Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.3e-81 305.4 151 100.0
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.3e-81 305.4 151 100.0
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.2e-78 295.0 151 96.7
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.6e-77 291.2 151 96.7
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 8.9e-73 276.9 135 99.3
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 4.8e-66 254.6 151 83.4
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 2.6e-48 195.7 151 68.9
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 3.2e-46 188.7 133 69.9
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 4.8e-42 174.9 138 65.9
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 8.2e-42 174.1 134 64.9
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 1.4e-41 173.3 134 64.2
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 6.5e-39 164.5 138 60.1
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 1.4e-38 163.3 133 58.6
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 4.2e-38 161.8 137 61.3
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 4.2e-38 161.8 134 60.4
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 7.2e-38 161.0 135 58.5
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 1.6e-37 159.8 138 56.5
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 2.1e-37 159.5 151 57.0
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 6.1e-37 157.9 134 61.2
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 1.0e-36 157.1 137 54.7
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 1.0e-36 157.1 151 56.3
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 1.8e-36 156.4 138 53.6
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 1.8e-36 156.4 137 56.9
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 5.1e-36 154.8 138 55.1
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 8.7e-36 154.1 138 57.2
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 1.5e-35 153.3 138 57.2
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 3.3e-35 152.1 151 53.0
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 5.7e-35 151.4 137 59.9
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 5.7e-35 151.4 152 54.6
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 7.4e-35 151.0 151 55.6
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 1.6e-34 149.8 151 55.6
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 2.2e-34 149.4 151 53.6
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 2.8e-34 149.1 132 56.8
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 3.7e-34 148.7 144 54.9
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 3.7e-34 148.7 150 51.3
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 1.1e-33 147.1 152 50.7
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 1.4e-33 146.7 118 64.4
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 5.3e-33 144.8 151 50.3
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 6.9e-33 144.4 133 55.6
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 6.9e-33 144.4 135 54.8
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 1.2e-32 143.7 151 53.6
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 2.0e-32 142.9 138 53.6
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 2.6e-32 142.5 150 52.7
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 4.5e-32 141.7 151 53.0
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 7.7e-32 141.0 151 53.0
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 1.7e-31 139.8 151 51.0
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 6.5e-31 137.9 118 60.2
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 6.5e-31 137.9 125 56.8
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 1.1e-30 137.1 150 50.7
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 2.5e-30 136.0 135 54.1
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 3.2e-30 135.6 138 50.0
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 5.5e-30 134.8 138 47.8
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 5.5e-30 134.8 135 54.1
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 7.2e-30 134.4 109 62.4
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 4.6e-29 131.7 123 53.7
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 1.0e-28 130.6 151 50.3
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 1.1e-27 127.1 151 49.0
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 7.4e-27 124.4 134 49.3
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 4.8e-26 121.7 134 50.7
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 6.3e-26 121.3 112 55.4
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 8.2e-26 120.9 151 47.0
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 1.8e-25 119.8 137 46.7
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 6.9e-25 117.9 107 53.3
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 1.2e-24 117.1 151 47.0
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 1.0e-23 114.0 138 44.2
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 1.2e-21 107.1 83 63.9
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 1.5e-19 100.1 94 50.0
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 7.4e-19 97.8 89 51.7
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.4e-17 93.6 82 53.7
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 3.6e-13 79.0 101 42.6
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 8.0e-13 77.8 101 41.6
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 1.8e-12 76.6 109 36.7
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 2.0e-11 73.2 113 36.3
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 3.3e-11 72.4 104 33.7
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 3.3e-11 72.4 111 35.1
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 4.4e-11 72.0 108 36.1
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 4.4e-11 72.0 102 37.3
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 5.7e-11 71.6 101 36.6
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 5.7e-11 71.6 101 37.6
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 5.7e-11 71.6 103 37.9
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 7.5e-11 71.2 102 36.3
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 7.5e-11 71.2 111 36.0
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 9.7e-11 70.9 101 37.6
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 1.3e-10 70.5 111 34.2
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 1.7e-10 70.1 98 37.8
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 1.7e-10 70.1 102 35.3
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 1.7e-10 70.1 111 33.3
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 1.7e-10 70.1 111 36.0
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 2.8e-10 69.3 102 34.3
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 2.8e-10 69.3 100 37.0
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.8e-10 69.3 109 33.9
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 3.7e-10 68.9 104 37.5
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 3.7e-10 68.9 101 35.6
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 3.7e-10 68.9 104 33.7
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 4.8e-10 68.6 101 36.6
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 4.8e-10 68.6 101 35.6
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 4.8e-10 68.6 104 33.7
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 4.8e-10 68.6 104 33.7
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 4.8e-10 68.6 101 36.6
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 4.8e-10 68.6 104 34.6
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 4.8e-10 68.6 111 33.3
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 4.8e-10 68.6 101 35.6
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 4.8e-10 68.6 101 35.6
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 4.8e-10 68.6 104 34.6
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 4.8e-10 68.6 109 33.9
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 6.3e-10 68.2 98 36.7
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 6.3e-10 68.2 98 37.8
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 6.3e-10 68.2 98 36.7
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 6.3e-10 68.2 98 36.7
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 6.3e-10 68.2 98 36.7
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 6.3e-10 68.2 111 33.3
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 6.3e-10 68.2 111 33.3
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 8.2e-10 67.8 108 35.2
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 8.2e-10 67.8 104 36.5
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 8.2e-10 67.8 111 33.3
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 8.2e-10 67.8 104 32.7
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 8.2e-10 67.8 101 35.6
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 1.1e-09 67.4 113 34.5
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 1.4e-09 67.0 101 34.7
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 1.8e-09 66.6 101 34.7
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 2.4e-09 66.2 109 35.8
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 2.4e-09 66.2 99 37.4
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 2.4e-09 66.2 113 31.9
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 2.4e-09 66.2 111 31.5
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 2.4e-09 66.2 100 34.0
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 2.4e-09 66.2 102 33.3
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 3.1e-09 65.9 111 34.2
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 3.1e-09 65.9 103 37.9
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 3.1e-09 65.9 111 32.4
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-09 65.9 108 33.3
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 3.1e-09 65.9 87 40.2
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 4.1e-09 65.5 101 35.6
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 5.3e-09 65.1 102 32.4
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 5.3e-09 65.1 102 32.4
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 5.3e-09 65.1 102 33.3
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 5.3e-09 65.1 108 32.4
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 5.3e-09 65.1 111 30.6
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 5.3e-09 65.1 130 28.5
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 5.3e-09 65.1 98 34.7
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 7.0e-09 64.7 102 34.3
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 9.1e-09 64.3 104 33.7
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 1.2e-08 63.9 101 33.7
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 1.2e-08 63.9 111 32.4
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 1.6e-08 63.5 96 35.4
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 1.6e-08 63.5 81 43.2
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 1.6e-08 63.5 97 35.1
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 1.6e-08 63.5 113 31.9
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 1.6e-08 63.5 130 31.5
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 2.0e-08 63.2 107 35.5
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 2.0e-08 63.2 94 37.2
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 2.0e-08 63.2 100 33.0
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 2.0e-08 63.2 101 34.7
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 2.7e-08 62.8 109 33.9
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 2.7e-08 62.8 103 33.0
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 2.7e-08 62.8 101 32.7
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 4.5e-08 62.0 82 39.0
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 4.5e-08 62.0 130 31.5
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 5.9e-08 61.6 111 30.6
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 5.9e-08 61.6 94 35.1
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 1.0e-07 60.8 82 40.2
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 1.0e-07 60.8 111 32.4
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 1.0e-07 60.8 109 34.9
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 1.7e-07 60.1 94 30.9
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 1.7e-07 60.1 88 37.5
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 2.2e-07 59.7 94 34.0
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.8e-07 58.9 111 30.6
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 8.5e-07 57.8 92 33.7
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 8.5e-07 57.8 106 33.0
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 1.1e-06 57.4 106 35.8
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 1.5e-06 57.0 93 34.4
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 2.5e-06 56.2 102 32.4
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 2.5e-06 56.2 97 33.0


User provided reference genes

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