Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.4e-262 909.1 461 100.0
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 5.4e-262 907.1 461 99.3
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.3e-260 902.5 461 99.3
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.7e-260 902.1 461 98.7
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.5e-259 899.0 461 98.7
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 3.9e-244 847.8 461 92.6
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 6.9e-225 783.9 461 86.6
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 1.9e-219 765.8 462 84.6
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 4.8e-218 761.1 462 84.4
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 2.0e-216 755.7 462 82.3
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.6e-216 755.4 462 82.0
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 1.3e-215 753.1 462 82.3
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 2.9e-215 751.9 462 81.4
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 6.5e-215 750.7 462 81.8
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 1.9e-214 749.2 462 80.7
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 7.1e-214 747.3 462 81.8
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 7.1e-214 747.3 462 81.2
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 1.2e-213 746.5 469 81.9
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 1.6e-213 746.1 462 82.0
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 2.1e-213 745.7 462 81.0
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 2.7e-213 745.3 462 81.4
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 4.6e-213 744.6 462 81.6
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 6.0e-213 744.2 462 81.0
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 1.3e-212 743.0 459 81.5
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 3.9e-212 741.5 463 80.6
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 3.9e-212 741.5 462 80.5
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 5.1e-212 741.1 463 80.6
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 6.7e-212 740.7 462 81.2
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 3.3e-211 738.4 463 80.6
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 3.3e-211 738.4 463 80.6
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 3.3e-211 738.4 467 80.5
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 4.3e-211 738.0 464 80.8
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 4.3e-211 738.0 463 80.6
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 4.3e-211 738.0 457 81.6
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 7.4e-211 737.3 464 81.7
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 7.4e-211 737.3 462 80.1
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 1.3e-210 736.5 467 78.2
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.3e-210 736.5 464 81.0
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.6e-210 736.1 462 80.3
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 2.1e-210 735.7 462 79.2
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 2.1e-210 735.7 462 80.5
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.8e-209 732.6 462 80.3
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 3.1e-209 731.9 464 80.8
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 3.1e-209 731.9 462 79.2
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 4.1e-209 731.5 462 79.7
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 4.1e-209 731.5 462 79.7
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 5.3e-209 731.1 462 79.7
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 5.3e-209 731.1 462 79.7
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 6.9e-209 730.7 462 80.1
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 2.0e-208 729.2 437 83.8
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 2.6e-208 728.8 461 79.2
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 2.6e-208 728.8 461 79.2
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 3.4e-208 728.4 461 79.2
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 3.4e-208 728.4 458 79.9
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 1.0e-207 726.9 461 79.4
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 2.9e-207 725.3 465 79.6
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 3.8e-207 724.9 462 80.1
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 1.1e-206 723.4 461 78.7
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 1.1e-206 723.4 461 78.7
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 1.4e-206 723.0 461 78.7
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 1.4e-206 723.0 461 79.0
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 1.4e-206 723.0 462 79.0
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 2.5e-206 722.2 462 77.9
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 3.2e-206 721.8 461 78.7
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 5.5e-206 721.1 467 77.5
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 7.2e-206 720.7 469 78.7
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 9.3e-206 720.3 510 73.5
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.1e-205 719.2 443 83.3
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 2.1e-205 719.2 462 77.9
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 2.7e-205 718.8 461 78.3
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 3.5e-205 718.4 462 77.5
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 3.5e-205 718.4 462 77.9
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 3.5e-205 718.4 462 77.9
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.0e-204 716.8 463 77.5
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 1.0e-204 716.8 466 77.5
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 3.9e-204 714.9 467 77.1
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 4.3e-203 711.4 464 77.2
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 3.7e-202 708.4 462 77.7
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 8.2e-202 707.2 483 73.9
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 8.2e-202 707.2 456 77.2
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 2.4e-201 705.7 436 82.8
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 2.4e-201 705.7 436 82.8
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 2.4e-201 705.7 418 83.0
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 3.1e-201 705.3 410 84.4
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 6.9e-201 704.1 473 75.3
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 1.2e-200 703.4 464 76.7
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 2.0e-200 702.6 464 78.2
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 3.4e-200 701.8 462 76.4
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 7.7e-200 700.7 466 76.0
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 1.7e-199 699.5 410 83.9
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 9.4e-198 693.7 412 82.5
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 2.1e-197 692.6 500 71.8
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 1.0e-196 690.3 436 78.7
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 2.0e-195 686.0 434 79.5
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 3.3e-195 685.3 417 80.8
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 1.1e-193 680.2 472 73.1
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 2.2e-191 672.5 391 83.9
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 2.7e-189 665.6 470 71.9
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 7.9e-189 664.1 384 84.9
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 3.9e-188 661.8 461 76.8
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 6.7e-188 661.0 481 70.5
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 5.7e-187 657.9 384 83.9
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 3.5e-184 648.7 461 72.5
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.5e-184 648.7 462 72.5
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 1.3e-183 646.7 402 82.3
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 2.9e-183 645.6 550 64.4
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 2.5e-182 642.5 417 76.3
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 3.6e-181 638.6 462 71.9
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 1.2e-176 623.6 402 76.4
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 2.7e-176 622.5 463 71.7
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 5.9e-176 621.3 414 75.8
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 8.5e-175 617.5 434 73.3
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 4.2e-174 615.1 412 74.3
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 6.1e-173 611.3 432 70.8
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 1.8e-172 609.8 410 74.1
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 3.7e-170 602.1 423 70.4
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.9e-166 589.7 427 67.9
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 2.3e-164 582.8 490 64.7
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 2.5e-158 562.8 374 75.9
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.4e-148 530.4 593 53.1
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 1.9e-145 520.0 336 79.5
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.3e-143 513.8 426 58.5
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.3e-138 497.3 330 77.0
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 1.7e-127 460.3 412 57.0
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 1.5e-123 447.2 369 61.5
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 6.9e-116 421.8 402 56.7
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 4.6e-112 409.1 462 48.5
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 7.9e-112 408.3 261 75.9
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 9.9e-107 391.3 457 49.5
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.7e-104 383.3 255 76.1
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 7.9e-80 302.0 173 86.1
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.0e-78 297.4 189 79.4
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 6.9e-76 288.9 313 53.7
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 1.5e-75 287.7 389 42.7
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 5.2e-63 246.1 358 41.6
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.2e-56 224.9 134 78.4
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.4e-47 194.9 386 36.0
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.7e-42 177.9 117 76.9
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 1.3e-29 135.2 83 77.1
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 3.2e-28 130.6 72 84.7
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 2.0e-27 127.9 81 82.7
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 2.0e-27 127.9 69 87.0
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 4.4e-22 110.2 125 52.8
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 2.2e-21 107.8 76 71.1
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 4.1e-20 103.6 67 82.1
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.0e-15 87.0 296 27.0
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 2.6e-14 84.3 59 74.6
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 3.2e-12 77.4 61 65.6
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 1.6e-11 75.1 50 76.0
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 3.6e-08 63.9 46 65.2
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 3.6e-08 63.9 46 65.2
CDE05G3312 Ceratophyllum demersum HOM05D004870 ORTHO05D130477 2.0e-06 58.2 80 48.8


User provided reference genes

Program Settings