Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2291 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.2e-296 1022.3 491 100.0
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 1.6e-251 872.5 496 87.5
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.2e-238 829.7 496 83.7
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.5e-238 829.3 496 83.9
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 3.7e-237 824.7 496 83.1
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 2.4e-228 795.4 496 79.6
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 7.1e-228 793.9 496 79.6
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 6.0e-227 790.8 496 79.4
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 3.0e-226 788.5 499 77.0
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 2.8e-224 781.9 500 77.6
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 1.1e-223 780.0 496 77.2
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 1.8e-223 779.2 496 75.8
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 2.6e-222 775.4 496 76.4
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 5.8e-222 774.2 496 76.2
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 2.9e-221 771.9 496 76.6
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 4.9e-221 771.2 496 75.0
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 8.4e-221 770.4 496 76.4
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 8.4e-221 770.4 498 76.5
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 1.4e-220 769.6 490 75.7
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 4.2e-220 768.1 496 76.2
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 9.3e-220 766.9 496 75.4
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 2.7e-219 765.4 500 74.4
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 3.5e-219 765.0 496 75.8
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 7.8e-219 763.8 496 74.2
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 7.8e-219 763.8 496 74.2
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 1.3e-218 763.1 496 75.4
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 2.3e-218 762.3 496 75.4
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 2.3e-218 762.3 490 75.3
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 5.1e-218 761.1 500 72.6
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 1.5e-217 759.6 496 74.4
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 5.6e-217 757.7 496 75.0
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 2.1e-216 755.7 496 75.0
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 2.1e-216 755.7 496 75.2
Lj2A763G36 Lonicera japonica HOM05D002496 ORTHO05D002787 3.6e-216 755.0 496 75.2
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 3.6e-216 755.0 497 73.4
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 3.6e-216 755.0 496 73.6
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 4.8e-216 754.6 500 73.8
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 8.1e-216 753.8 496 74.6
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 1.1e-215 753.4 496 75.0
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 2.4e-215 752.3 512 73.0
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 3.1e-215 751.9 496 75.2
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 3.1e-215 751.9 546 69.2
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 4.0e-215 751.5 496 74.8
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 2.6e-214 748.8 501 73.3
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 5.8e-214 747.7 496 71.8
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 7.6e-214 747.3 496 74.4
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 1.3e-213 746.5 496 71.6
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 1.7e-213 746.1 496 74.2
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 1.7e-213 746.1 497 73.6
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 3.8e-213 745.0 496 73.0
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 6.4e-213 744.2 496 74.2
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 8.4e-213 743.8 500 72.4
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 8.4e-213 743.8 496 74.0
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 1.4e-212 743.0 500 72.0
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 1.9e-212 742.7 496 73.6
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.9e-212 742.7 496 74.0
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 3.2e-212 741.9 496 72.8
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 1.6e-211 739.6 496 72.8
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 1.6e-211 739.6 496 73.8
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 2.1e-211 739.2 496 73.6
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 3.5e-211 738.4 500 72.0
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 4.6e-211 738.0 500 71.2
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 1.0e-210 736.9 496 74.0
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 1.3e-210 736.5 500 71.2
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 1.3e-210 736.5 497 72.8
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 1.8e-210 736.1 496 73.0
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 5.1e-210 734.6 500 70.8
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 5.1e-210 734.6 495 73.5
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 1.1e-209 733.4 496 73.4
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 2.5e-209 732.3 496 72.2
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 2.5e-209 732.3 496 72.4
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 3.3e-209 731.9 500 71.0
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 4.3e-209 731.5 496 70.2
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 5.6e-209 731.1 500 71.4
Psat7g063600 Pisum sativum HOM05D002496 ORTHO05D002787 7.4e-209 730.7 500 70.8
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 1.3e-208 729.9 500 71.0
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 2.1e-208 729.2 500 71.2
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 2.1e-208 729.2 496 70.6
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 4.8e-208 728.0 496 70.6
VMungo0251G1507 Vigna mungo HOM05D002496 ORTHO05D002787 4.8e-208 728.0 500 70.6
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 6.2e-208 727.6 500 71.0
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 1.4e-207 726.5 500 70.4
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-207 725.7 489 72.0
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 4.0e-207 724.9 500 70.4
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 2.6e-206 722.2 496 71.6
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 3.4e-206 721.8 500 70.8
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 3.4e-206 721.8 500 70.8
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 5.8e-206 721.1 496 70.8
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 7.6e-206 720.7 500 70.6
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 7.6e-206 720.7 500 70.6
BcaC08g43618 Brassica carinata HOM05D002496 ORTHO05D002787 3.8e-205 718.4 500 70.4
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 3.8e-205 718.4 496 72.6
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 3.2e-204 715.3 500 69.8
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 7.1e-204 714.1 496 71.4
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 1.1e-201 706.8 498 71.1
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 1.9e-201 706.1 496 70.0
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 4.3e-201 704.9 496 69.2
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 5.3e-199 698.0 469 73.8
AUR62040903 Chenopodium quinoa HOM05D002496 ORTHO05D002787 5.3e-199 698.0 496 69.0
CAN.G2119.1 Capsicum annuum HOM05D002496 ORTHO05D002787 9.0e-199 697.2 505 68.9
FvH4_3g45640 Fragaria vesca HOM05D002496 ORTHO05D002787 9.0e-199 697.2 475 76.6
SEGI_26512 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 1.7e-197 693.0 500 68.2
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 5.5e-196 688.0 496 68.3
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 1.6e-195 686.4 497 68.8
Hma1.2p1_0241F.1_g100580 Hydrangea macrophylla HOM05D002496 ORTHO05D002787 2.3e-194 682.6 432 78.0
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 2.4e-191 672.5 497 67.6
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 2.9e-189 665.6 529 63.3
CAN.G1783.6 Capsicum annuum HOM05D002496 ORTHO05D002787 3.3e-185 652.1 473 68.9
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 4.8e-176 621.7 496 62.3
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 4.8e-176 621.7 496 62.3
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 6.5e-173 611.3 503 60.4
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 2.3e-170 602.8 499 60.1
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 3.3e-169 599.0 523 57.9
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 1.6e-163 580.1 507 58.2
Ca_17843_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 9.7e-161 570.9 388 71.4
FvH4_3g45710 Fragaria vesca HOM05D002496 ORTHO05D002787 4.2e-148 528.9 447 64.4
PGSC0003DMG400004280 Solanum tuberosum HOM05D002496 ORTHO05D002787 3.0e-133 479.6 321 73.5
FAN04G0011 Fragaria x ananassa HOM05D002496 ORTHO05D002787 5.8e-129 465.3 267 86.5
Dinv11477 Davidia involucrata HOM05D002496 ORTHO05D002787 4.6e-110 402.5 249 76.7
FAN11G3798 Fragaria x ananassa HOM05D002496 ORTHO05D002787 3.9e-109 399.4 201 95.5
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 9.0e-106 388.3 204 89.2
CDE02G1358 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.4e-103 380.9 204 88.2
CAN.G2026.4 Capsicum annuum HOM05D002496 ORTHO05D002787 7.9e-102 375.2 245 72.7
CBR_g23680 Chara braunii HOM05D002496 ORTHO05D002787 8.4e-96 355.1 302 57.3
CAN.G1669.10 Capsicum annuum HOM05D002496 ORTHO05D002787 4.5e-89 332.8 205 78.5
CAN.G1751.13 Capsicum annuum HOM05D002496 ORTHO05D002787 3.3e-84 316.6 204 75.5
FvH4_3g45670 Fragaria vesca HOM05D002496 ORTHO05D002787 8.2e-83 312.0 171 90.6
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 4.6e-78 296.2 219 63.5
CiPaw.14G136900 Carya illinoinensis HOM05D002496 ORTHO05D002787 1.2e-62 245.0 128 89.8
FAN25G1480 Fragaria x ananassa HOM05D002496 ORTHO05D002787 3.3e-60 236.9 128 90.6
Manes.15G109101 Manihot esculenta HOM05D002496 ORTHO05D000252 1.3e-48 198.4 121 83.5
FAN04G0904 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.6e-46 191.4 101 93.1
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 4.0e-45 186.8 147 66.0
CAN.G1669.5 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-34 152.1 163 52.8
CBR_g37133 Chara braunii HOM05D002496 ORTHO05D002787 1.6e-33 148.3 204 39.2
CAN.G337.40 Capsicum annuum HOM05D002496 ORTHO05D002787 3.8e-32 143.7 195 43.1
Cre02.g112250 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 8.6e-32 142.5 338 29.9
CBR_g39746 Chara braunii HOM05D002496 ORTHO05D002787 2.5e-31 141.0 329 31.9
HPP92_024698 Vanilla planifolia HOM05D002496 ORTHO05D002787 5.6e-31 139.8 88 71.6
CBR_g23253 Chara braunii HOM05D002496 ORTHO05D002787 7.3e-31 139.4 252 37.3
Cre10.g448850 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 4.7e-30 136.7 336 31.0
FAN11G3266 Fragaria x ananassa HOM05D002496 ORTHO05D002787 5.2e-29 133.3 78 87.2
CBR_g38074 Chara braunii HOM05D007859 ORTHO05D002787 3.7e-27 127.1 175 41.7
Cre02.g112300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 1.1e-26 125.6 254 34.6
MCO07G349 Micromonas commoda HOM05D002496 ORTHO05D002787 6.6e-24 116.3 252 31.3
MCO05G112 Micromonas commoda HOM05D002496 ORTHO05D002787 8.6e-24 115.9 338 27.2
HPP92_024697 Vanilla planifolia HOM05D002496 ORTHO05D002787 1.6e-22 111.7 249 35.7
CBR_g38075 Chara braunii HOM05D000019 ORTHO05D002787 5.4e-18 96.7 157 38.9
PRCOL_00006516 Prasinoderma coloniale HOM05D002496 ORTHO05D002787 6.0e-17 93.2 169 32.5
MCO11G888 Micromonas commoda HOM05D002496 ORTHO05D002787 1.1e-15 89.0 257 28.4
Cre17.g728300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 2.0e-12 78.2 271 27.7
MCO16G075 Micromonas commoda HOM05D002496 ORTHO05D002787 5.8e-12 76.6 129 35.7
MCO09G147 Micromonas commoda HOM05D002496 ORTHO05D002787 9.8e-12 75.9 252 26.2
Haze_13303 Corylus avellana HOM05D000007 ORTHO05D000039 1.1e-10 72.4 44 81.8
Cre05.g241202 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 5.4e-10 70.1 277 26.4


User provided reference genes

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