Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 3.2e-278 961.1 467 100.0
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 6.0e-277 956.8 467 99.4
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.0e-257 891.0 480 91.9
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 1.4e-244 849.4 469 88.9
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 2.6e-235 818.5 493 84.2
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 4.5e-208 728.0 472 75.6
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 2.8e-205 718.8 472 74.6
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.3e-202 709.9 447 81.0
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 2.3e-191 672.5 473 68.7
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 1.1e-190 670.2 472 68.6
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 1.1e-185 653.7 474 66.2
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 2.1e-181 639.4 473 64.1
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.4e-180 636.7 474 65.2
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 8.6e-175 617.5 475 64.0
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 5.6e-174 614.8 475 63.8
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 2.1e-173 612.8 475 63.8
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 4.7e-173 611.7 470 64.9
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.8e-172 609.8 472 63.3
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 2.4e-172 609.4 467 63.8
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 2.0e-171 606.3 473 64.3
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 2.1e-168 596.3 484 62.0
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 1.7e-167 593.2 478 62.3
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 8.7e-167 590.9 473 61.5
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 1.5e-166 590.1 474 60.5
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 5.6e-166 588.2 468 63.2
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 2.1e-165 586.3 472 60.8
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 1.4e-164 583.6 498 60.4
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 3.1e-164 582.4 460 63.7
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 2.9e-162 575.9 471 60.1
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 3.8e-162 575.5 472 61.7
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 1.0e-159 567.4 472 60.6
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 1.1e-158 563.9 475 58.5
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.1e-156 557.4 478 58.2
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 1.4e-156 557.0 470 61.1
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 2.4e-156 556.2 475 57.9
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 6.9e-156 554.7 473 55.8
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 3.4e-155 552.4 487 56.7
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 4.5e-155 552.0 475 58.1
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 4.5e-155 552.0 518 53.5
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 1.3e-154 550.4 470 58.7
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 1.9e-153 546.6 474 57.0
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 1.9e-150 536.6 464 56.0
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 2.8e-149 532.7 456 57.9
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 4.8e-149 531.9 469 56.7
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 5.8e-147 525.0 470 55.3
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 1.4e-145 520.4 472 54.9
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 3.2e-145 519.2 568 50.7
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 6.0e-144 515.0 526 51.9
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 1.6e-141 506.9 474 54.6
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.4e-140 503.8 469 53.3
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 2.4e-140 503.1 470 54.7
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 3.1e-140 502.7 377 65.5
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 9.0e-140 501.1 469 53.3
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 5.8e-139 498.4 477 54.7
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 1.3e-138 497.3 388 62.1
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 2.2e-138 496.5 468 52.1
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 5.0e-138 495.4 476 52.1
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 6.5e-138 495.0 469 52.2
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 4.2e-137 492.3 469 52.0
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 7.1e-137 491.5 471 51.6
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 9.3e-137 491.1 476 52.9
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 1.2e-136 490.7 465 55.5
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 1.6e-136 490.3 386 63.0
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 1.0e-135 487.6 472 51.5
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 3.9e-135 485.7 477 52.4
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 1.4e-132 477.2 466 51.5
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 3.1e-132 476.1 389 63.0
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 1.2e-131 474.2 509 48.1
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.2e-131 474.2 518 50.0
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 1.3e-130 470.7 517 47.4
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 3.8e-130 469.2 509 48.1
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 1.6e-128 463.8 486 51.2
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 2.7e-128 463.0 464 51.5
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 2.7e-128 463.0 439 55.8
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 2.7e-128 463.0 457 54.7
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 6.1e-128 461.8 478 52.1
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 8.2e-125 451.4 482 50.8
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 5.3e-124 448.7 460 50.2
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 1.5e-123 447.2 474 49.6
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 6.5e-122 441.8 469 50.7
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 1.0e-119 434.5 500 49.0
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 6.3e-117 425.2 509 45.6
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 7.7e-115 418.3 465 49.2
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 1.5e-113 414.1 475 47.2
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 4.2e-113 412.5 474 46.0
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 1.7e-106 390.6 322 58.1
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 2.5e-105 386.7 327 56.6
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 9.4e-105 384.8 473 43.3
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 7.2e-97 358.6 308 58.1
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 7.0e-92 342.0 276 60.5
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 1.7e-90 337.4 256 66.0
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 1.2e-88 331.3 284 57.4
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 8.0e-88 328.6 287 56.8
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 5.7e-86 322.4 326 51.5
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.7e-85 320.9 276 56.9
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 1.7e-82 310.8 484 35.5
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 6.6e-82 308.9 294 57.5
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 1.0e-74 285.0 507 35.1
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 2.3e-66 257.3 206 59.7
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.1e-60 238.4 191 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 2.7e-59 233.8 454 33.0
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.7e-59 233.8 188 61.7
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 1.9e-57 227.6 184 60.3
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 3.3e-57 226.9 160 66.2
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 2.8e-56 223.8 168 64.9
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 5.2e-55 219.5 227 48.9
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 5.6e-49 199.5 161 58.4
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-37 161.4 355 32.4
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 4.6e-35 153.3 133 57.9
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 4.3e-33 146.7 190 42.6
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 3.1e-23 114.0 132 46.2
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.1e-20 105.5 85 60.0
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 1.1e-20 105.5 91 57.1
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 1.8e-18 98.2 357 26.3
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 4.3e-17 93.6 287 28.2
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 2.8e-16 90.9 91 50.5
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 9.0e-15 85.9 53 69.8
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 7.7e-14 82.8 147 34.7
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 2.3e-10 71.2 100 41.0
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 3.7e-08 63.9 53 54.7
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 6.9e-07 59.7 53 52.8
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 2.0e-06 58.2 55 45.5
Prupe.6G030900 Prunus persica HOM05D000913 ORTHO05D000687 2.6e-06 57.8 30 83.3


User provided reference genes

Program Settings