Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 2342.8 1389 100.0
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 0.0e+00 2254.6 1389 96.3
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 2177.5 1389 93.2
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 2171.0 1389 92.6
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 2139.0 1389 91.6
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1960.3 1407 84.2
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 0.0e+00 1484.2 1421 66.5
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 0.0e+00 1426.8 1439 65.9
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1237.2 1447 58.7
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1233.8 1447 58.4
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1199.9 1452 56.6
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1199.5 1526 54.3
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1155.6 1471 54.1
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1154.4 1435 53.8
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1146.3 1421 54.7
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1120.1 1380 56.4
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1114.8 1500 51.0
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1109.7 1456 52.9
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 0.0e+00 1089.3 1418 52.8
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1087.8 1439 53.5
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 2.9e-311 1072.4 1396 52.5
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 3.2e-310 1068.9 1439 53.0
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 4.2e-310 1068.5 1502 50.1
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.2e-309 1067.0 1500 52.5
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.7e-303 1046.6 1532 50.3
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 5.0e-303 1045.0 1477 52.2
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 1.0e-300 1037.3 1495 51.6
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.8e-300 1036.6 1442 52.1
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.0e-299 1033.1 1458 50.3
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 4.8e-298 1028.5 1476 49.4
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 1.2e-296 1023.8 1431 51.9
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 2.0e-296 1023.1 1449 50.0
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.7e-296 1022.7 1524 49.0
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 3.5e-296 1022.3 1501 50.2
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 6.5e-287 991.5 1471 50.6
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 2.7e-285 986.1 1532 49.0
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.3e-284 983.0 1444 49.9
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 2.8e-282 976.1 1507 49.8
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 4.9e-282 975.3 1493 47.8
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 6.3e-282 974.9 1498 50.5
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 1.0e-279 967.6 1543 46.3
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 8.9e-276 954.5 1544 46.6
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 3.7e-274 949.1 1452 46.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 3.9e-271 939.1 1454 48.5
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 2.5e-270 936.4 1429 49.2
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 5.6e-270 935.3 1532 46.8
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.6e-269 933.7 1462 47.7
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 1.8e-268 930.2 1457 45.6
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 1.9e-265 920.2 1505 45.0
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 1.5e-262 910.6 1436 44.6
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 2.0e-259 900.2 1505 47.2
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 4.1e-257 892.5 1434 45.7
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 4.1e-257 892.5 1473 46.1
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 3.9e-255 885.9 1284 50.5
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.6e-253 880.6 1467 45.3
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 6.2e-253 878.6 1422 47.0
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 7.6e-251 871.7 1443 47.2
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 2.1e-248 863.6 1699 42.7
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 3.9e-247 859.4 1571 46.0
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 2.5e-246 856.7 1459 44.8
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 3.3e-246 856.3 1472 44.0
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.6e-245 854.0 1438 45.0
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 5.2e-244 849.0 1455 45.1
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 9.9e-243 844.7 1461 46.9
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 4.2e-241 839.3 1440 46.7
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.9e-239 832.8 1412 42.8
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 5.6e-238 828.9 1473 46.6
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 2.1e-237 827.0 736 65.4
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 5.8e-235 818.9 1492 42.8
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 5.8e-235 818.9 1349 45.2
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 9.9e-235 818.1 1206 50.2
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 3.8e-234 816.2 1486 44.2
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 6.7e-231 805.4 1460 43.2
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 1.5e-230 804.3 1488 44.1
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.3e-226 791.2 1521 41.1
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 1.1e-220 771.5 1486 45.1
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 6.9e-220 768.8 1492 42.6
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 1.3e-215 754.6 1465 43.6
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 3.0e-215 753.4 1239 44.6
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.5e-214 751.1 1523 40.9
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 3.3e-214 750.0 1507 41.3
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 2.4e-212 743.8 1495 42.1
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 9.0e-212 741.9 1416 41.9
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 2.0e-211 740.7 1403 43.3
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 3.8e-210 736.5 1444 42.5
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.6e-208 731.1 1447 42.4
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 1.0e-207 728.4 1434 41.7
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 1.0e-207 728.4 1434 41.7
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 4.8e-205 719.5 1447 41.9
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 2.7e-200 703.7 1398 46.4
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 4.6e-200 703.0 1493 42.6
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 6.7e-199 699.1 1455 40.8
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 2.9e-186 657.1 1491 40.2
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.0e-184 649.0 1090 43.8
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.4e-183 648.3 1434 39.0
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 2.3e-170 604.4 1421 41.4
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 8.0e-160 569.3 604 58.9
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.8e-159 568.2 1534 35.6
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 2.3e-159 567.8 1169 36.5
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.3e-146 524.6 1404 34.2
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 2.1e-144 518.1 1288 37.8
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 3.5e-139 500.7 1493 35.0
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.9e-133 481.1 1321 36.4
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 8.1e-128 463.0 783 42.8
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.5e-121 442.2 1303 33.3
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.1e-120 438.3 641 46.3
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 3.0e-90 338.2 1430 34.0
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 4.1e-79 301.2 815 38.9
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 3.8e-69 268.1 421 52.7
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 6.7e-66 257.3 1323 25.9
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.5e-65 256.1 1373 25.8
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 4.0e-58 231.5 1325 25.8
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 8.8e-58 230.3 975 24.8
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 2.9e-53 215.3 1121 25.9
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 4.2e-52 211.5 283 37.1
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.2e-51 209.9 259 48.6
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 3.9e-45 188.3 391 39.1
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 3.6e-35 155.2 474 39.5
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 8.9e-34 150.6 343 40.5
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 4.4e-33 148.3 198 41.4
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 3.7e-32 145.2 225 53.3
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 1.1e-31 143.7 92 68.5
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 1.9e-28 132.9 308 38.3
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 7.3e-28 131.0 144 57.6
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.2e-25 123.6 281 43.4
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 9.9e-25 120.6 777 27.4
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 1.4e-23 116.7 88 72.7
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 3.5e-22 112.1 64 84.4
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.5e-20 105.9 112 51.8
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 9.5e-20 104.0 69 63.8
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 2.8e-19 102.4 64 67.2
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.5e-17 96.7 125 47.2
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 2.9e-16 92.4 305 28.5
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 4.9e-16 91.7 263 35.4
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 9.2e-15 87.4 79 50.6
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 9.2e-15 87.4 60 61.7
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 4.6e-14 85.1 306 23.9
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 3.3e-12 79.0 57 63.2
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 3.6e-11 75.5 50 64.0
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 4.8e-11 75.1 126 44.4
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 6.2e-11 74.7 50 64.0
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.8e-10 73.2 98 42.9
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.5e-09 70.1 371 30.7
RcHm_v2.0_Chr7g0218771 Rosa chinensis HOM05D004594 ORTHO05D005225 1.5e-09 70.1 89 46.1
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 3.4e-09 68.9 145 31.7
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 3.4e-09 68.9 81 46.9
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 1.3e-08 67.0 106 46.2
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 8.4e-08 64.3 41 63.4
Nn3g17298 Nelumbo nucifera HOM05D004594 ORTHO05D005225 9.3e-07 60.8 70 44.3


User provided reference genes

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