Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 0.0e+00 1245.0 639 100.0
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 0.0e+00 1198.3 634 97.8
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 0.0e+00 1192.6 633 97.5
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 0.0e+00 1109.7 662 86.9
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 4.8e-277 957.6 665 74.9
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.2e-267 926.4 517 94.0
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 3.1e-260 901.7 653 72.0
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 5.4e-260 901.0 658 71.3
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 7.7e-259 897.1 665 71.3
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 4.2e-257 891.3 659 70.4
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.6e-256 889.4 658 70.8
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 2.7e-256 888.6 665 70.7
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 2.7e-256 888.6 664 70.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 6.8e-255 884.0 663 70.1
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 1.3e-253 879.8 658 70.2
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 3.7e-253 878.2 660 70.0
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 2.4e-252 875.5 664 69.3
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 9.2e-252 873.6 661 69.7
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.2e-251 873.2 660 69.4
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 4.5e-251 871.3 646 70.6
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.9e-251 870.9 666 68.6
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.3e-250 869.8 658 70.4
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 3.8e-250 868.2 659 68.3
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 1.9e-249 865.9 667 68.8
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 3.3e-249 865.1 667 67.0
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 2.3e-247 859.0 667 66.7
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 3.0e-247 858.6 667 66.9
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 2.0e-246 855.9 593 75.4
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 2.6e-246 855.5 661 67.5
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 5.7e-246 854.4 694 65.0
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 5.7e-246 854.4 658 68.4
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 7.5e-246 854.0 663 67.4
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.3e-245 853.2 671 68.0
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 8.3e-245 850.5 668 65.7
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.4e-244 849.7 656 67.5
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 2.4e-244 849.0 658 66.7
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 4.1e-244 848.2 665 65.9
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 4.1e-244 848.2 666 65.5
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 7.0e-244 847.4 666 65.3
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 7.0e-244 847.4 653 67.5
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.6e-243 846.3 666 65.5
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 7.3e-241 837.4 656 66.9
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 4.7e-240 834.7 658 66.1
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 6.2e-240 834.3 658 65.5
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.8e-239 832.8 666 65.5
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 2.3e-239 832.4 656 66.2
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 3.1e-239 832.0 658 66.3
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 8.9e-239 830.5 662 67.4
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 2.0e-238 829.3 654 65.6
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 3.4e-238 828.6 666 64.9
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.3e-237 826.6 661 66.3
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.9e-237 825.5 661 66.1
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 3.7e-237 825.1 658 65.5
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 6.4e-237 824.3 656 64.9
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.4e-236 823.2 658 66.7
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.4e-236 822.4 668 64.8
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 3.2e-236 822.0 656 64.6
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 2.0e-235 819.3 658 65.2
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.0e-235 819.3 660 65.9
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.1e-233 813.5 658 64.6
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.6e-233 811.2 644 65.4
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 8.1e-232 807.4 666 64.1
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.1e-231 807.0 659 64.5
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 3.1e-231 805.4 601 69.1
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 8.9e-231 803.9 692 63.9
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.2e-230 803.5 699 63.2
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 2.6e-230 802.4 654 64.2
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 3.4e-230 802.0 697 62.7
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 6.4e-229 797.7 659 63.7
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 8.3e-229 797.3 659 64.9
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 4.1e-228 795.0 648 67.6
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 2.3e-226 789.3 614 68.1
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 3.9e-226 788.5 666 63.2
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 2.8e-224 782.3 592 68.6
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 4.7e-224 781.6 605 66.6
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 2.3e-223 779.2 656 63.4
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 8.9e-223 777.3 672 61.3
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 7.1e-220 767.7 644 63.8
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.1e-219 766.1 728 59.9
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 6.6e-218 761.1 660 61.7
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 4.7e-216 755.0 636 64.0
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 2.4e-215 752.7 669 59.2
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.5e-214 750.0 644 61.8
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 3.1e-207 725.7 596 64.8
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.3e-205 720.3 862 49.3
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.6e-200 703.4 687 56.8
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 5.3e-191 671.8 656 56.6
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.1e-188 664.1 662 55.7
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 5.1e-186 655.2 683 54.8
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 5.1e-186 655.2 849 47.8
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.6e-184 650.2 663 53.5
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.2e-174 617.5 665 52.2
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.3e-168 597.4 575 57.2
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 9.1e-159 564.7 485 61.6
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.0e-157 561.2 465 65.2
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.2e-157 560.1 580 53.4
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 2.4e-151 540.0 476 60.1
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.2e-140 503.1 605 49.4
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.9e-128 463.4 436 57.1
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 7.3e-108 395.6 433 50.6
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 4.4e-97 359.8 465 44.9
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.4e-90 338.2 345 53.3
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.0e-78 296.2 206 76.2
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 2.1e-75 287.7 202 74.8
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.3e-68 263.8 182 73.6
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 2.4e-66 257.7 237 55.7
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 4.1e-66 256.9 445 37.1
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.6e-62 243.8 319 42.6
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-60 238.0 169 70.4
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 6.9e-58 229.6 290 47.6
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.5e-47 194.5 392 36.2
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.0e-45 189.1 142 68.3
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-42 176.4 427 32.6
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.6e-41 174.5 167 59.3
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.3e-35 155.6 106 72.6
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.8e-34 151.8 249 40.6
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 5.3e-34 150.2 93 78.5
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.0e-33 148.3 145 51.7
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.6e-30 138.7 121 58.7
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 3.6e-30 137.5 79 84.8
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 4.7e-30 137.1 90 75.6
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.8e-29 135.2 124 58.1
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 3.4e-28 131.0 94 69.1
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 5.7e-28 130.2 190 41.6
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 8.3e-27 126.3 88 69.3
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 2.7e-25 121.3 83 74.7
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 5.9e-25 120.2 102 60.8
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 7.7e-25 119.8 165 41.2
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 2.3e-21 108.2 153 48.4
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 9.8e-20 102.8 90 63.3
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.7e-19 100.9 176 36.9
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 8.3e-19 99.8 68 76.5
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.1e-18 99.4 65 73.8
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 3.0e-13 81.3 57 68.4
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 4.0e-13 80.9 50 76.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 4.0e-13 80.9 50 76.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-12 78.6 51 68.6
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.3e-11 75.9 50 70.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 3.7e-11 74.3 92 50.0
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 2.7e-09 68.2 61 62.3
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 5.0e-08 63.9 62 46.8
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 8.6e-08 63.2 64 48.4
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 4.3e-07 60.8 75 53.3
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.2e-06 59.3 49 61.2


User provided reference genes

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