Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.4e-92 341.7 176 100.0
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.4e-92 341.7 176 100.0
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.7e-81 304.7 163 97.5
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 2.3e-80 302.4 163 96.9
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.0e-80 301.6 163 96.3
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 1.0e-67 260.4 167 85.0
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 2.0e-60 236.1 167 80.2
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 2.1e-57 226.1 167 77.8
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 2.8e-57 225.7 167 79.0
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 2.6e-55 219.2 169 71.6
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 5.7e-55 218.0 170 74.7
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 5.7e-55 218.0 161 75.2
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.3e-54 216.9 161 75.2
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 2.9e-54 215.7 161 74.5
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 2.9e-54 215.7 169 70.4
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 3.7e-54 215.3 167 73.7
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 8.3e-54 214.2 173 71.7
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 2.4e-53 212.6 169 69.8
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 2.4e-53 212.6 173 68.2
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 4.1e-53 211.8 167 73.1
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 9.2e-53 210.7 169 71.6
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 1.2e-52 210.3 173 70.5
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 2.0e-52 209.5 173 70.5
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 2.7e-52 209.1 167 69.5
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 2.7e-52 209.1 167 68.3
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 7.8e-52 207.6 167 70.1
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 7.8e-52 207.6 161 70.8
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 1.3e-51 206.8 173 69.9
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 1.7e-51 206.5 167 70.7
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 8.6e-51 204.1 166 68.1
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 1.1e-50 203.8 166 71.1
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 1.1e-50 203.8 167 67.1
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.5e-50 203.4 171 69.6
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 5.6e-50 201.4 175 68.0
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.2e-49 200.3 176 66.5
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 1.6e-49 199.9 175 66.9
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 2.1e-49 199.5 164 68.9
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 3.6e-49 198.7 164 68.9
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 1.1e-48 197.2 165 66.1
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 2.3e-48 196.1 168 66.1
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.1e-48 195.7 156 71.2
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 4.0e-48 195.3 166 64.5
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.2e-48 194.9 171 67.3
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 5.2e-48 194.9 171 67.3
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 8.9e-48 194.1 171 67.3
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 4.4e-47 191.8 171 68.4
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 6.4e-46 188.0 169 66.3
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.4e-45 186.8 167 66.5
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 2.4e-45 186.0 173 65.3
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 1.2e-44 183.7 167 65.3
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 3.5e-44 182.2 173 64.7
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.6e-44 181.8 174 63.8
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 6.0e-44 181.4 171 66.1
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 6.0e-44 181.4 173 65.9
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 7.8e-44 181.0 175 64.0
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 2.3e-43 179.5 172 61.6
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 1.9e-42 176.4 173 63.0
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.6e-41 173.3 171 62.6
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 2.1e-41 172.9 163 62.6
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 2.8e-41 172.6 171 60.8
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 6.2e-41 171.4 170 60.6
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 8.1e-41 171.0 171 60.8
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.1e-40 170.6 174 58.6
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 1.8e-40 169.9 136 75.0
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 4.0e-40 168.7 119 75.6
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 5.2e-40 168.3 175 60.6
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 9.9e-39 164.1 119 73.9
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 2.2e-38 162.9 133 69.9
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 4.9e-38 161.8 170 58.2
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 6.4e-38 161.4 119 73.1
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 6.4e-38 161.4 124 73.4
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 6.4e-38 161.4 124 73.4
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 8.3e-38 161.0 153 60.1
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 1.1e-37 160.6 171 57.9
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 1.1e-37 160.6 171 57.9
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 1.9e-37 159.8 162 62.3
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 1.9e-37 159.8 115 75.7
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 2.4e-37 159.5 121 76.0
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 3.2e-37 159.1 175 56.0
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 7.1e-37 157.9 163 58.3
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.6e-36 156.8 88 97.7
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 2.7e-36 156.0 133 72.2
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 2.7e-36 156.0 233 48.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 3.5e-36 155.6 123 69.1
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 4.6e-36 155.2 124 66.9
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 6.0e-36 154.8 163 57.7
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 1.3e-35 153.7 119 68.9
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.9e-35 152.1 136 69.1
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.6e-35 151.4 152 57.9
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 8.6e-35 151.0 178 56.2
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 8.6e-35 151.0 193 52.3
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 5.6e-34 148.3 178 55.6
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 5.6e-34 148.3 174 52.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 7.3e-34 147.9 166 56.0
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 8.1e-33 144.4 119 68.9
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.4e-32 143.7 119 68.1
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 4.0e-32 142.1 201 49.8
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 5.2e-32 141.7 158 56.3
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 6.8e-32 141.4 140 62.9
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 1.5e-31 140.2 166 56.0
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.0e-31 139.8 120 66.7
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 2.0e-31 139.8 123 65.0
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 2.0e-31 139.8 122 64.8
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 2.0e-31 139.8 127 63.0
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 3.4e-31 139.0 124 63.7
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 3.4e-31 139.0 124 63.7
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 4.4e-31 138.7 120 65.0
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 9.9e-31 137.5 122 64.8
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 4.9e-30 135.2 116 64.7
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 9.2e-29 131.0 120 65.0
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 1.6e-28 130.2 112 63.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 3.9e-27 125.6 113 62.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 3.6e-25 119.0 148 50.0
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 1.4e-24 117.1 144 52.1
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 5.2e-24 115.2 113 59.3
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 7.6e-23 111.3 114 61.4
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 6.4e-22 108.2 132 48.5
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.3e-19 100.5 113 54.0
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.0e-16 89.0 113 49.6
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.5e-15 87.0 85 55.3
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 7.1e-13 78.2 115 40.0
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 7.9e-12 74.7 165 38.8
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.3e-11 73.9 84 58.3
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 6.2e-09 65.1 115 37.4
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 1.7e-06 57.0 60 56.7


User provided reference genes

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