Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0168 Fragaria x ananassa HOM05D003997 ORTHO05D002698 3.0e-131 471.9 237 100.0
FvH4_4g00560 Fragaria vesca HOM05D003997 ORTHO05D002698 3.3e-130 468.4 237 99.2
RcHm_v2.0_Chr4g0386011 Rosa chinensis HOM05D003997 ORTHO05D002698 1.2e-111 406.8 243 86.4
FAN12G3167 Fragaria x ananassa HOM05D003997 ORTHO05D002698 7.4e-82 307.8 156 100.0
FAN12G2504 Fragaria x ananassa HOM05D003997 ORTHO05D002698 1.3e-73 280.4 142 100.0
FAN17G2484 Fragaria x ananassa HOM05D003997 ORTHO05D002698 8.2e-73 277.7 142 99.3
FAN22G0547 Fragaria x ananassa HOM05D003997 ORTHO05D002698 7.7e-71 271.2 142 96.5
MD06G1011100 Malus domestica HOM05D003997 ORTHO05D002698 3.7e-65 252.3 272 54.8
Prupe.7G027600 Prunus persica HOM05D003997 ORTHO05D002698 3.1e-64 249.2 268 54.5
MD03G1130200 Malus domestica HOM05D003997 ORTHO05D002698 5.9e-63 245.0 264 54.9
Nn2g14387 Nelumbo nucifera HOM05D003997 ORTHO05D002698 1.0e-43 181.0 262 44.7
TAR623G1175 Trochodendron aralioides HOM05D003997 ORTHO05D002698 1.0e-43 181.0 263 45.6
Prupe.7G091500 Prunus persica HOM05D003997 ORTHO05D002698 2.3e-43 179.9 268 44.8
TWI74G0953 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 4.0e-43 179.1 262 44.7
TWI53G0181 Tripterygium wilfordii HOM05D003997 ORTHO05D002698 5.2e-43 178.7 262 44.7
ATR0730G052 Amborella trichopoda HOM05D003997 ORTHO05D002698 8.9e-43 177.9 206 52.9
Cc06_g06830 Coffea canephora HOM05D003997 ORTHO05D002698 8.9e-43 177.9 275 44.0
Manes.08G035900 Manihot esculenta HOM05D003997 ORTHO05D002698 8.9e-43 177.9 288 44.4
MD14G1042400 Malus domestica HOM05D003997 ORTHO05D002698 1.2e-42 177.6 214 51.4
Cpa.g.sc17.105 Carica papaya HOM05D003997 ORTHO05D002698 2.0e-42 176.8 236 50.0
Dinv25067 Davidia involucrata HOM05D003997 ORTHO05D002698 2.6e-42 176.4 287 43.9
Thecc.05G108200 Theobroma cacao HOM05D003997 ORTHO05D002698 4.4e-42 175.6 236 48.7
RcHm_v2.0_Chr7g0223381 Rosa chinensis HOM05D003997 ORTHO05D002698 5.8e-42 175.3 272 44.9
Aqoxy1G01867 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 7.5e-42 174.9 258 45.0
Potri.016G067100 Populus trichocarpa HOM05D003997 ORTHO05D002698 7.5e-42 174.9 225 48.9
PSO675G1782 Papaver somniferum HOM05D003997 ORTHO05D002698 1.3e-41 174.1 285 44.6
QL07p027111 Quercus lobata HOM05D003997 ORTHO05D002698 1.7e-41 173.7 241 47.7
Cfa020087 Carpinus fangiana HOM05D003997 ORTHO05D002698 2.2e-41 173.3 252 46.4
DCAR_013448 Daucus carota HOM05D003997 ORTHO05D002698 2.2e-41 173.3 270 43.7
Lj3A736G17 Lonicera japonica HOM05D003997 ORTHO05D002698 2.2e-41 173.3 246 45.9
Nitab4.5_0014391g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 2.2e-41 173.3 261 46.0
Atru.chr8.1304 Acer truncatum HOM05D003997 ORTHO05D002698 3.7e-41 172.6 288 42.4
Sabra16G0068400 Salix brachista HOM05D003997 ORTHO05D002698 3.7e-41 172.6 225 48.4
GSVIVG01022501001 Vitis vinifera HOM05D003997 ORTHO05D002698 3.7e-41 172.6 214 50.5
Actinidia37765 Actinidia chinensis HOM05D003997 ORTHO05D002698 4.9e-41 172.2 237 46.0
CANSAT35G1644 Cannabis sativa HOM05D003997 ORTHO05D002698 8.3e-41 171.4 290 42.4
CiPaw.08G072600 Carya illinoinensis HOM05D003997 ORTHO05D002698 8.3e-41 171.4 285 43.9
CiPaw.15G185300 Carya illinoinensis HOM05D003997 ORTHO05D002698 8.3e-41 171.4 291 43.6
Eucgr.H00426 Eucalyptus grandis HOM05D003997 ORTHO05D002698 1.1e-40 171.0 213 49.3
PSO732G0769 Papaver somniferum HOM05D003997 ORTHO05D002698 1.1e-40 171.0 285 44.2
RcHm_v2.0_Chr3g0476631 Rosa chinensis HOM05D003997 ORTHO05D002698 1.1e-40 171.0 226 49.1
Solyc04g017680.3 Solanum lycopersicum HOM05D003997 ORTHO05D002698 1.1e-40 171.0 258 46.1
Sopen04g008760 Solanum pennellii HOM05D003997 ORTHO05D002698 1.9e-40 170.2 258 45.7
Aqoxy4G00923 Aquilegia oxysepala HOM05D003997 ORTHO05D002698 4.1e-40 169.1 255 44.7
COL.COLO4_29520 Corchorus olitorius HOM05D003997 ORTHO05D002698 7.0e-40 168.3 225 48.9
Nitab4.5_0000082g0420 Nicotiana tabacum HOM05D003997 ORTHO05D002698 7.0e-40 168.3 213 49.8
Nitab4.5_0009392g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 7.0e-40 168.3 213 49.8
THA.LOC109116862 Tarenaya hassleriana HOM05D003997 ORTHO05D002698 7.0e-40 168.3 255 44.7
Hma1.2p1_2082F.1_g313570 Hydrangea macrophylla HOM05D003997 ORTHO05D002698 9.2e-40 167.9 237 46.4
Ciclev10013709m.g Citrus clementina HOM05D003997 ORTHO05D002698 1.2e-39 167.5 213 49.8
Sc06g0010610 Simmondsia chinensis HOM05D003997 ORTHO05D002698 1.6e-39 167.2 216 47.7
Duzib128G1254 Durio zibethinus HOM05D003997 ORTHO05D002698 2.0e-39 166.8 225 48.4
Nitab4.5_0021549g0010 Nicotiana tabacum HOM05D003997 ORTHO05D002698 2.0e-39 166.8 206 51.0
Sed0019356 Sechium edule HOM05D003997 ORTHO05D002698 2.0e-39 166.8 262 43.5
MSTRG.10419 Avicennia marina HOM05D003997 ORTHO05D002698 6.0e-39 165.2 205 49.8
FAN02G0475 Fragaria x ananassa HOM05D003997 ORTHO05D002698 6.0e-39 165.2 287 43.2
FAN05G3201 Fragaria x ananassa HOM05D003997 ORTHO05D002698 6.0e-39 165.2 288 42.7
HPP92_017694 Vanilla planifolia HOM05D003997 ORTHO05D002698 7.8e-39 164.9 202 49.0
Migut.O00931 Erythranthe guttata HOM05D003997 ORTHO05D002698 1.7e-38 163.7 266 43.2
QL03p055008 Quercus lobata HOM05D003997 ORTHO05D002698 1.7e-38 163.7 215 48.4
Ah.15g098860 Amaranthus hybridus HOM05D003997 ORTHO05D002698 2.3e-38 163.3 235 44.7
FvH4_6g20730 Fragaria vesca HOM05D003997 ORTHO05D002698 2.3e-38 163.3 264 44.3
Migut.L01852 Erythranthe guttata HOM05D003997 ORTHO05D002698 3.0e-38 162.9 266 43.2
Gorai.002G234000 Gossypium raimondii HOM05D003997 ORTHO05D002698 3.0e-38 162.9 223 48.4
FAN14G5955 Fragaria x ananassa HOM05D003997 ORTHO05D002698 3.9e-38 162.5 265 43.8
Gohir.A01G200200 Gossypium hirsutum HOM05D003997 ORTHO05D002698 3.9e-38 162.5 227 47.6
CSS0008111 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 6.6e-38 161.8 283 42.0
CSS0023244 Camellia sinensis var. sinensis HOM05D003997 ORTHO05D002698 1.9e-37 160.2 224 47.3
Gohir.D01G190300 Gossypium hirsutum HOM05D003997 ORTHO05D002698 1.9e-37 160.2 221 48.4
Oeu020171.1 Olea europaea HOM05D003997 ORTHO05D002698 1.9e-37 160.2 198 53.0
Lsat_1_v5_gn_4_40160 Lactuca sativa HOM05D003997 ORTHO05D002698 3.3e-37 159.5 220 46.8
vmacro07504 Vaccinium macrocarpon HOM05D003997 ORTHO05D002698 5.6e-37 158.7 257 44.7
SGA_v2.0_scaffold392G50675 Striga asiatica HOM05D003997 ORTHO05D002698 7.3e-37 158.3 202 48.5
unitig_8.g3554 Utricularia gibba HOM05D003997 ORTHO05D002698 7.3e-37 158.3 202 50.5
BraA02t09164Z Brassica rapa HOM05D003997 ORTHO05D002698 1.6e-36 157.1 240 44.2
A02p42340 Brassica napus HOM05D003997 ORTHO05D002698 2.1e-36 156.8 240 44.2
HanXRQChr17g0562561 Helianthus annuus HOM05D003997 ORTHO05D002698 2.1e-36 156.8 223 45.3
CsaV3_1G014590 Cucumis sativus L. HOM05D003997 ORTHO05D002698 3.6e-36 156.0 267 40.1
Psat6g101760 Pisum sativum HOM05D003997 ORTHO05D002698 3.6e-36 156.0 218 45.9
ECA234G3695 Erigeron canadensis HOM05D003997 ORTHO05D002698 4.7e-36 155.6 203 47.3
Carub.0007s1240 Capsella rubella HOM05D003997 ORTHO05D002698 6.2e-36 155.2 256 43.8
ClCG01G012560 Citrullus lanatus HOM05D003997 ORTHO05D002698 6.2e-36 155.2 207 48.3
Carub.0001s4137 Capsella rubella HOM05D003997 ORTHO05D002698 8.0e-36 154.8 248 44.0
Rhsim03G0061700 Rhododendron simsii HOM05D003997 ORTHO05D002698 8.0e-36 154.8 203 47.3
Aa31LG11G1160 Aethionema arabicum HOM05D003997 ORTHO05D002698 1.1e-35 154.5 186 51.6
Peaxi162Scf00002g03712 Petunia axillaris HOM05D003997 ORTHO05D002698 1.1e-35 154.5 201 49.8
Phvul.008G070600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 1.1e-35 154.5 205 46.8
BcaB02g09651 Brassica carinata HOM05D003997 ORTHO05D002698 1.8e-35 153.7 241 43.2
BolC2t12279H Brassica oleracea HOM05D003997 ORTHO05D002698 1.8e-35 153.7 241 43.2
MBI19_g30302_MAGBIO Magnolia biondii HOM05D003997 ORTHO05D002698 1.8e-35 153.7 296 40.2
BcaB07g29840 Brassica carinata HOM05D003997 ORTHO05D002698 2.3e-35 153.3 212 45.8
AT4G28360 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 3.1e-35 152.9 256 43.8
Glyma.18G227500 Glycine max HOM05D003997 ORTHO05D002698 3.1e-35 152.9 222 44.6
BcaC03g18154 Brassica carinata HOM05D003997 ORTHO05D002698 5.2e-35 152.1 240 42.9
BcaC03g18159 Brassica carinata HOM05D003997 ORTHO05D002698 5.2e-35 152.1 240 42.9
Glyma.09G264400 Glycine max HOM05D003997 ORTHO05D002698 5.2e-35 152.1 241 44.4
C02p62220 Brassica napus HOM05D003997 ORTHO05D002698 6.8e-35 151.8 196 48.5
AL1G60620 Arabidopsis lyrata HOM05D003997 ORTHO05D002698 8.9e-35 151.4 210 48.1
AT1G52370 Arabidopsis thaliana HOM05D003997 ORTHO05D002698 1.2e-34 151.0 255 43.1
Gohir.A09G132800 Gossypium hirsutum HOM05D003997 ORTHO05D002698 1.2e-34 151.0 217 46.5
Sp2g25660 Schrenkiella parvula HOM05D003997 ORTHO05D002698 1.2e-34 151.0 186 49.5
MELO3C004760.2 Cucumis melo HOM05D003997 ORTHO05D002698 1.5e-34 150.6 219 44.7
BcaC01g02477 Brassica carinata HOM05D003997 ORTHO05D002698 2.6e-34 149.8 239 42.7
C03p64380 Brassica napus HOM05D003997 ORTHO05D002698 2.6e-34 149.8 235 43.0
CARHR236070 Cardamine hirsuta HOM05D003997 ORTHO05D002698 4.4e-34 149.1 242 42.6
AUR62017549 Chenopodium quinoa HOM05D003997 ORTHO05D002698 4.4e-34 149.1 215 45.6
AUR62015091 Chenopodium quinoa HOM05D003997 ORTHO05D002698 5.8e-34 148.7 214 45.8
EL10Ac7g16269 Beta vulgaris HOM05D003997 ORTHO05D002698 7.5e-34 148.3 210 45.7
SalBow5G1795 Salvia bowleyana HOM05D003997 ORTHO05D002698 7.5e-34 148.3 220 46.4
Ca_12342_v3 Cicer arietinum L. HOM05D003997 ORTHO05D002698 9.8e-34 147.9 214 44.9
Thhalv10003962m.g Eutrema salsugineum HOM05D001982 ORTHO05D003938 1.3e-33 147.5 212 45.8
Lj2g0021502 Lotus japonicus HOM05D003997 ORTHO05D002698 1.3e-33 147.5 219 46.6
Lalb_Chr05g0221411 Lupinus albus HOM05D003997 ORTHO05D002698 1.3e-33 147.5 261 39.5
Lalb_Chr16g0386841 Lupinus albus HOM05D003997 ORTHO05D002698 1.3e-33 147.5 268 38.1
Os01g0616500 Oryza sativa ssp. japonica HOM05D003997 ORTHO05D002698 1.7e-33 147.1 200 46.0
BraA06t25868Z Brassica rapa HOM05D003997 ORTHO05D002698 3.7e-33 146.0 243 42.8
RhsimUnG0113000 Rhododendron simsii HOM05D003997 ORTHO05D002698 3.7e-33 146.0 150 55.3
Medtr1g040020 Medicago truncatula HOM05D003997 ORTHO05D002698 4.9e-33 145.6 219 45.2
VMungo1383G3620 Vigna mungo HOM05D003997 ORTHO05D002698 6.4e-33 145.2 200 46.5
BolC3t18692H Brassica oleracea HOM05D003997 ORTHO05D002698 1.9e-32 143.7 186 46.8
Zm00001eb095190 Zea mays HOM05D003997 ORTHO05D002698 7.1e-32 141.7 192 46.4
SEGI_26891 Sequoiadendron giganteum HOM05D003997 ORTHO05D002698 9.2e-32 141.4 191 47.6
Phvul.008G070900 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 2.7e-31 139.8 151 53.0
SHI07013 Sapria himalayana HOM05D003997 ORTHO05D002698 3.5e-31 139.4 154 55.2
arahy.Tifrunner.gnm1.ann1.W16VAI Arachis hypogaea HOM05D003997 ORTHO05D002698 3.0e-30 136.3 269 38.7
TPR.G30221 Trifolium pratense HOM05D003997 ORTHO05D002698 6.6e-30 135.2 171 50.3
arahy.Tifrunner.gnm1.ann1.2ECS7R Arachis hypogaea HOM05D003997 ORTHO05D002698 1.5e-29 134.0 269 37.9
arahy.Tifrunner.gnm1.ann1.RN4U32 Arachis hypogaea HOM05D003997 ORTHO05D002698 1.5e-29 134.0 269 37.9
arahy.Tifrunner.gnm1.ann1.4C6UH4 Arachis hypogaea HOM05D003997 ORTHO05D002698 3.3e-29 132.9 268 37.3
arahy.Tifrunner.gnm1.ann1.7B1PRD Arachis hypogaea HOM05D003997 ORTHO05D002698 3.3e-29 132.9 268 37.3
arahy.Tifrunner.gnm1.ann1.ZAYD4R Arachis hypogaea HOM05D003997 ORTHO05D002698 3.3e-29 132.9 268 37.3
Gorai.006G147800 Gossypium raimondii HOM05D003997 ORTHO05D002698 5.6e-29 132.1 123 60.2
Rhsim03G0061200 Rhododendron simsii HOM05D003997 ORTHO05D002698 5.6e-29 132.1 161 50.9
Hund20962 Selenicereus undatus HOM05D003997 ORTHO05D002698 5.6e-29 132.1 219 42.0
arahy.Tifrunner.gnm1.ann1.4LVT1K Arachis hypogaea HOM05D003997 ORTHO05D002698 8.9e-27 124.8 162 46.3
arahy.Tifrunner.gnm1.ann1.RXW997 Arachis hypogaea HOM05D003997 ORTHO05D002698 7.6e-26 121.7 237 38.4
CARHR060900 Cardamine hirsuta HOM05D003997 ORTHO05D002698 7.6e-26 121.7 236 37.7
Nitab4.5_0007356g0020 Nicotiana tabacum HOM05D003997 ORTHO05D002698 1.6e-23 114.0 109 59.6
CDE02G4432 Ceratophyllum demersum HOM05D003997 ORTHO05D002698 2.7e-23 113.2 125 54.4
Haze_20104 Corylus avellana HOM05D003997 ORTHO05D002698 4.6e-23 112.5 235 36.6
MD12G1043400 Malus domestica HOM05D003997 ORTHO05D002698 1.7e-22 110.5 180 42.8
CAN.G1237.44 Capsicum annuum HOM05D003997 ORTHO05D002698 8.6e-22 108.2 272 36.4
Pp3c8_16210 Physcomitrium patens HOM05D003997 ORTHO05D002698 2.5e-21 106.7 163 42.9
PGSC0003DMG400034098 Solanum tuberosum HOM05D003997 ORTHO05D002698 4.3e-21 105.9 151 47.0
Phvul.008G071600 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 4.7e-20 102.4 105 54.3
MD12G1043300 Malus domestica HOM05D003997 ORTHO05D002698 6.2e-20 102.1 101 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3244 Anthoceros agrestis HOM05D003997 ORTHO05D002698 8.1e-20 101.7 181 39.2
SMO228G0153 Selaginella moellendorffii HOM05D003997 ORTHO05D002698 2.4e-19 100.1 206 36.4
PGR142G0313 Punica granatum HOM05D003997 ORTHO05D002698 3.1e-19 99.8 212 37.7
Mapoly0001s0445 Marchantia polymorpha HOM05D003997 ORTHO05D002698 7.6e-18 95.1 151 38.4
RhsimUnG0113200 Rhododendron simsii HOM05D003997 ORTHO05D002698 5.4e-16 89.0 103 50.5
RhsimUnG0112900 Rhododendron simsii HOM05D003997 ORTHO05D002698 7.1e-16 88.6 101 51.5
Rhsim03G0061600 Rhododendron simsii HOM05D003997 ORTHO05D002698 2.7e-15 86.7 100 51.0
Rhsim03G0060600 Rhododendron simsii HOM05D003997 ORTHO05D002698 5.1e-14 82.4 116 50.0
Phvul.010G107200 Phaseolus vulgaris HOM05D003997 ORTHO05D002698 1.6e-12 77.4 105 47.6
Solyc03g044440.2 Solanum lycopersicum HOM05D003997 ORTHO05D002698 1.6e-12 77.4 151 39.1
Sopen03g008580 Solanum pennellii HOM05D003997 ORTHO05D002698 4.8e-12 75.9 213 32.4
Rhsim03G0060300 Rhododendron simsii HOM05D003997 ORTHO05D002698 4.4e-10 69.3 141 36.9
Duzib093G0527 Durio zibethinus HOM05D003997 ORTHO05D002698 7.6e-10 68.6 131 38.9
BolSC101t60211H Brassica oleracea HOM05D003997 ORTHO05D002698 1.1e-08 64.7 52 57.7
CBR_g23715 Chara braunii HOM05D003997 ORTHO05D002698 1.1e-08 64.7 122 36.1
MCO07G289 Micromonas commoda HOM05D003997 ORTHO05D002698 3.2e-08 63.2 107 36.4
Psat6g152720 Pisum sativum HOM05D003997 ORTHO05D002698 7.1e-08 62.0 93 45.2
PRCOL_00001286 Prasinoderma coloniale HOM05D003997 ORTHO05D002698 1.6e-07 60.8 104 34.6
Cre05.g242950 Chlamydomonas reinhardtii HOM05D003997 ORTHO05D002698 2.7e-07 60.1 108 36.1


User provided reference genes

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