Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 7.2e-95 350.5 171 100.0
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 7.2e-95 350.5 171 100.0
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.3e-83 310.5 172 90.7
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.5e-79 298.9 172 87.8
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 5.5e-79 297.7 170 87.6
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 1.3e-56 223.4 168 67.3
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 4.7e-46 188.3 180 56.1
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 2.4e-45 186.0 172 58.1
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 5.2e-45 184.9 120 74.2
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 6.8e-45 184.5 175 57.7
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 7.6e-44 181.0 170 58.2
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 7.6e-44 181.0 171 55.0
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 2.9e-43 179.1 182 53.3
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 3.8e-43 178.7 161 54.0
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 3.8e-43 178.7 152 57.9
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 2.4e-42 176.0 171 52.0
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 3.2e-42 175.6 163 57.7
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 7.1e-42 174.5 158 54.4
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 9.3e-42 174.1 145 57.2
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 1.2e-41 173.7 173 54.9
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.2e-41 173.7 117 68.4
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.6e-41 173.3 153 57.5
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.1e-41 172.9 166 54.2
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 2.1e-41 172.9 158 57.6
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.1e-41 172.9 125 64.0
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 3.5e-41 172.2 129 62.8
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 4.6e-41 171.8 171 52.6
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 4.6e-41 171.8 158 55.1
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 6.0e-41 171.4 133 60.9
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 7.8e-41 171.0 111 68.5
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.0e-40 170.6 173 53.8
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.3e-40 170.2 127 63.8
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 3.9e-40 168.7 107 67.3
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 5.1e-40 168.3 121 63.6
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 5.1e-40 168.3 147 57.8
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 2.5e-39 166.0 107 67.3
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 3.3e-39 165.6 124 61.3
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 4.3e-39 165.2 107 68.2
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 7.3e-39 164.5 182 50.5
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.6e-38 163.3 179 49.2
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 1.6e-38 163.3 140 56.4
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 2.8e-38 162.5 122 63.1
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 3.6e-38 162.2 109 67.0
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 3.6e-38 162.2 171 49.1
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 3.6e-38 162.2 146 54.1
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.1e-37 160.6 122 60.7
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 1.1e-37 160.6 165 53.9
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 2.4e-37 159.5 106 79.2
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 5.3e-37 158.3 149 53.7
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.3e-35 153.7 158 54.4
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 2.2e-35 152.9 158 54.4
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 6.4e-35 151.4 202 44.1
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 1.1e-34 150.6 141 52.5
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 2.4e-34 149.4 114 60.5
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 3.2e-34 149.1 98 69.4
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 4.2e-34 148.7 244 39.3
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 7.1e-34 147.9 96 66.7
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 1.6e-33 146.7 151 51.7
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.5e-31 140.2 104 61.5
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 1.9e-31 139.8 267 36.0
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 2.5e-31 139.4 107 57.0
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 4.3e-31 138.7 112 58.0
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 7.3e-31 137.9 107 56.1
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.6e-30 136.7 133 49.6
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 1.6e-30 136.7 106 58.5
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 2.1e-30 136.3 124 54.0
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 3.6e-30 135.6 111 55.0
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 4.8e-30 135.2 131 50.4
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 6.2e-30 134.8 105 58.1
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 6.2e-30 134.8 122 52.5
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 6.2e-30 134.8 105 56.2
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 1.1e-29 134.0 110 55.5
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 1.1e-29 134.0 110 55.5
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 1.1e-29 134.0 106 56.6
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 1.1e-29 134.0 109 51.4
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.1e-29 134.0 105 57.1
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.4e-29 133.7 131 49.6
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 1.8e-29 133.3 105 56.2
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.4e-29 132.9 110 51.8
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.4e-29 132.9 110 51.8
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 2.4e-29 132.9 157 45.2
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.1e-29 132.5 110 53.6
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 3.1e-29 132.5 109 54.1
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 3.1e-29 132.5 107 56.1
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 4.0e-29 132.1 105 56.2
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 4.0e-29 132.1 106 55.7
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 4.0e-29 132.1 107 56.1
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 5.3e-29 131.7 115 54.8
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 5.3e-29 131.7 112 55.4
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 6.9e-29 131.3 112 54.5
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 6.9e-29 131.3 124 50.0
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 6.9e-29 131.3 113 52.2
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 9.0e-29 131.0 93 63.4
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 9.0e-29 131.0 171 40.4
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 9.0e-29 131.0 105 56.2
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.2e-28 130.6 109 56.0
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 1.2e-28 130.6 162 44.4
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 1.2e-28 130.6 110 50.9
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 1.2e-28 130.6 148 44.6
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 1.2e-28 130.6 106 53.8
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 1.5e-28 130.2 105 55.2
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 1.5e-28 130.2 105 55.2
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 1.5e-28 130.2 105 55.2
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 1.5e-28 130.2 105 55.2
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 1.5e-28 130.2 105 55.2
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 1.5e-28 130.2 105 55.2
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.5e-28 130.2 109 50.5
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 1.5e-28 130.2 106 54.7
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.0e-28 129.8 101 57.4
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 2.0e-28 129.8 147 45.6
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 2.6e-28 129.4 109 55.0
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 2.6e-28 129.4 105 54.3
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 2.6e-28 129.4 108 55.6
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 2.6e-28 129.4 160 43.1
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 2.6e-28 129.4 132 47.7
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.6e-28 129.4 112 51.8
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 3.4e-28 129.0 106 54.7
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 3.4e-28 129.0 112 51.8
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 3.4e-28 129.0 112 51.8
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 4.5e-28 128.6 105 55.2
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 4.5e-28 128.6 125 48.0
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 4.5e-28 128.6 105 55.2
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 4.5e-28 128.6 150 44.7
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 5.8e-28 128.3 142 44.4
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 5.8e-28 128.3 105 54.3
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 5.8e-28 128.3 105 54.3
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 7.6e-28 127.9 105 55.2
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 7.6e-28 127.9 102 57.8
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 9.9e-28 127.5 112 51.8
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 9.9e-28 127.5 109 55.0
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.3e-27 127.1 134 48.5
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.7e-27 126.7 139 47.5
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 1.7e-27 126.7 147 46.3
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 1.7e-27 126.7 132 47.7
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 2.2e-27 126.3 112 52.7
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 2.2e-27 126.3 105 55.2
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 2.9e-27 125.9 159 44.0
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.9e-27 125.9 151 45.7
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.8e-27 125.6 136 47.8
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 3.8e-27 125.6 105 54.3
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 3.8e-27 125.6 105 55.2
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 4.9e-27 125.2 127 47.2
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 6.4e-27 124.8 112 50.9
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 6.4e-27 124.8 105 55.2
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 8.4e-27 124.4 105 53.3
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 1.4e-26 123.6 120 50.0
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 1.4e-26 123.6 105 54.3
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.4e-26 122.9 140 47.9
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 2.4e-26 122.9 105 53.3
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 3.2e-26 122.5 105 53.3
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.6e-25 120.2 105 52.4
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.6e-25 120.2 102 53.9
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 1.6e-25 120.2 105 48.6
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.6e-25 120.2 105 53.3
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 2.1e-25 119.8 127 48.0
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.1e-25 119.8 105 52.4
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.0e-24 117.5 164 42.7
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 8.7e-24 114.4 155 41.3
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 4.3e-23 112.1 62 77.4
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 9.6e-23 110.9 108 57.4
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.1e-21 107.5 130 43.1
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.8e-21 106.7 97 50.5
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.6e-20 102.8 82 61.0
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.3e-19 100.5 128 41.4
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.3e-19 100.5 128 41.4
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 4.3e-15 85.5 89 51.7
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 9.6e-15 84.3 58 62.1
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 1.6e-14 83.6 58 62.1
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 8.2e-14 81.3 59 57.6
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 1.0e-11 74.3 100 40.0
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 1.3e-11 73.9 94 43.6
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 2.9e-11 72.8 56 51.8
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 8.4e-11 71.2 58 56.9
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 1.4e-10 70.5 107 41.1
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 2.7e-09 66.2 55 52.7
TPR.G36109 Trifolium pratense HOM05D003884 ORTHO05D004482 2.7e-09 66.2 66 50.0
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 2.7e-09 66.2 98 40.8
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 4.6e-09 65.5 109 41.3
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 2.3e-08 63.2 101 37.6
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 6.7e-08 61.6 130 37.7


User provided reference genes

Program Settings