Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 0.0e+00 1124.4 575 100.0
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 0.0e+00 1117.4 575 99.7
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 0.0e+00 1098.2 584 96.9
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 0.0e+00 1077.4 575 96.0
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.2e-282 976.1 581 89.2
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 9.4e-272 939.9 567 85.4
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 3.0e-270 934.9 568 85.4
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 3.7e-268 927.9 574 83.1
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 3.4e-266 921.4 567 82.7
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 2.2e-265 918.7 570 81.9
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 2.7e-263 911.8 573 82.2
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 4.8e-260 901.0 573 81.0
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 4.5e-258 894.4 573 80.5
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 2.2e-257 892.1 553 83.2
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.2e-257 892.1 570 79.5
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.2e-257 892.1 570 79.6
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 2.9e-257 891.7 574 80.0
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 3.8e-257 891.3 574 80.1
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 3.6e-255 884.8 565 80.5
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 3.6e-255 884.8 575 78.8
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 3.6e-255 884.8 575 79.5
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 6.7e-254 880.6 564 78.5
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 8.8e-254 880.2 564 80.1
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 1.1e-253 879.8 570 78.9
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 2.6e-253 878.6 574 77.5
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.3e-253 878.2 570 78.9
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 9.7e-253 876.7 574 78.9
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 1.6e-250 869.4 574 76.5
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 4.5e-250 867.8 565 78.8
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 5.9e-250 867.5 574 75.8
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 2.9e-249 865.1 565 78.6
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 5.0e-249 864.4 568 77.8
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 5.0e-249 864.4 566 77.2
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 5.0e-249 864.4 566 77.2
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 6.5e-249 864.0 573 76.8
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 8.5e-249 863.6 629 73.3
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 8.5e-249 863.6 579 76.7
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 1.8e-246 855.9 554 77.8
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 3.0e-246 855.1 579 77.4
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 5.7e-245 850.9 566 77.6
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 4.5e-242 841.3 568 75.9
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 7.7e-242 840.5 553 78.5
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.1e-240 836.6 574 74.9
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 9.4e-240 833.6 560 76.1
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 2.1e-239 832.4 556 77.5
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 8.0e-239 830.5 571 75.0
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.8e-238 829.3 571 72.7
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 8.8e-238 827.0 569 75.6
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 2.6e-237 825.5 570 74.6
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 3.4e-237 825.1 568 73.9
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 9.8e-237 823.5 566 74.0
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 2.2e-236 822.4 568 73.8
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 2.8e-236 822.0 570 75.3
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 2.8e-236 822.0 572 73.6
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 1.8e-235 819.3 570 73.9
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 3.1e-235 818.5 573 73.3
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 4.1e-235 818.1 570 74.2
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 7.0e-235 817.4 577 73.7
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 1.2e-234 816.6 577 74.0
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 2.7e-234 815.5 570 74.6
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 2.7e-234 815.5 568 74.8
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 7.7e-234 813.9 569 74.9
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 1.7e-233 812.8 569 74.3
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 2.9e-233 812.0 568 74.3
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 5.0e-233 811.2 568 74.3
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 5.0e-233 811.2 589 71.0
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.9e-232 809.3 568 74.1
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.3e-230 802.4 615 69.9
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 3.0e-230 802.0 581 72.1
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 8.9e-230 800.4 560 75.7
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.8e-228 795.4 566 71.6
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.4e-227 793.1 567 72.1
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 2.9e-225 785.4 590 70.2
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 9.5e-224 780.4 570 72.1
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.2e-223 780.0 569 72.4
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 1.8e-222 776.2 592 69.4
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 6.8e-222 774.2 567 71.1
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 3.5e-218 761.9 584 70.4
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 1.3e-217 760.0 611 67.9
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 2.5e-216 755.7 543 74.6
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 1.2e-215 753.4 562 70.1
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.2e-213 746.9 595 67.6
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 5.8e-213 744.6 559 70.3
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 3.5e-210 735.3 578 66.8
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 1.7e-209 733.0 573 66.7
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 3.1e-206 722.2 574 66.2
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.6e-202 709.9 515 71.3
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 3.9e-201 705.3 430 84.7
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 4.8e-183 645.2 696 53.2
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.1e-176 624.0 430 75.3
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 4.9e-172 608.6 572 57.2
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 2.5e-168 596.3 573 55.3
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.0e-157 560.1 570 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 4.7e-146 522.3 585 49.2
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 9.1e-142 508.1 560 52.7
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 1.4e-126 457.6 318 74.8
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.3e-107 393.3 279 73.1
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 6.8e-105 385.6 271 72.3
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 4.1e-94 349.7 224 80.8
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 1.0e-92 345.1 311 59.5
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 7.8e-77 292.4 194 73.2
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 7.6e-56 222.6 298 49.0
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 7.9e-53 212.6 166 64.5
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 4.5e-48 196.8 241 41.1
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 3.6e-45 187.2 117 81.2
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 1.9e-43 181.4 143 65.7
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 7.4e-43 179.5 120 72.5
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.5e-40 171.8 120 70.0
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 7.4e-35 152.9 109 73.4
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 2.6e-32 144.4 134 56.0
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.6e-29 135.2 190 47.9
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 9.1e-25 119.4 96 59.4
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.6e-21 107.5 185 38.9
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.7e-21 107.1 189 37.6
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 8.0e-21 106.3 118 51.7
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 4.8e-18 97.1 83 63.9
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.6e-13 82.0 104 45.2
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.7e-13 81.3 146 41.1
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 8.8e-12 76.3 55 72.7
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.4e-11 73.9 175 34.3
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 7.5e-11 73.2 210 29.5
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 1.8e-09 68.6 57 64.9
RcHm_v2.0_Chr4g0399371 Rosa chinensis HOM05D006362 ORTHO05D341637 3.1e-09 67.8 45 75.6
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 1.2e-08 65.9 153 32.7
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 4.5e-08 63.9 135 32.6
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 1.3e-07 62.4 50 62.0
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 2.3e-07 61.6 37 78.4
CSS0030339 Camellia sinensis var. sinensis HOM05D003230 ORTHO05D003680 9.5e-06 56.2 89 40.4


User provided reference genes

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