Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1729.1 951 100.0
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 0.0e+00 1392.1 796 97.4
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1301.6 796 92.7
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1298.1 826 89.1
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1225.3 796 88.3
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1203.0 795 83.9
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 1.2e-252 877.1 851 60.8
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 5.4e-240 835.1 853 58.4
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 9.4e-160 568.5 860 45.5
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 2.0e-154 550.8 866 46.5
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 1.4e-150 538.1 862 44.7
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 9.7e-149 531.9 877 43.2
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 4.8e-148 529.6 863 44.4
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 6.3e-140 502.7 881 43.1
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 1.2e-138 498.4 866 42.8
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 1.2e-138 498.4 866 42.8
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 4.2e-136 490.0 907 42.0
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 9.8e-133 478.8 876 40.6
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 8.6e-129 465.7 838 43.3
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 1.5e-128 464.9 921 39.2
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.6e-127 461.5 889 39.0
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 6.1e-127 459.5 895 41.0
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 8.9e-126 455.7 890 38.7
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 5.7e-125 453.0 891 42.0
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 1.8e-123 448.0 848 40.4
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 4.1e-123 446.8 923 39.1
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.1e-120 438.7 882 40.4
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 4.0e-118 430.3 842 38.8
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.6e-117 427.6 907 40.1
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 4.4e-117 426.8 889 37.1
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 8.3e-116 422.5 844 39.7
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 2.4e-115 421.0 904 38.3
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 3.2e-115 420.6 876 38.6
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 1.2e-114 418.7 627 47.2
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.3e-112 410.6 919 38.6
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 8.9e-110 402.5 925 38.7
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 3.4e-109 400.6 841 39.6
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 4.4e-109 400.2 862 36.9
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 1.3e-108 398.7 918 36.6
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 4.9e-108 396.7 850 38.6
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 7.0e-107 392.9 823 37.9
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 3.9e-105 387.1 846 36.6
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 1.1e-104 385.6 861 37.2
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 1.9e-104 384.8 845 36.3
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.4e-102 378.6 871 38.9
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.8e-102 378.3 847 37.9
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 4.0e-102 377.1 887 38.4
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 8.9e-102 375.9 857 36.8
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 8.9e-102 375.9 831 37.4
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 2.9e-100 370.9 818 36.7
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 6.4e-100 369.8 910 33.2
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 3.2e-99 367.5 842 36.9
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 3.2e-99 367.5 860 35.6
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.3e-97 361.3 922 36.0
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.9e-96 358.2 940 34.3
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 8.1e-95 352.8 921 33.3
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.4e-94 351.3 910 34.8
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 4.0e-94 350.5 973 35.7
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 2.6e-93 347.8 861 34.0
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 9.9e-93 345.9 872 35.8
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 2.9e-92 344.4 917 35.4
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 1.1e-91 342.4 828 35.7
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 2.4e-91 341.3 841 34.5
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 3.5e-90 337.4 856 37.9
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 1.3e-89 335.5 848 34.4
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 5.1e-89 333.6 879 32.4
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 6.6e-89 333.2 842 34.4
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 8.7e-89 332.8 873 34.0
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 3.6e-87 327.4 889 33.4
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 4.7e-87 327.0 856 33.9
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 2.4e-86 324.7 881 32.2
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 2.4e-86 324.7 843 34.5
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 4.0e-86 323.9 872 32.6
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.2e-85 322.4 846 33.9
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.2e-85 322.4 846 33.9
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 3.4e-85 320.9 380 49.2
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 5.8e-85 320.1 928 32.8
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 9.9e-85 319.3 806 34.0
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.3e-84 318.9 863 33.1
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 7.1e-83 313.2 865 34.1
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 6.0e-82 310.1 899 33.9
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.3e-81 308.9 827 34.0
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.9e-80 305.1 800 36.4
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 3.3e-80 304.3 848 34.4
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.2e-74 285.8 829 32.9
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 1.2e-74 285.8 849 34.3
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 7.4e-72 276.6 890 32.2
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 6.2e-71 273.5 769 34.5
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.4e-68 263.1 141 99.3
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 2.5e-67 261.5 823 30.7
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.3e-55 222.6 908 30.9
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.1e-54 218.0 273 46.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.5e-53 215.7 533 34.9
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 5.9e-53 213.8 867 28.7
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.9e-52 211.5 166 68.1
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 8.2e-47 193.4 236 50.8
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 5.9e-45 187.2 275 41.5
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 2.9e-44 184.9 157 56.1
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 1.9e-43 182.2 720 29.9
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 8.8e-41 173.3 632 33.9
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.1e-40 172.9 556 32.2
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 8.5e-36 156.8 575 30.8
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 5.7e-32 144.1 136 55.1
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 7.7e-29 133.7 136 55.1
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 2.9e-28 131.7 136 55.9
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 5.0e-28 131.0 750 27.2
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 6.5e-28 130.6 132 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.1e-27 129.8 385 29.9
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.6e-26 125.9 142 52.8
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 2.1e-26 125.6 133 48.1
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 8.0e-26 123.6 146 49.3
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.8e-25 122.5 137 51.8
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.0e-25 121.7 690 26.5
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 3.4e-24 118.2 867 25.0
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 7.5e-24 117.1 140 41.4
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 3.7e-23 114.8 137 43.1
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.7e-23 114.8 137 51.1
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 4.8e-23 114.4 142 44.4
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 4.8e-23 114.4 212 37.3
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 4.5e-21 107.8 80 61.2
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 5.9e-21 107.5 119 52.1
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 1.3e-20 106.3 299 27.4
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 8.5e-20 103.6 589 26.8
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 1.4e-14 86.3 116 52.6
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.6e-13 82.8 69 52.2
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 5.9e-13 80.9 127 36.2
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 1.7e-12 79.3 142 40.8
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 5.0e-12 77.8 70 54.3
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.9e-11 75.9 136 36.8
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 1.9e-11 75.9 66 69.7
Potri.001G001250 Populus trichocarpa HOM05D004493 ORTHO05D005117 5.5e-11 74.3 80 53.8
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 2.8e-10 72.0 70 51.4
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.6e-10 71.6 70 50.0
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 4.4e-08 64.7 274 31.4
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 2.8e-07 62.0 117 32.5
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.8e-06 59.3 83 38.6


User provided reference genes

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