Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0569 Fragaria x ananassa HOM05D000822 ORTHO05D016844 3.4e-40 167.9 88 100.0
FAN17G2105 Fragaria x ananassa HOM05D000822 ORTHO05D002021 3.8e-31 137.9 81 91.4
FAN17G2425 Fragaria x ananassa HOM05D000822 ORTHO05D016844 6.4e-31 137.1 71 100.0
FvH4_4g13760 Fragaria vesca HOM05D000822 ORTHO05D002021 8.4e-31 136.7 81 90.1
FAN12G1032 Fragaria x ananassa HOM05D000822 ORTHO05D002021 8.4e-31 136.7 81 90.1
FAN22G2267 Fragaria x ananassa HOM05D000822 ORTHO05D002021 9.3e-30 133.3 81 88.9
FAN12G3168 Fragaria x ananassa HOM05D000822 ORTHO05D002021 1.8e-28 129.0 87 80.5
FAN07G0634 Fragaria x ananassa HOM05D000822 ORTHO05D002021 7.4e-27 123.6 81 82.7
FAN07G1833 Fragaria x ananassa HOM05D000822 ORTHO05D002021 7.4e-27 123.6 81 82.7
RcHm_v2.0_Chr2g0166231 Rosa chinensis HOM05D000822 ORTHO05D002021 6.2e-26 120.6 81 80.2
RcHm_v2.0_Chr4g0442751 Rosa chinensis HOM05D000822 ORTHO05D002021 1.0e-23 113.2 81 75.3
FAN22G1097 Fragaria x ananassa HOM05D000822 ORTHO05D016844 1.3e-23 112.8 86 73.3
FvH4_4g33449 Fragaria vesca HOM05D000002 ORTHO05D000001 2.2e-23 112.1 81 76.5
FvH4_4g33445 Fragaria vesca HOM05D000822 ORTHO05D002021 5.5e-22 107.5 84 72.6
FAN17G2202 Fragaria x ananassa HOM05D000822 ORTHO05D002021 5.5e-22 107.5 72 81.9
FAN22G1969 Fragaria x ananassa HOM05D000822 ORTHO05D002021 5.5e-22 107.5 84 72.6
FAN07G2819 Fragaria x ananassa HOM05D000822 ORTHO05D002021 2.1e-21 105.5 81 75.3
Prupe.1G132200 Prunus persica HOM05D000822 ORTHO05D002021 1.1e-17 93.2 85 58.8
MD13G1041200 Malus domestica HOM05D000822 ORTHO05D002021 1.2e-16 89.7 88 62.5
MD13G1019400 Malus domestica HOM05D000822 ORTHO05D002021 2.0e-16 89.0 86 62.8
MD16G1017500 Malus domestica HOM05D000822 ORTHO05D002021 2.2e-15 85.5 68 66.2
MD16G1017600 Malus domestica HOM05D000822 ORTHO05D002021 2.2e-15 85.5 68 67.6
Potri.010G104900 Populus trichocarpa HOM05D000822 ORTHO05D002021 3.8e-15 84.7 72 59.7
Potri.010G105200 Populus trichocarpa HOM05D000822 ORTHO05D002021 3.8e-15 84.7 72 59.7
Prupe.1G332600 Prunus persica HOM05D000822 ORTHO05D002021 1.1e-14 83.2 84 56.0
Sabra10G0077300 Salix brachista HOM05D000822 ORTHO05D002021 2.5e-14 82.0 89 55.1
Prupe.1G334500 Prunus persica HOM05D000822 ORTHO05D002021 3.2e-14 81.6 84 54.8
FvH4_4g33446 Fragaria vesca HOM05D056006 ORTHO05D046452 9.4e-14 80.1 50 82.0
Manes.17G084733 Manihot esculenta HOM05D000822 ORTHO05D002021 9.4e-14 80.1 80 52.5
CANSAT78G2138 Cannabis sativa HOM05D000822 ORTHO05D002021 1.6e-13 79.3 67 59.7
Manes.17G084800 Manihot esculenta HOM05D000822 ORTHO05D002021 6.1e-13 77.4 80 51.2
Prupe.4G078900 Prunus persica HOM05D000822 ORTHO05D002021 1.5e-11 72.8 66 60.6
Prupe.4G078800 Prunus persica HOM05D000822 ORTHO05D002021 4.3e-11 71.2 68 60.3
TWI53G2103 Tripterygium wilfordii HOM05D000822 ORTHO05D002021 7.4e-11 70.5 68 52.9
Lj6A736G83 Lonicera japonica HOM05D000822 ORTHO05D002021 2.2e-10 68.9 69 52.2
Rhsim09G0088600 Rhododendron simsii HOM05D000822 ORTHO05D002021 3.7e-10 68.2 69 49.3
TWI53G0228 Tripterygium wilfordii HOM05D000822 ORTHO05D002021 4.8e-10 67.8 82 45.1
PGR142G2590 Punica granatum HOM05D000822 ORTHO05D002021 8.2e-10 67.0 83 47.0
Cpa.g.sc2.178 Carica papaya HOM05D000822 ORTHO05D014097 1.1e-09 66.6 80 45.0
THA.LOC104805089 Tarenaya hassleriana HOM05D000822 ORTHO05D002021 1.1e-09 66.6 80 43.8
CsaV3_5G011200 Cucumis sativus L. HOM05D000822 ORTHO05D002021 1.8e-09 65.9 84 42.9
MELO3C026815.2 Cucumis melo HOM05D000822 ORTHO05D002021 2.4e-09 65.5 84 42.9
Lj6C529T7 Lonicera japonica HOM05D000822 ORTHO05D002021 2.4e-09 65.5 83 43.4
AL7G45360 Arabidopsis lyrata HOM05D000822 ORTHO05D002021 3.1e-09 65.1 71 47.9
GSVIVG01011643001 Vitis vinifera HOM05D000822 ORTHO05D002021 3.1e-09 65.1 63 46.0
Actinidia36616 Actinidia chinensis HOM05D000822 ORTHO05D002021 4.1e-09 64.7 69 49.3
CSS0036414 Camellia sinensis var. sinensis HOM05D000822 ORTHO05D002021 1.5e-08 62.8 69 46.4
Lj6A529G69 Lonicera japonica HOM05D000822 ORTHO05D002021 1.5e-08 62.8 83 42.2
ClCG07G005340 Citrullus lanatus HOM05D000822 ORTHO05D002021 2.0e-08 62.4 84 41.7
AL1G26820 Arabidopsis lyrata HOM05D000822 ORTHO05D002021 2.6e-08 62.0 71 46.5
MBI19_g26461_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 2.6e-08 62.0 73 45.2
MBI19_g26463_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 2.6e-08 62.0 73 45.2
Rhsim09G0088800 Rhododendron simsii HOM05D000822 ORTHO05D002021 2.6e-08 62.0 81 39.5
Manes.15G135600 Manihot esculenta HOM05D000822 ORTHO05D002021 3.4e-08 61.6 80 41.2
TWI74G0257 Tripterygium wilfordii HOM05D000822 ORTHO05D002021 4.5e-08 61.2 82 43.9
Ah.06g191500 Amaranthus hybridus HOM05D000822 ORTHO05D002021 5.9e-08 60.8 63 52.4
MBI19_g33821_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D016844 5.9e-08 60.8 76 44.7
Cpa.g.sc2.183 Carica papaya HOM05D000822 ORTHO05D002021 7.7e-08 60.5 75 44.0
Hma1.2p1_0853F.1_g228680 Hydrangea macrophylla HOM05D000822 ORTHO05D002021 7.7e-08 60.5 83 43.4
PGR142G0740 Punica granatum HOM05D000822 ORTHO05D002021 7.7e-08 60.5 82 43.9
Sabra08G0103900 Salix brachista HOM05D000822 ORTHO05D002021 7.7e-08 60.5 80 40.0
Aa31LG1G300 Aethionema arabicum HOM05D000822 ORTHO05D002021 1.0e-07 60.1 69 44.9
EL10Ac2g02895 Beta vulgaris HOM05D000822 ORTHO05D002021 1.0e-07 60.1 81 39.5
EL10Ac2g02898 Beta vulgaris HOM05D000822 ORTHO05D002021 1.0e-07 60.1 81 39.5
COL.COLO4_27641 Corchorus olitorius HOM05D000822 ORTHO05D002021 1.0e-07 60.1 77 44.2
TAR629G3417 Trochodendron aralioides HOM05D000822 ORTHO05D002021 1.0e-07 60.1 69 43.5
AT1G14790 Arabidopsis thaliana HOM05D000822 ORTHO05D002021 1.3e-07 59.7 69 44.9
MSTRG.768 Avicennia marina HOM05D000822 ORTHO05D002021 1.3e-07 59.7 80 42.5
BraA06t24263Z Brassica rapa HOM05D000822 ORTHO05D002021 1.3e-07 59.7 69 44.9
Migut.L01176 Erythranthe guttata HOM05D000822 ORTHO05D002021 1.3e-07 59.7 69 46.4
vmacro13549 Vaccinium macrocarpon HOM05D000822 ORTHO05D002021 1.3e-07 59.7 66 47.0
FvH4_4g33391 Fragaria vesca HOM05D000822 ORTHO05D002021 1.7e-07 59.3 80 38.8
FAN12G1113 Fragaria x ananassa HOM05D000822 ORTHO05D002021 1.7e-07 59.3 80 38.8
PGR142G0514 Punica granatum HOM05D000822 ORTHO05D002021 1.7e-07 59.3 79 44.3
A06p10850 Brassica napus HOM05D000822 ORTHO05D002021 2.2e-07 58.9 69 44.9
CANSAT78G0909 Cannabis sativa HOM05D000822 ORTHO05D002021 2.2e-07 58.9 71 47.9
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 2.9e-07 58.5 69 43.5
BcaC05g25400 Brassica carinata HOM05D000822 ORTHO05D002021 2.9e-07 58.5 69 43.5
BolC5t30018H Brassica oleracea HOM05D000822 ORTHO05D002021 2.9e-07 58.5 69 43.5
BolC5t30023H Brassica oleracea HOM05D000822 ORTHO05D016844 2.9e-07 58.5 69 43.5
Glyma.02G086100 Glycine max HOM05D000822 ORTHO05D002021 2.9e-07 58.5 68 42.6
MBI19_g36760_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 2.9e-07 58.5 81 44.4
RhsimUnG0113800 Rhododendron simsii HOM05D000822 ORTHO05D002021 2.9e-07 58.5 69 44.9
Sopen05g003390 Solanum pennellii HOM05D000822 ORTHO05D002021 2.9e-07 58.5 83 42.2
C05p12740 Brassica napus HOM05D000822 ORTHO05D002021 3.8e-07 58.2 69 43.5
Duzib251G0241 Durio zibethinus HOM05D000822 ORTHO05D002021 3.8e-07 58.2 63 49.2
Potri.008G136100 Populus trichocarpa HOM05D000822 ORTHO05D002021 3.8e-07 58.2 80 40.0
RcHm_v2.0_Chr4g0442681 Rosa chinensis HOM05D000822 ORTHO05D002021 3.8e-07 58.2 80 41.2
VMungo0464G2119 Vigna mungo HOM05D000822 ORTHO05D002021 3.8e-07 58.2 71 42.3
GSVIVG01011645001 Vitis vinifera HOM05D000822 ORTHO05D002021 3.8e-07 58.2 66 42.4
Sp1g13230 Schrenkiella parvula HOM05D000822 ORTHO05D002021 5.0e-07 57.8 69 44.9
arahy.Tifrunner.gnm1.ann1.TJ3454 Arachis hypogaea HOM05D000822 ORTHO05D002021 8.5e-07 57.0 80 38.8
MBI19_g47006_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 8.5e-07 57.0 80 46.2
Rhsim09G0088700 Rhododendron simsii HOM05D000822 ORTHO05D002021 8.5e-07 57.0 70 47.1
Cc11_g06940 Coffea canephora HOM05D000822 ORTHO05D002021 1.1e-06 56.6 69 44.9
Eucgr.B02678 Eucalyptus grandis HOM05D000822 ORTHO05D002021 1.1e-06 56.6 85 37.6
Nitab4.5_0009221g0010 Nicotiana tabacum HOM05D000822 ORTHO05D002021 1.1e-06 56.6 69 47.8
QL12p003120 Quercus lobata HOM05D000822 ORTHO05D002021 1.1e-06 56.6 80 38.8
arahy.Tifrunner.gnm1.ann1.92BDQ3 Arachis hypogaea HOM05D000822 ORTHO05D002021 1.4e-06 56.2 80 38.8
CsaV3_5G011210 Cucumis sativus L. HOM05D000822 ORTHO05D002021 1.4e-06 56.2 83 37.3
vmacro13550 Vaccinium macrocarpon HOM05D000822 ORTHO05D002021 1.4e-06 56.2 69 42.0
Rhsim07G0063900 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.9e-06 55.8 70 44.3
Hund15690 Selenicereus undatus HOM05D000822 ORTHO05D002021 1.9e-06 55.8 64 43.8
Solyc05g007510.4 Solanum lycopersicum HOM05D000822 ORTHO05D002021 1.9e-06 55.8 83 41.0
TAR371G0134 Trochodendron aralioides HOM05D000822 ORTHO05D002021 1.9e-06 55.8 85 40.0
CANSAT78G2101 Cannabis sativa HOM05D000822 ORTHO05D002021 2.5e-06 55.5 73 42.5
Cc11_g06960 Coffea canephora HOM05D000822 ORTHO05D002021 2.5e-06 55.5 77 44.2
ECA232G0215 Erigeron canadensis HOM05D000822 ORTHO05D002021 2.5e-06 55.5 79 41.8
Thhalv10006629m.g Eutrema salsugineum HOM05D000822 ORTHO05D002021 3.2e-06 55.1 68 44.1
Lsat_1_v5_gn_8_35321 Lactuca sativa HOM05D000822 ORTHO05D002021 3.2e-06 55.1 82 39.0
Sc10g0004080 Simmondsia chinensis HOM05D000822 ORTHO05D002021 3.2e-06 55.1 66 43.9
Dinv26358 Davidia involucrata HOM05D000822 ORTHO05D002021 4.2e-06 54.7 61 47.5
Duzib251G0784 Durio zibethinus HOM05D000822 ORTHO05D002021 4.2e-06 54.7 64 51.6
QL12p003141 Quercus lobata HOM05D000822 ORTHO05D002021 4.2e-06 54.7 69 40.6
Sed0005964 Sechium edule HOM05D000822 ORTHO05D002021 4.2e-06 54.7 80 35.0
Carub.0001s1459 Capsella rubella HOM05D000822 ORTHO05D002021 5.5e-06 54.3 69 42.0
CiPaw.06G054400 Carya illinoinensis HOM05D000822 ORTHO05D002021 5.5e-06 54.3 69 43.5
Lj6A528T46 Lonicera japonica HOM05D000822 ORTHO05D002021 5.5e-06 54.3 83 38.6
Lalb_Chr10g0095661 Lupinus albus HOM05D000822 ORTHO05D002021 5.5e-06 54.3 86 34.9
Rhsim07G0040500 Rhododendron simsii HOM05D000822 ORTHO05D002021 5.5e-06 54.3 69 43.5
Sed0015641 Sechium edule HOM05D000822 ORTHO05D002021 5.5e-06 54.3 81 43.2
Actinidia12401 Actinidia chinensis HOM05D000822 ORTHO05D002021 7.2e-06 53.9 66 45.5
Lj2g0008190 Lotus japonicus HOM05D000822 ORTHO05D002021 7.2e-06 53.9 84 36.9
Phvul.003G016600 Phaseolus vulgaris HOM05D000822 ORTHO05D002021 7.2e-06 53.9 68 39.7
PGSC0003DMG400031261 Solanum tuberosum HOM05D000822 ORTHO05D002021 7.2e-06 53.9 80 41.2
PGSC0003DMG400031269 Solanum tuberosum HOM05D000822 ORTHO05D002021 7.2e-06 53.9 83 41.0
CARHR015330 Cardamine hirsuta HOM05D000822 ORTHO05D002021 9.4e-06 53.5 66 43.9
Cc11_g06950 Coffea canephora HOM05D000822 ORTHO05D002021 9.4e-06 53.5 69 44.9
Cc11_g06970 Coffea canephora HOM05D000822 ORTHO05D002021 9.4e-06 53.5 67 44.8
Duzib248G0041 Durio zibethinus HOM05D000822 ORTHO05D002021 9.4e-06 53.5 71 42.3
Eucgr.B02681 Eucalyptus grandis HOM05D000822 ORTHO05D002021 9.4e-06 53.5 85 37.6
RcHm_v2.0_Chr4g0442701 Rosa chinensis HOM05D000822 ORTHO05D002021 9.4e-06 53.5 70 41.4


User provided reference genes

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