Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0411 Fragaria x ananassa HOM05D005056 ORTHO05D006487 7.8e-65 250.4 132 100.0
FAN12G0483 Fragaria x ananassa HOM05D005056 ORTHO05D006487 7.8e-65 250.4 132 100.0
RcHm_v2.0_Chr7g0219421 Rosa chinensis HOM05D005056 ORTHO05D006487 1.1e-42 176.8 123 79.7
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 4.2e-42 174.9 123 78.9
FvH4_5g27692 Fragaria vesca HOM05D005056 ORTHO05D006487 2.1e-41 172.6 123 78.0
FAN13G0846 Fragaria x ananassa HOM05D005056 ORTHO05D006487 2.1e-41 172.6 123 78.0
FAN04G0894 Fragaria x ananassa HOM05D005056 ORTHO05D006487 6.0e-41 171.0 123 77.2
FvH4_4g18081 Fragaria vesca HOM05D005056 ORTHO05D006487 1.0e-40 170.2 118 79.7
FAN08G2023 Fragaria x ananassa HOM05D005056 ORTHO05D006487 9.3e-34 147.1 123 68.3
MD17G1177700 Malus domestica HOM05D005056 ORTHO05D006487 1.2e-33 146.7 125 67.2
Prupe.1G206800 Prunus persica HOM05D005056 ORTHO05D006487 1.2e-33 146.7 125 68.0
Eucgr.H00317 Eucalyptus grandis HOM05D005056 ORTHO05D006487 4.6e-33 144.8 122 64.8
Manes.16G069500 Manihot esculenta HOM05D005056 ORTHO05D006487 6.1e-33 144.4 121 63.6
Potri.013G125800 Populus trichocarpa HOM05D005056 ORTHO05D006487 1.8e-32 142.9 113 69.9
Sabra13G0104700 Salix brachista HOM05D005056 ORTHO05D006487 8.7e-32 140.6 113 69.0
Sabra13G0105000 Salix brachista HOM05D005056 ORTHO05D006487 8.7e-32 140.6 113 69.0
Sabra13G0105200 Salix brachista HOM05D005056 ORTHO05D006487 8.7e-32 140.6 113 69.0
Sabra13G0105300 Salix brachista HOM05D005056 ORTHO05D006487 8.7e-32 140.6 113 69.0
Ciclev10019145m.g Citrus clementina HOM05D005056 ORTHO05D006487 1.1e-31 140.2 124 61.3
Atru.chr3.3232 Acer truncatum HOM05D005056 ORTHO05D006487 3.3e-31 138.7 121 63.6
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 5.7e-31 137.9 118 65.3
PGR142G4138 Punica granatum HOM05D005056 ORTHO05D006487 7.4e-31 137.5 123 63.4
QL93p1902_0036 Quercus lobata HOM05D005056 ORTHO05D006487 1.3e-30 136.7 114 68.4
Haze_01366 Corylus avellana HOM05D005056 ORTHO05D006487 1.7e-30 136.3 121 63.6
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 2.2e-30 136.0 112 68.8
Glyma.02G137100 Glycine max HOM05D005056 ORTHO05D006487 6.3e-30 134.4 124 60.5
Dinv04468 Davidia involucrata HOM05D005056 ORTHO05D006487 8.2e-30 134.0 124 61.3
Lj4g0012801 Lotus japonicus HOM05D005056 ORTHO05D006487 4.1e-29 131.7 121 56.2
MBI18_g06087_MAGBIO Magnolia biondii HOM05D005056 ORTHO05D006487 9.1e-29 130.6 130 58.5
TAR636G2681 Trochodendron aralioides HOM05D005056 ORTHO05D006487 9.1e-29 130.6 123 63.4
Cpa.g.sc114.8 Carica papaya HOM05D005056 ORTHO05D006487 1.2e-28 130.2 119 62.2
CsaV3_6G007040 Cucumis sativus L. HOM05D005056 ORTHO05D006487 1.5e-28 129.8 115 64.3
Glyma.07G208300 Glycine max HOM05D005056 ORTHO05D006487 1.5e-28 129.8 124 58.1
Aa31LG1G25370 Aethionema arabicum HOM05D005056 ORTHO05D006487 2.0e-28 129.4 120 62.5
Lj1g0023120 Lotus japonicus HOM05D005056 ORTHO05D006487 2.0e-28 129.4 122 61.5
CSS0024905 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 3.4e-28 128.6 117 64.1
COL.COLO4_09146 Corchorus olitorius HOM05D005056 ORTHO05D006487 3.4e-28 128.6 111 64.0
Hma1.2p1_0150F.1_g066790 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 4.5e-28 128.3 113 61.9
MELO3C022426.2 Cucumis melo HOM05D005056 ORTHO05D006487 5.9e-28 127.9 115 62.6
Sed0010490 Sechium edule HOM05D005056 ORTHO05D006487 1.0e-27 127.1 119 60.5
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 1.3e-27 126.7 111 64.0
Duzib128G0002 Durio zibethinus HOM05D005056 ORTHO05D006487 1.7e-27 126.3 109 65.1
Atru.chr4.1428 Acer truncatum HOM05D005056 ORTHO05D006487 2.2e-27 125.9 121 60.3
Hma1.2p1_0150F.1_g066780 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 2.2e-27 125.9 128 57.0
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 2.2e-27 125.9 124 60.5
ClCG06G001090 Citrullus lanatus HOM05D005056 ORTHO05D006487 6.5e-27 124.4 111 64.0
Phvul.003G296300 Phaseolus vulgaris HOM05D005056 ORTHO05D006487 1.1e-26 123.6 124 55.6
arahy.Tifrunner.gnm1.ann1.K7ZH1T Arachis hypogaea HOM05D005056 ORTHO05D006487 1.4e-26 123.2 115 59.1
VMungo0251G2998 Vigna mungo HOM05D005056 ORTHO05D006487 1.9e-26 122.9 117 59.0
Gohir.A04G120600 Gossypium hirsutum HOM05D005056 ORTHO05D006487 2.5e-26 122.5 108 63.0
Gorai.012G150100 Gossypium raimondii HOM05D005056 ORTHO05D006487 2.5e-26 122.5 121 58.7
Medtr4g087270 Medicago truncatula HOM05D005056 ORTHO05D006487 2.5e-26 122.5 120 59.2
Cc03_g13950 Coffea canephora HOM05D005056 ORTHO05D006487 3.2e-26 122.1 119 62.2
Rhsim13G0194600 Rhododendron simsii HOM05D005056 ORTHO05D006656 3.2e-26 122.1 117 61.5
PSO170G2549 Papaver somniferum HOM05D005056 ORTHO05D006487 5.5e-26 121.3 121 58.7
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 9.4e-26 120.6 102 70.6
Peaxi162Scf00568g00417 Petunia axillaris HOM05D005056 ORTHO05D006487 9.4e-26 120.6 124 58.1
arahy.Tifrunner.gnm1.ann1.X1H480 Arachis hypogaea HOM05D005056 ORTHO05D006487 1.2e-25 120.2 115 58.3
Psat7g121360 Pisum sativum HOM05D005056 ORTHO05D006487 1.2e-25 120.2 121 59.5
SalBow1G2014 Salvia bowleyana HOM05D005056 ORTHO05D006487 1.6e-25 119.8 135 55.6
Gohir.D04G162100 Gossypium hirsutum HOM05D005056 ORTHO05D006487 3.6e-25 118.6 108 61.1
Solyc11g072320.3 Solanum lycopersicum HOM05D005056 ORTHO05D006487 4.7e-25 118.2 116 56.9
Solyc11g072390.2 Solanum lycopersicum HOM05D005056 ORTHO05D006487 4.7e-25 118.2 112 58.0
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 4.7e-25 118.2 112 58.0
Sopen11g030040 Solanum pennellii HOM05D005056 ORTHO05D006487 4.7e-25 118.2 112 58.0
PSO302G0034 Papaver somniferum HOM05D005056 ORTHO05D006487 6.1e-25 117.9 117 60.7
GSVIVG01038137001 Vitis vinifera HOM05D005056 ORTHO05D006487 6.1e-25 117.9 122 55.7
CANSAT56G3616 Cannabis sativa HOM05D005056 ORTHO05D006487 7.9e-25 117.5 132 55.3
AL4G42470 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.4e-24 116.7 115 59.1
CSS0004898 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 1.8e-24 116.3 105 64.8
HanXRQChr14g0439801 Helianthus annuus HOM05D005056 ORTHO05D006487 2.3e-24 115.9 113 64.6
AT2G43650 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 3.9e-24 115.2 113 58.4
vmacro03868 Vaccinium macrocarpon HOM05D005056 ORTHO05D006487 3.9e-24 115.2 119 57.1
DCAR_019081 Daucus carota HOM05D005056 ORTHO05D006487 5.1e-24 114.8 118 59.3
Sc08g0000580 Simmondsia chinensis HOM05D005056 ORTHO05D006487 8.8e-24 114.0 124 58.1
SGA_v2.0_scaffold289G47281 Striga asiatica HOM05D005056 ORTHO05D006487 2.0e-23 112.8 114 57.0
Sp4g25750 Schrenkiella parvula HOM05D005056 ORTHO05D006487 9.7e-23 110.5 115 60.0
Migut.N03070 Erythranthe guttata HOM05D005056 ORTHO05D006487 1.3e-22 110.2 116 57.8
TPR.G1297 Trifolium pratense HOM05D005056 ORTHO05D006487 1.7e-22 109.8 122 55.7
Lalb_Chr16g0384481 Lupinus albus HOM05D005056 ORTHO05D006487 2.2e-22 109.4 105 60.0
BolC4t28563H Brassica oleracea HOM05D005056 ORTHO05D006487 2.8e-22 109.0 131 52.7
EL10Ac9g21710 Beta vulgaris HOM05D005056 ORTHO05D006487 3.7e-22 108.6 122 55.7
Nitab4.5_0001802g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 3.7e-22 108.6 112 58.0
Os01g0104800 Oryza sativa ssp. japonica HOM05D005056 ORTHO05D006487 3.7e-22 108.6 113 54.0
Nitab4.5_0002129g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 6.3e-22 107.8 113 58.4
TPR.G23553 Trifolium pratense HOM05D005056 ORTHO05D006487 1.4e-21 106.7 128 50.0
Ah.01g019270 Amaranthus hybridus HOM05D005056 ORTHO05D006487 1.8e-21 106.3 110 59.1
CARHR138830 Cardamine hirsuta HOM05D005056 ORTHO05D006487 2.4e-21 105.9 113 55.8
CDE04G2996 Ceratophyllum demersum HOM05D005056 ORTHO05D006487 3.1e-21 105.5 113 55.8
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 4.1e-21 105.1 113 55.8
THA.LOC104803998 Tarenaya hassleriana HOM05D005056 ORTHO05D006487 5.3e-21 104.8 110 59.1
Carub.0004s2618 Capsella rubella HOM05D005056 ORTHO05D006487 1.5e-20 103.2 115 54.8
Hund06242 Selenicereus undatus HOM05D005056 ORTHO05D006487 1.5e-20 103.2 116 59.5
BcaB01g03369 Brassica carinata HOM05D005056 ORTHO05D006487 3.4e-20 102.1 115 57.4
Oeu018048.1 Olea europaea HOM05D005056 ORTHO05D006487 1.0e-19 100.5 101 61.4
C03p29070 Brassica napus HOM05D005056 ORTHO05D006487 1.7e-19 99.8 114 56.1
Zm00001eb034060 Zea mays HOM05D005056 ORTHO05D006487 2.2e-19 99.4 111 50.5
BcaC01g05222 Brassica carinata HOM05D005056 ORTHO05D006487 3.8e-19 98.6 114 55.3
ATR0763G045 Amborella trichopoda HOM05D005056 ORTHO05D006487 6.5e-19 97.8 130 50.8
A03p24390 Brassica napus HOM05D005056 ORTHO05D006487 6.5e-19 97.8 109 57.8
HPP92_014516 Vanilla planifolia HOM05D005056 ORTHO05D006487 6.5e-19 97.8 107 52.3
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 1.1e-18 97.1 113 53.1
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 1.9e-18 96.3 109 53.2
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 1.9e-18 96.3 113 53.1
C04p70610 Brassica napus HOM05D005056 ORTHO05D006487 3.2e-18 95.5 131 49.6
ECA238G2929 Erigeron canadensis HOM05D005056 ORTHO05D006487 7.2e-18 94.4 97 59.8
BraA04t18751Z Brassica rapa HOM05D005056 ORTHO05D006487 9.4e-18 94.0 122 50.8
AUR62016753 Chenopodium quinoa HOM05D005056 ORTHO05D006487 9.4e-18 94.0 120 51.7
QL10p055605 Quercus lobata HOM05D005056 ORTHO05D006487 1.2e-17 93.6 108 55.6
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 1.6e-17 93.2 123 48.8
A04p32930 Brassica napus HOM05D005056 ORTHO05D006487 1.6e-17 93.2 118 51.7
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 3.6e-17 92.0 128 46.9
AT3G28230 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 1.8e-16 89.7 97 55.7
Ca_18642_v3 Cicer arietinum L. HOM05D005056 ORTHO05D006487 3.9e-16 88.6 108 53.7
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 1.5e-15 86.7 77 61.0
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 1.5e-15 86.7 133 44.4
FAN07G0517 Fragaria x ananassa HOM05D030428 ORTHO05D006487 2.0e-15 86.3 71 71.8
AL5G17740 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 2.6e-15 85.9 101 53.5
AL677U10020 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 9.7e-15 84.0 64 67.2
A04p32940 Brassica napus HOM05D005056 ORTHO05D001240 3.7e-14 82.0 76 59.2
CiPaw.02G100700 Carya illinoinensis HOM05D005056 ORTHO05D006487 4.8e-14 81.6 76 63.2
SMO367G0368 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 6.3e-14 81.3 128 43.8
C04p70630 Brassica napus HOM05D005056 ORTHO05D006487 1.4e-13 80.1 87 57.5
BolC4t28565H Brassica oleracea HOM05D005056 ORTHO05D006487 1.4e-13 80.1 87 57.5
Oeu018046.1 Olea europaea HOM05D005056 ORTHO05D006487 1.4e-13 80.1 64 65.6
BolC3t15261H Brassica oleracea HOM05D000026 ORTHO05D000094 5.3e-13 78.2 99 53.5
BraA03t11648Z Brassica rapa HOM05D005056 ORTHO05D006487 7.0e-13 77.8 98 54.1
BcaB06g29334 Brassica carinata HOM05D005056 ORTHO05D006487 2.2e-11 72.8 116 44.0
MCO16G233 Micromonas commoda HOM05D005594 ORTHO05D006403 2.1e-09 66.2 84 46.4
BcaB06g29336 Brassica carinata HOM05D005056 ORTHO05D006487 4.0e-08 62.0 64 59.4
Cre09.g394399 Chlamydomonas reinhardtii HOM05D005056 ORTHO05D006403 7.5e-07 57.8 81 42.0


User provided reference genes

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