Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 8.1e-156 553.9 323 100.0
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 4.0e-147 525.0 336 93.2
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 7.4e-133 477.6 337 85.8
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.8e-113 412.1 338 74.9
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 6.5e-113 411.4 340 73.5
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.1e-111 406.4 340 72.9
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 4.7e-111 405.2 338 74.0
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 7.9e-111 404.4 323 78.9
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.5e-109 400.2 323 78.0
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 7.4e-109 397.9 348 71.0
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.8e-107 393.3 258 87.2
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 2.6e-106 389.4 352 69.9
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 4.5e-106 388.7 340 75.3
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 1.7e-105 386.7 338 71.6
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.9e-105 386.0 347 70.0
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 5.0e-105 385.2 349 71.1
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 8.5e-105 384.4 327 73.4
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 2.7e-103 379.4 346 72.0
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 3.6e-103 379.0 339 69.3
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 3.6e-103 379.0 343 70.6
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 3.6e-103 379.0 338 71.3
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 4.4e-101 372.1 339 69.9
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 7.5e-101 371.3 376 68.1
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.7e-100 370.2 336 70.8
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 2.8e-100 369.4 295 75.6
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 1.4e-99 367.1 347 67.7
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.8e-99 366.7 362 65.7
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.8e-99 366.7 204 98.0
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.2e-98 364.0 337 71.2
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 7.7e-98 361.3 340 67.9
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.0e-97 360.9 340 66.8
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 2.9e-97 359.4 333 69.1
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 8.5e-97 357.8 344 67.4
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.6e-95 353.6 349 65.6
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.7e-95 352.8 348 65.5
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 4.7e-95 352.1 339 66.4
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 6.1e-95 351.7 313 71.2
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 4.0e-94 349.0 339 67.8
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.5e-93 347.1 298 73.5
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 3.4e-93 345.9 332 67.5
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 3.4e-93 345.9 325 67.7
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 4.4e-93 345.5 342 67.3
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 4.4e-93 345.5 340 68.8
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 1.7e-92 343.6 343 66.5
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 6.3e-92 341.7 330 68.2
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.1e-91 340.9 333 66.7
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.1e-91 340.9 287 72.8
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 2.4e-91 339.7 327 67.3
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.6e-90 337.0 289 71.6
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.3e-89 334.0 343 64.7
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 5.5e-88 328.6 336 64.3
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 5.5e-88 328.6 340 66.2
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 2.1e-87 326.6 332 66.0
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 3.4e-85 319.3 317 66.2
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.7e-84 317.0 327 63.6
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.8e-84 316.2 272 70.6
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 6.3e-84 315.1 336 65.2
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 3.1e-83 312.8 346 61.3
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 5.4e-83 312.0 286 68.2
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 7.0e-83 311.6 294 67.3
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.6e-82 310.5 325 63.4
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 3.5e-82 309.3 307 65.1
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.0e-81 307.8 373 57.9
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.3e-81 306.6 305 63.3
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 3.8e-81 305.8 310 66.1
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 5.0e-81 305.4 373 57.6
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 3.3e-80 302.8 342 62.3
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 9.5e-80 301.2 305 62.6
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.6e-79 300.4 341 58.1
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.6e-79 299.3 241 75.1
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.0e-78 297.7 352 61.1
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 2.3e-78 296.6 375 55.2
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 6.8e-78 295.0 309 62.8
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.0e-77 293.5 285 64.6
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 9.8e-77 291.2 303 62.0
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 2.2e-76 290.0 351 57.8
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 3.7e-76 289.3 342 59.9
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 6.4e-76 288.5 342 61.1
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 6.4e-76 288.5 344 57.6
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 8.3e-76 288.1 311 61.7
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.4e-75 287.3 303 62.0
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 5.4e-75 285.4 327 58.7
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 2.7e-74 283.1 357 59.9
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 4.6e-74 282.3 258 67.1
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.9e-73 279.3 325 59.1
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 5.0e-73 278.9 290 62.1
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 2.5e-72 276.6 330 59.4
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 3.3e-72 276.2 342 56.1
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 2.6e-69 266.5 365 54.5
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.9e-67 260.4 342 57.9
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.9e-67 260.4 342 57.9
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 4.3e-64 249.2 289 57.8
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 2.8e-63 246.5 364 53.3
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.8e-63 246.5 340 53.2
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 4.7e-63 245.7 340 53.2
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 6.2e-63 245.4 372 51.6
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 8.1e-63 245.0 340 52.6
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.1e-62 244.6 297 58.6
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 5.2e-62 242.3 363 51.5
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 5.2e-62 242.3 212 68.9
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 9.9e-61 238.0 327 53.5
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.7e-60 237.3 325 52.9
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 2.9e-60 236.5 285 58.2
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 5.4e-59 232.3 198 68.7
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.5e-58 229.6 313 54.0
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.3e-57 227.6 351 50.7
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 3.9e-57 226.1 349 48.1
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 3.3e-56 223.0 204 65.2
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 3.3e-56 223.0 204 65.2
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 7.3e-56 221.9 337 49.0
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 1.6e-55 220.7 255 57.3
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 8.1e-55 218.4 234 57.7
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 2.0e-53 213.8 316 51.3
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 2.6e-53 213.4 471 39.1
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 3.8e-52 209.5 191 70.7
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.9e-51 207.2 189 65.6
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 2.1e-50 203.8 265 54.3
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 1.9e-48 197.2 199 60.8
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 4.7e-47 192.6 244 52.5
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 5.8e-45 185.7 337 43.0
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.1e-43 181.4 204 61.8
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.9e-43 180.6 330 44.8
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 5.4e-43 179.1 343 42.6
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 9.3e-43 178.3 235 50.6
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.6e-42 177.6 338 43.5
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.6e-42 177.6 234 50.4
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.3e-41 174.5 334 46.7
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.5e-40 170.2 161 64.6
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 7.3e-40 168.7 275 48.0
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 2.1e-39 167.2 293 44.7
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 8.1e-39 165.2 329 45.6
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.2e-34 151.4 338 45.9
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 7.4e-32 142.1 145 65.5
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 1.1e-30 138.3 208 51.4
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.4e-21 106.7 119 70.6
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.2e-18 98.2 142 46.5
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 3.9e-17 93.2 151 39.1
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 2.5e-16 90.5 96 63.5
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 3.4e-13 80.1 98 60.2
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 1.9e-08 64.3 58 69.0
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 9.7e-08 62.0 58 62.1
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.3e-07 61.6 94 54.3
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.8e-07 59.7 94 53.2
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 1.4e-06 58.2 86 48.8
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.8e-06 57.8 94 53.2


User provided reference genes

Program Settings