55.5 224 24.1
MSTRG.5925 Avicennia marina HOM05D000742 ORTHO05D000924 7.1e-06 55.1 75 40.0
MSTRG.7816 Avicennia marina HOM05D000742 ORTHO05D003741 7.1e-06 55.1 244 25.0
EL10Ac2g02960 Beta vulgaris HOM05D000742 ORTHO05D003741 7.1e-06 55.1 62 41.9
CANSAT64G2914 Cannabis sativa HOM05D000742 ORTHO05D003741 7.1e-06 55.1 240 22.5
Ciclev10012602m.g Citrus clementina HOM05D000742 ORTHO05D003741 7.1e-06 55.1 230 26.5
Glyma.02G019000 Glycine max HOM05D000742 ORTHO05D003741 7.1e-06 55.1 75 36.0
PSO063G5991 Papaver somniferum HOM05D000742 ORTHO05D003741 7.1e-06 55.1 242 23.1
Sed0026338 Sechium edule HOM05D000742 ORTHO05D003741 7.1e-06 55.1 60 41.7
Solyc02g067390.3 Solanum lycopersicum HOM05D000742 ORTHO05D003741 7.1e-06 55.1 87 35.6
PGSC0003DMG400006894 Solanum tuberosum HOM05D000742 ORTHO05D003741 7.1e-06 55.1 87 35.6
Actinidia38431 Actinidia chinensis HOM05D000742 ORTHO05D000924 9.2e-06 54.7 202 27.2
CANSAT78G2418 Cannabis sativa HOM05D000742 ORTHO05D000924 9.2e-06 54.7 216 25.9
ECA234G3726 Erigeron canadensis HOM05D000742 ORTHO05D000924 9.2e-06 54.7 213 23.0
FAN05G4881 Fragaria x ananassa HOM05D000742 ORTHO05D003741 9.2e-06 54.7 196 27.6
Lj2g0018612 Lotus japonicus HOM05D000742 ORTHO05D003741 9.2e-06 54.7 69 39.1
Nn3g18426 Nelumbo nucifera HOM05D000742 ORTHO05D000924 9.2e-06 54.7 198 26.8
Pp3c18_3230 Physcomitrium patens HOM05D000742 ORTHO05D000924 9.2e-06 54.7 72 40.3
GSVIVG01011624001 Vitis vinifera HOM05D000742 ORTHO05D000924 9.2e-06 54.7 222 25.2


User provided reference genes

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