Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 6.3e-272 940.3 506 100.0
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 6.3e-272 940.3 506 100.0
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 2.3e-266 921.8 506 92.9
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 2.7e-254 881.7 452 98.2
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 1.3e-253 879.4 452 98.0
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 2.0e-249 865.5 502 88.2
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 3.0e-205 718.8 456 80.7
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 5.3e-202 708.0 457 79.9
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 9.0e-186 654.1 456 71.5
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 7.6e-185 651.0 447 72.9
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 6.5e-184 647.9 447 72.0
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 2.5e-183 646.0 448 71.9
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 9.3e-183 644.0 458 69.7
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 3.5e-182 642.1 465 70.1
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 2.3e-181 639.4 432 72.0
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 2.3e-181 639.4 451 71.6
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 1.5e-180 636.7 420 74.5
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 1.9e-180 636.3 448 71.7
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 6.3e-179 631.3 438 73.3
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 1.4e-178 630.2 434 71.9
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 1.4e-178 630.2 429 72.7
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 9.0e-178 627.5 430 73.3
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 9.0e-178 627.5 449 70.4
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 2.0e-177 626.3 426 72.3
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 2.6e-177 625.9 435 72.2
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 4.5e-177 625.2 439 70.6
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 5.9e-177 624.8 448 70.1
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 5.9e-177 624.8 445 71.0
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 7.7e-177 624.4 448 70.1
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 7.7e-177 624.4 435 71.0
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 1.0e-176 624.0 426 71.8
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 1.0e-176 624.0 435 71.7
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 2.2e-176 622.9 457 68.7
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 2.9e-176 622.5 445 69.7
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 8.5e-176 620.9 427 71.4
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 8.5e-176 620.9 437 70.0
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 7.2e-175 617.8 441 68.9
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 9.4e-175 617.5 440 70.0
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 2.1e-174 616.3 445 69.0
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 6.1e-174 614.8 440 69.5
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 3.9e-173 612.1 450 68.4
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 1.7e-171 606.7 443 68.2
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 6.3e-171 604.7 450 67.3
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 1.2e-169 600.5 444 66.7
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 3.4e-169 599.0 455 65.5
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 4.5e-169 598.6 450 65.1
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 7.7e-169 597.8 454 67.2
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 1.3e-168 597.0 447 67.6
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 2.2e-168 596.3 430 68.4
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 3.8e-168 595.5 429 69.0
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 6.5e-168 594.7 456 65.1
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 1.4e-167 593.6 442 67.4
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 1.4e-167 593.6 451 65.4
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 2.5e-167 592.8 428 68.9
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 2.5e-167 592.8 456 65.6
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 5.5e-167 591.7 451 66.5
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 7.2e-167 591.3 452 65.7
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 9.4e-167 590.9 426 68.1
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 9.4e-167 590.9 443 65.5
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 1.2e-166 590.5 428 68.0
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 1.6e-166 590.1 455 65.5
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 7.9e-166 587.8 454 65.6
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 1.0e-165 587.4 450 65.8
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 2.3e-165 586.3 450 65.6
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 3.9e-165 585.5 437 66.6
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 5.1e-165 585.1 439 66.3
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 5.1e-165 585.1 446 66.4
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 6.7e-165 584.7 431 67.7
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 1.5e-164 583.6 427 67.2
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 5.7e-164 581.6 430 67.2
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 9.7e-164 580.9 428 67.5
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 1.7e-163 580.1 428 66.8
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 1.8e-162 576.6 455 64.2
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 5.0e-160 568.5 444 66.0
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 1.1e-159 567.4 422 66.8
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 1.5e-159 567.0 435 64.1
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 1.2e-158 563.9 407 68.1
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 1.4e-157 560.5 429 65.3
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 1.8e-157 560.1 446 63.7
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 2.6e-156 556.2 452 62.2
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 3.1e-154 549.3 450 63.3
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 2.3e-149 533.1 444 60.4
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 1.2e-148 530.8 448 61.2
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 1.5e-140 503.8 359 70.8
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 1.7e-139 500.4 425 59.3
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 3.1e-138 496.1 423 58.2
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 5.4e-138 495.4 432 59.0
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 2.3e-133 479.9 425 55.5
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 6.8e-133 478.4 451 55.4
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 1.9e-127 460.3 366 62.0
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 1.8e-117 427.2 401 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 5.2e-117 425.6 425 51.8
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 6.8e-117 425.2 420 52.6
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 6.8e-117 425.2 296 73.3
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 5.2e-109 399.1 452 47.8
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 7.6e-100 368.6 435 46.4
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 3.5e-97 359.8 417 46.0
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 1.3e-94 351.3 262 66.4
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 2.8e-86 323.6 306 56.5
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 4.8e-86 322.8 426 43.9
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 1.0e-67 261.9 218 57.3
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 3.2e-66 256.9 191 65.4
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 6.3e-54 216.1 147 66.7
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 6.7e-48 196.1 145 64.8
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 3.2e-34 150.6 116 65.5
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 1.7e-27 128.3 99 63.6
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 2.3e-24 117.9 85 67.1
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 7.3e-10 69.7 212 29.2
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 7.3e-10 69.7 476 20.6
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 1.2e-09 68.9 476 20.0
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 1.6e-09 68.6 225 24.9
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 2.8e-09 67.8 478 20.5
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 3.6e-09 67.4 476 20.4
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 4.7e-09 67.0 217 26.7
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 8.0e-09 66.2 223 26.5
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 1.0e-08 65.9 217 26.7
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 1.0e-08 65.9 476 20.0
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 1.4e-08 65.5 217 26.7
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 1.4e-08 65.5 476 20.2
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 1.4e-08 65.5 217 26.3
Ah.15g094770 Amaranthus hybridus HOM05D002360 ORTHO05D006971 1.8e-08 65.1 469 21.1
AL6G24890 Arabidopsis lyrata HOM05D007163 ORTHO05D009213 2.3e-08 64.7 217 26.3
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 4.0e-08 63.9 217 27.2
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 4.0e-08 63.9 217 25.8
AagrBONN_evm.TU.Sc2ySwM_368.2776 Anthoceros agrestis HOM05D002360 ORTHO05D006971 8.9e-08 62.8 471 20.0
RcHm_v2.0_Chr4g0411571 Rosa chinensis HOM05D002360 ORTHO05D006971 1.2e-07 62.4 478 18.8
FAN07G1347 Fragaria x ananassa HOM05D002360 ORTHO05D006971 1.5e-07 62.0 478 19.5
FAN12G1508 Fragaria x ananassa HOM05D002360 ORTHO05D006971 1.5e-07 62.0 478 19.5
Carub.0006s1242 Capsella rubella HOM05D007163 ORTHO05D009213 4.4e-07 60.5 217 26.3
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 4.4e-07 60.5 50 58.0
Sc03g0006730 Simmondsia chinensis HOM05D007163 ORTHO05D009213 4.4e-07 60.5 182 24.7
Nn3g16518 Nelumbo nucifera HOM05D007163 ORTHO05D009213 7.5e-07 59.7 224 25.4
PSO063G0972 Papaver somniferum HOM05D007163 ORTHO05D009213 7.5e-07 59.7 172 28.5
AUR62001382 Chenopodium quinoa HOM05D002360 ORTHO05D006971 1.3e-06 58.9 477 20.1
Cre06.g281250 Chlamydomonas reinhardtii HOM05D001254 ORTHO05D001386 1.7e-06 58.5 171 25.7
MD17G1132400 Malus domestica HOM05D000461 ORTHO05D001840 2.2e-06 58.2 61 45.9
Sed0015727 Sechium edule HOM05D007163 ORTHO05D009213 2.2e-06 58.2 81 37.0
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 2.9e-06 57.8 175 28.0
Ah.11g045340 Amaranthus hybridus HOM05D007163 ORTHO05D009213 2.9e-06 57.8 177 26.6
FvH4_6g38950 Fragaria vesca HOM05D000461 ORTHO05D001840 2.9e-06 57.8 58 48.3
FAN14G3809 Fragaria x ananassa HOM05D000461 ORTHO05D001840 2.9e-06 57.8 58 48.3
Nn6g31492 Nelumbo nucifera HOM05D002360 ORTHO05D006971 2.9e-06 57.8 185 27.6
THA.LOC104802380 Tarenaya hassleriana HOM05D007163 ORTHO05D009213 2.9e-06 57.8 216 25.0
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 3.7e-06 57.4 177 27.7
Medtr3g084830 Medicago truncatula HOM05D002360 ORTHO05D006971 3.7e-06 57.4 177 26.0
QL06p028316 Quercus lobata HOM05D002360 ORTHO05D006971 3.7e-06 57.4 181 26.0
unitig_699.g19634 Utricularia gibba HOM05D000461 ORTHO05D001840 3.7e-06 57.4 59 47.5
Duzib151G1143 Durio zibethinus HOM05D002360 ORTHO05D006971 4.9e-06 57.0 177 26.0
Gohir.A10G132000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 4.9e-06 57.0 180 26.1
Gohir.D10G135000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 4.9e-06 57.0 180 26.1
Potri.005G207300 Populus trichocarpa HOM05D000461 ORTHO05D001840 4.9e-06 57.0 59 47.5
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 4.9e-06 57.0 179 26.3
MELO3C016193.2 Cucumis melo HOM05D000461 ORTHO05D001840 6.4e-06 56.6 63 46.0
CsaV3_4G007490 Cucumis sativus L. HOM05D000461 ORTHO05D001840 6.4e-06 56.6 63 46.0
FAN05G1039 Fragaria x ananassa HOM05D000461 ORTHO05D001840 6.4e-06 56.6 58 46.6
Lj1A522T61 Lonicera japonica HOM05D000461 ORTHO05D001840 6.4e-06 56.6 59 47.5
Lj1C523T2 Lonicera japonica HOM05D000461 ORTHO05D001840 6.4e-06 56.6 59 47.5
TPR.G38344 Trifolium pratense HOM05D007163 ORTHO05D009213 6.4e-06 56.6 171 27.5
unitig_85.g27321 Utricularia gibba HOM05D000461 ORTHO05D001840 6.4e-06 56.6 59 47.5
Atru.chr3.1763 Acer truncatum HOM05D002360 ORTHO05D006971 8.3e-06 56.2 177 24.9
CSS0047456 Camellia sinensis var. sinensis HOM05D001254 ORTHO05D001386 8.3e-06 56.2 77 35.1
Cpa.g.sc50.126 Carica papaya HOM05D000461 ORTHO05D001840 8.3e-06 56.2 52 53.8
Lsat_1_v5_gn_4_136961 Lactuca sativa HOM05D000461 ORTHO05D001840 8.3e-06 56.2 59 44.1
Medtr5g090300 Medicago truncatula HOM05D000461 ORTHO05D001840 8.3e-06 56.2 57 45.6
QL02p071962 Quercus lobata HOM05D007163 ORTHO05D009213 8.3e-06 56.2 176 26.7
QL04p060254 Quercus lobata HOM05D000461 ORTHO05D001840 8.3e-06 56.2 53 49.1
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 8.3e-06 56.2 177 25.4


User provided reference genes

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