Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3836 Fragaria x ananassa HOM05D001129 ORTHO05D025614 7.0e-130 467.2 226 100.0
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.7e-81 305.8 196 79.6
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 3.8e-67 258.8 196 67.3
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 7.1e-66 254.6 196 66.3
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 1.8e-53 213.4 216 55.6
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 3.8e-51 205.7 196 57.7
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 7.2e-50 201.4 169 61.5
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.9e-49 198.0 216 52.3
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 1.0e-48 197.6 196 55.6
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 1.3e-48 197.2 196 54.6
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.9e-48 195.7 197 54.8
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 5.1e-48 195.3 195 53.8
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 8.7e-48 194.5 196 54.6
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.3e-47 192.6 196 54.1
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 9.7e-47 191.0 196 52.0
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 2.8e-46 189.5 196 54.1
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 3.7e-46 189.1 194 53.6
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 4.8e-46 188.7 194 54.6
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 6.3e-46 188.3 196 53.6
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 1.1e-45 187.6 194 54.6
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 1.1e-45 187.6 194 53.6
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.4e-45 187.2 196 53.1
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 1.4e-45 187.2 194 53.6
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 1.4e-45 187.2 196 54.6
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 1.8e-45 186.8 196 54.6
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 1.8e-45 186.8 216 50.0
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 2.4e-45 186.4 194 52.6
Cpa.g.sc2.304 Carica papaya HOM05D001129 ORTHO05D003814 2.4e-45 186.4 198 52.0
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 5.3e-45 185.3 194 53.6
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 5.3e-45 185.3 216 49.5
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 1.2e-44 184.1 216 48.1
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 1.5e-44 183.7 194 52.1
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 2.0e-44 183.3 196 52.6
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 2.6e-44 183.0 196 52.0
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 2.6e-44 183.0 196 52.0
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 5.9e-44 181.8 194 52.6
TPR.G27380 Trifolium pratense HOM05D001129 ORTHO05D003814 2.9e-43 179.5 195 51.3
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 3.8e-43 179.1 194 51.0
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.5e-43 177.9 198 49.0
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.5e-43 177.9 198 49.0
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 8.5e-43 177.9 194 51.5
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 8.5e-43 177.9 194 50.5
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 8.5e-43 177.9 194 52.1
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 1.9e-42 176.8 196 50.0
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 2.5e-42 176.4 194 49.5
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 3.2e-42 176.0 198 48.5
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.2e-42 176.0 198 48.5
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 3.2e-42 176.0 198 49.0
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 4.2e-42 175.6 194 51.0
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 9.4e-42 174.5 194 50.5
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.7e-41 172.9 194 49.0
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.7e-41 172.9 194 49.0
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 6.1e-41 171.8 194 49.5
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 6.1e-41 171.8 194 51.0
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 6.1e-41 171.8 194 50.0
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 6.1e-41 171.8 194 51.0
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 6.1e-41 171.8 197 50.8
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 7.9e-41 171.4 194 49.5
Oeu015568.1 Olea europaea HOM05D001129 ORTHO05D003814 7.9e-41 171.4 194 49.0
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 1.0e-40 171.0 196 49.0
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 1.4e-40 170.6 194 49.0
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.8e-40 170.2 194 49.0
Actinidia11621 Actinidia chinensis HOM05D001129 ORTHO05D003814 2.3e-40 169.9 196 49.5
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 2.3e-40 169.9 196 47.4
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 3.0e-40 169.5 196 49.0
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 3.9e-40 169.1 194 50.0
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 3.9e-40 169.1 193 48.7
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 6.7e-40 168.3 194 49.5
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 8.8e-40 167.9 194 48.5
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 1.5e-39 167.2 194 48.5
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 2.0e-39 166.8 196 48.5
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 2.5e-39 166.4 194 46.9
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 2.5e-39 166.4 194 49.5
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 3.3e-39 166.0 199 48.7
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 5.7e-39 165.2 194 47.4
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 5.7e-39 165.2 194 47.4
Haze_24463 Corylus avellana HOM05D001129 ORTHO05D003814 7.4e-39 164.9 196 49.0
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 1.3e-38 164.1 196 48.0
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 1.7e-38 163.7 198 46.0
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.7e-38 163.7 198 46.5
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 1.7e-38 163.7 198 46.0
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 1.7e-38 163.7 196 47.4
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 2.8e-38 162.9 198 46.5
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 2.8e-38 162.9 198 46.5
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 2.8e-38 162.9 198 46.5
FAN06G3753 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.8e-38 162.9 80 98.8
FAN09G1141 Fragaria x ananassa HOM05D001129 ORTHO05D025614 2.8e-38 162.9 80 98.8
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 2.8e-38 162.9 194 47.4
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 3.7e-38 162.5 198 46.0
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 3.7e-38 162.5 193 47.7
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 4.8e-38 162.2 198 45.5
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 4.8e-38 162.2 198 46.0
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 6.3e-38 161.8 196 44.9
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 6.3e-38 161.8 196 47.4
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 8.2e-38 161.4 198 46.0
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 1.1e-37 161.0 194 45.9
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 1.1e-37 161.0 194 47.4
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 1.4e-37 160.6 194 45.4
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 1.8e-37 160.2 194 47.4
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 1.8e-37 160.2 198 45.5
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 2.4e-37 159.8 198 45.5
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 2.4e-37 159.8 203 44.8
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 3.1e-37 159.5 192 47.9
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 4.1e-37 159.1 191 46.6
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 5.3e-37 158.7 203 44.3
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 1.2e-36 157.5 176 50.6
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.5e-36 157.1 203 43.8
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.5e-36 157.1 194 45.9
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 1.5e-36 157.1 197 44.7
FvH4_3g40413 Fragaria vesca HOM05D001129 ORTHO05D003814 2.6e-36 156.4 135 63.0
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 2.6e-36 156.4 194 45.4
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.0e-35 154.5 220 42.7
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 2.9e-35 152.9 195 44.6
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 2.9e-35 152.9 195 44.6
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 2.9e-35 152.9 195 44.6
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 5.0e-35 152.1 203 43.3
RcHm_v2.0_Chr5g0072941 Rosa chinensis HOM05D000530 ORTHO05D003814 6.5e-35 151.8 196 45.9
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 4.2e-34 149.1 196 45.4
HPP92_006786 Vanilla planifolia HOM05D001129 ORTHO05D003814 1.2e-33 147.5 194 43.3
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 2.3e-32 143.3 192 44.8
FAN13G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.7e-32 141.7 72 97.2
FAN13G3149 Fragaria x ananassa HOM05D001129 ORTHO05D025614 6.7e-32 141.7 72 97.2
FAN18G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.7e-32 141.7 72 97.2
RcHm_v2.0_Chr1g0333951 Rosa chinensis HOM05D001129 ORTHO05D003814 2.0e-31 140.2 115 63.5
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 4.4e-31 139.0 127 56.7
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 4.4e-31 139.0 207 41.1
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 2.4e-29 133.3 214 36.9
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 9.1e-29 131.3 116 57.8
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.2e-28 131.0 194 37.1
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 1.2e-28 131.0 115 56.5
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 2.0e-28 130.2 116 58.6
FAN21G2271 Fragaria x ananassa HOM05D001129 ORTHO05D003814 7.7e-28 128.3 61 95.1
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 7.7e-28 128.3 192 39.1
FAN01G1484 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.7e-27 127.1 65 96.9
BraA09t42010Z Brassica rapa HOM05D001129 ORTHO05D003814 5.5e-26 122.1 113 57.5
Mapoly0029s0118 Marchantia polymorpha HOM05D001129 ORTHO05D003814 4.7e-25 119.0 191 37.7
A09p66710 Brassica napus HOM05D001129 ORTHO05D003814 5.2e-24 115.5 199 40.2
RcHm_v2.0_Chr5g0072861 Rosa chinensis HOM05D000162 ORTHO05D000090 8.8e-24 114.8 167 41.9
Ca_23248_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 2.6e-23 113.2 189 39.7
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 5.7e-23 112.1 192 35.4
AagrBONN_evm.TU.Sc2ySwM_362.374 Anthoceros agrestis HOM05D001129 ORTHO05D003814 4.8e-22 109.0 217 34.6
CBR_g45246 Chara braunii HOM05D001129 ORTHO05D003814 1.6e-20 104.0 192 34.4
CBR_g27959 Chara braunii HOM05D001129 ORTHO05D003814 1.0e-19 101.3 192 33.9
RcHm_v2.0_Chr5g0072891 Rosa chinensis HOM05D001129 ORTHO05D003814 2.3e-16 90.1 122 44.3
Pp3c1_4220 Physcomitrium patens HOM05D001129 ORTHO05D003814 4.0e-16 89.4 122 41.0
arahy.Tifrunner.gnm1.ann1.P9HJFB Arachis hypogaea HOM05D001129 ORTHO05D003814 5.2e-16 89.0 82 54.9
TPR.G29243 Trifolium pratense HOM05D001129 ORTHO05D003814 5.7e-15 85.5 188 30.3
RcHm_v2.0_Chr1g0322401 Rosa chinensis HOM05D001129 ORTHO05D003814 9.8e-15 84.7 62 66.1
PRCOL_00003896 Prasinoderma coloniale HOM05D001129 ORTHO05D003814 2.4e-13 80.1 179 29.1
Medtr5g095180 Medicago truncatula HOM05D001129 ORTHO05D003814 1.2e-12 77.8 188 27.7
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.0e-12 77.0 62 61.3
RcHm_v2.0_Chr5g0072791 Rosa chinensis HOM05D001129 ORTHO05D003814 2.0e-12 77.0 104 42.3
C01p43680 Brassica napus HOM05D001129 ORTHO05D018671 2.2e-11 73.6 105 41.0
BolC1t04327H Brassica oleracea HOM05D001129 ORTHO05D018671 2.2e-11 73.6 105 41.0
RcHm_v2.0_Chr1g0333871 Rosa chinensis HOM05D001129 ORTHO05D003814 2.2e-11 73.6 114 42.1
AT5G01440 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 4.2e-10 69.3 105 38.1
RcHm_v2.0_Chr5g0074151 Rosa chinensis HOM05D001129 ORTHO05D003814 1.2e-09 67.8 56 57.1
SEGI_03863 Sequoiadendron giganteum HOM05D001129 ORTHO05D019282 1.8e-08 63.9 59 55.9
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 1.8e-08 63.9 194 27.8
TPR.G24864 Trifolium pratense HOM05D001129 ORTHO05D003814 8.8e-08 61.6 127 33.1
Medtr7g057410 Medicago truncatula HOM05D001129 ORTHO05D012124 1.2e-07 61.2 36 77.8
Pp3c16_8340 Physcomitrium patens HOM05D001129 ORTHO05D003157 1.2e-07 61.2 113 34.5
Cfa023906 Carpinus fangiana HOM05D001129 ORTHO05D003814 2.0e-07 60.5 194 26.3
CARHR167660 Cardamine hirsuta HOM05D001129 ORTHO05D003157 4.4e-07 59.3 97 37.1
Aa31LG10G12310 Aethionema arabicum HOM05D001129 ORTHO05D003157 1.3e-06 57.8 172 27.3
C06p24520 Brassica napus HOM05D001129 ORTHO05D003157 1.3e-06 57.8 116 33.6
BolC6t37600H Brassica oleracea HOM05D001129 ORTHO05D003157 1.3e-06 57.8 116 33.6
SGA_v2.0_scaffold69G23113 Striga asiatica HOM05D001129 ORTHO05D003157 1.3e-06 57.8 116 33.6
PSO339G2454 Papaver somniferum HOM05D001129 ORTHO05D003157 1.7e-06 57.4 116 31.9
AL5G39040 Arabidopsis lyrata HOM05D001129 ORTHO05D003157 2.2e-06 57.0 97 37.1
BraA04t16033Z Brassica rapa HOM05D001129 ORTHO05D003157 2.2e-06 57.0 97 34.0
AL5G39050 Arabidopsis lyrata HOM05D001129 ORTHO05D003157 2.8e-06 56.6 94 36.2
A04p03100 Brassica napus HOM05D001129 ORTHO05D003157 2.8e-06 56.6 97 34.0
Carub.0004s0428 Capsella rubella HOM05D001129 ORTHO05D003157 2.8e-06 56.6 97 35.1
Sp5g05130 Schrenkiella parvula HOM05D001129 ORTHO05D003157 2.8e-06 56.6 100 36.0
PGSC0003DMG402027248 Solanum tuberosum HOM05D001129 ORTHO05D003157 2.8e-06 56.6 118 33.1
Carub.0005s2430 Capsella rubella HOM05D001129 ORTHO05D003157 3.7e-06 56.2 97 36.1
MCO11G812 Micromonas commoda HOM05D001129 ORTHO05D003814 3.7e-06 56.2 146 24.7
Solyc04g015690.4 Solanum lycopersicum HOM05D001129 ORTHO05D003157 3.7e-06 56.2 118 33.1
Sopen04g007770 Solanum pennellii HOM05D001129 ORTHO05D003157 3.7e-06 56.2 118 33.1
AagrBONN_evm.TU.Sc2ySwM_228.1876 Anthoceros agrestis HOM05D001129 ORTHO05D003157 4.9e-06 55.8 111 32.4
CAN.G676.67 Capsicum annuum HOM05D001129 ORTHO05D003157 4.9e-06 55.8 114 34.2
Pp3c5_8950 Physcomitrium patens HOM05D001129 ORTHO05D003157 6.3e-06 55.5 144 29.2
BcaB02g08315 Brassica carinata HOM05D001129 ORTHO05D003157 8.3e-06 55.1 100 33.0
MBI02_g23135_MAGBIO Magnolia biondii HOM05D001129 ORTHO05D003157 8.3e-06 55.1 97 36.1


User provided reference genes

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