Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 1.1e-82 310.1 176 100.0
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-82 310.1 176 100.0
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.6e-18 95.1 78 62.8
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.6e-18 95.1 77 62.3
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 4.8e-17 92.0 145 41.4
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 6.2e-17 91.7 77 55.8
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.1e-16 90.9 77 58.4
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.4e-16 89.7 119 44.5
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 4.0e-16 89.0 78 59.0
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 4.0e-16 89.0 77 55.8
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 5.3e-16 88.6 86 55.8
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 6.9e-16 88.2 78 55.1
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 9.0e-16 87.8 78 55.1
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-15 87.4 78 56.4
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.2e-15 87.4 85 49.4
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.5e-15 87.0 77 54.5
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.5e-15 87.0 84 53.6
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 2.0e-15 86.7 115 40.9
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.0e-15 86.7 134 36.6
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 2.6e-15 86.3 121 42.1
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 2.6e-15 86.3 121 42.1
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 2.6e-15 86.3 77 51.9
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 2.6e-15 86.3 78 57.7
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 2.6e-15 86.3 77 53.2
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 3.4e-15 85.9 76 53.9
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 3.4e-15 85.9 114 43.0
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.4e-15 85.9 78 55.1
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 3.4e-15 85.9 126 39.7
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.5e-15 85.5 85 50.6
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.5e-15 85.5 85 50.6
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 4.5e-15 85.5 78 55.1
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 4.5e-15 85.5 77 53.2
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 4.5e-15 85.5 125 42.4
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 4.5e-15 85.5 109 43.1
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 4.5e-15 85.5 86 54.7
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 5.8e-15 85.1 84 52.4
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 7.6e-15 84.7 118 44.9
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.6e-15 84.7 78 55.1
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 7.6e-15 84.7 78 55.1
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 7.6e-15 84.7 116 41.4
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 7.6e-15 84.7 77 55.8
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 9.9e-15 84.3 77 55.8
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 9.9e-15 84.3 85 50.6
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 1.3e-14 84.0 85 51.8
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 1.3e-14 84.0 115 48.7
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 1.3e-14 84.0 77 54.5
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.7e-14 83.6 85 49.4
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 1.7e-14 83.6 86 54.7
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.2e-14 83.2 85 49.4
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 2.9e-14 82.8 77 51.9
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 2.9e-14 82.8 77 50.6
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 2.9e-14 82.8 77 51.9
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 6.4e-14 81.6 85 52.9
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 8.4e-14 81.3 77 50.6
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 8.4e-14 81.3 77 54.5
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 8.4e-14 81.3 77 51.9
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.1e-13 80.9 77 49.4
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-13 80.9 75 53.3
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 1.1e-13 80.9 133 42.1
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 1.4e-13 80.5 115 40.0
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.4e-13 80.5 85 50.6
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 1.4e-13 80.5 78 59.0
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 1.9e-13 80.1 78 51.3
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 1.9e-13 80.1 77 49.4
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.9e-13 80.1 69 58.0
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 1.9e-13 80.1 112 40.2
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.4e-13 79.7 69 58.0
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 3.2e-13 79.3 76 55.3
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 3.2e-13 79.3 72 54.2
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 4.2e-13 79.0 117 44.4
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 4.2e-13 79.0 152 34.2
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 4.2e-13 79.0 114 41.2
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 4.2e-13 79.0 63 52.4
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 4.2e-13 79.0 62 56.5
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 4.2e-13 79.0 144 37.5
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 5.4e-13 78.6 149 37.6
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 5.4e-13 78.6 77 54.5
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 5.4e-13 78.6 69 55.1
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.4e-13 78.6 69 55.1
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 5.4e-13 78.6 86 50.0
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.1e-13 78.2 116 44.0
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.1e-13 78.2 78 48.7
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 7.1e-13 78.2 151 35.8
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 7.1e-13 78.2 85 48.2
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 9.3e-13 77.8 152 37.5
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 1.6e-12 77.0 76 50.0
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 1.6e-12 77.0 78 53.8
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.6e-12 77.0 62 56.5
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 1.6e-12 77.0 123 36.6
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 2.1e-12 76.6 89 46.1
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 4.6e-12 75.5 115 43.5
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 4.6e-12 75.5 70 51.4
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 6.0e-12 75.1 77 48.1
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 6.0e-12 75.1 77 50.6
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.0e-12 75.1 77 50.6
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.9e-12 74.7 113 42.5
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 7.9e-12 74.7 125 37.6
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 1.0e-11 74.3 61 60.7
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 1.8e-11 73.6 79 48.1
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 1.8e-11 73.6 78 50.0
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 3.0e-11 72.8 116 39.7
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 3.0e-11 72.8 98 41.8
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 3.0e-11 72.8 77 46.8
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 3.0e-11 72.8 71 47.9
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 3.9e-11 72.4 78 51.3
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 3.9e-11 72.4 78 48.7
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 5.1e-11 72.0 146 35.6
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 5.1e-11 72.0 60 55.0
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 8.7e-11 71.2 79 46.8
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.1e-10 70.9 113 35.4
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-10 70.9 83 45.8
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-10 70.5 145 37.2
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.9e-10 70.1 77 48.1
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 2.5e-10 69.7 145 36.6
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.5e-10 69.7 102 37.3
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 3.3e-10 69.3 63 55.6
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 3.3e-10 69.3 63 55.6
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 3.3e-10 69.3 68 48.5
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 3.3e-10 69.3 75 48.0
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 3.3e-10 69.3 54 66.7
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 3.3e-10 69.3 80 48.8
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 4.3e-10 68.9 60 50.0
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 4.3e-10 68.9 75 48.0
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 7.4e-10 68.2 115 37.4
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 9.6e-10 67.8 141 34.8
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 9.6e-10 67.8 64 56.2
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.6e-10 67.8 79 40.5
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-09 67.4 66 53.0
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.6e-09 67.0 68 47.1
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.6e-09 67.0 113 37.2
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 2.1e-09 66.6 122 35.2
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 2.8e-09 66.2 63 52.4
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 2.8e-09 66.2 103 39.8
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 3.7e-09 65.9 63 52.4
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 3.7e-09 65.9 61 54.1
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 4.8e-09 65.5 63 55.6
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 8.1e-09 64.7 45 62.2
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 8.1e-09 64.7 45 57.8
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-08 64.3 60 53.3
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.4e-08 63.9 128 34.4
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.4e-08 63.9 126 34.9
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 1.4e-08 63.9 63 46.0
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 4.0e-08 62.4 45 60.0
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-07 60.8 45 60.0
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 2.0e-07 60.1 79 39.2
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.6e-07 58.2 59 42.4
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 3.8e-06 55.8 57 47.4
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 4.9e-06 55.5 66 45.5
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.9e-06 55.5 65 46.2


User provided reference genes

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