Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.1e-175 619.0 323 100.0
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 9.2e-168 593.6 338 93.8
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.6e-164 581.6 319 96.6
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.8e-162 574.3 318 95.3
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.4e-160 569.7 339 90.9
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 2.4e-155 552.4 336 88.1
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 7.6e-138 494.2 332 79.2
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 1.4e-136 490.0 334 79.0
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 1.6e-135 486.5 333 77.5
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 3.0e-134 482.3 330 76.4
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 3.9e-134 481.9 330 76.1
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 3.3e-133 478.8 334 77.2
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 4.3e-133 478.4 335 76.1
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 7.4e-133 477.6 343 74.6
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.6e-132 476.5 339 75.5
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 2.1e-132 476.1 336 75.9
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 3.7e-132 475.3 335 76.1
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 1.1e-131 473.8 333 74.8
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 9.0e-131 470.7 338 74.0
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 5.9e-130 468.0 341 74.2
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 5.9e-130 468.0 335 74.0
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 1.1e-128 463.8 338 72.8
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.9e-128 463.0 339 73.5
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 4.2e-128 461.8 336 73.8
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 4.2e-128 461.8 332 72.9
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 2.1e-127 459.5 331 71.9
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 7.9e-127 457.6 331 74.3
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 2.3e-126 456.1 332 72.0
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 3.0e-126 455.7 330 73.0
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 3.0e-126 455.7 330 72.1
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.9e-126 455.3 331 74.0
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.1e-125 453.8 330 71.8
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.5e-125 453.4 334 72.2
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 7.4e-125 451.1 339 71.4
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 2.2e-124 449.5 331 70.7
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 2.2e-124 449.5 340 72.1
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 3.7e-124 448.7 346 71.7
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 5.3e-123 444.9 331 71.0
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 2.2e-121 439.5 335 69.0
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 2.9e-121 439.1 334 69.8
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 4.2e-120 435.3 331 70.7
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 9.4e-120 434.1 343 67.9
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 1.4e-118 430.3 335 66.6
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 3.0e-118 429.1 333 69.1
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 3.0e-118 429.1 331 71.3
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 3.9e-118 428.7 274 80.3
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 3.9e-118 428.7 342 66.4
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 5.1e-118 428.3 333 67.9
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 1.1e-117 427.2 346 66.5
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.5e-117 426.8 321 71.3
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 2.6e-117 426.0 330 69.4
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 2.6e-117 426.0 334 68.0
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 3.3e-117 425.6 331 68.3
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 3.3e-117 425.6 311 73.3
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 9.7e-117 424.1 331 70.7
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.3e-116 423.7 331 68.3
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 2.2e-116 422.9 331 67.4
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 3.7e-116 422.2 330 68.2
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 4.8e-116 421.8 331 70.4
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 4.8e-116 421.8 341 68.3
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 4.8e-116 421.8 354 66.7
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 8.2e-116 421.0 326 68.1
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 8.2e-116 421.0 330 67.9
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 8.2e-116 421.0 367 65.1
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 1.4e-115 420.2 330 68.2
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 2.4e-115 419.5 335 68.1
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 3.1e-115 419.1 333 67.9
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 4.1e-115 418.7 331 67.7
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 6.9e-115 417.9 329 67.2
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 9.1e-115 417.5 331 66.8
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 9.1e-115 417.5 327 68.5
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 2.6e-114 416.0 336 67.0
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 2.6e-114 416.0 343 65.9
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 3.4e-114 415.6 332 68.1
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 3.4e-114 415.6 332 68.1
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 4.5e-114 415.2 315 73.7
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 1.0e-113 414.1 331 67.4
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 1.1e-112 410.6 332 67.2
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.4e-112 410.2 363 62.8
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 9.4e-112 407.5 330 67.0
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 2.7e-111 406.0 296 72.0
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 6.1e-111 404.8 361 63.2
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 3.9e-110 402.1 404 59.4
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 8.8e-110 401.0 371 63.1
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 2.8e-108 396.0 352 61.4
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 3.7e-108 395.6 310 66.8
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 1.3e-105 387.1 364 60.4
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.3e-105 387.1 336 63.4
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 6.5e-105 384.8 309 66.7
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.5e-104 383.6 274 72.6
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 4.2e-104 382.1 310 65.8
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 2.1e-103 379.8 330 61.8
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 2.7e-103 379.4 302 69.9
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.4e-102 377.1 324 61.7
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 1.7e-100 370.2 266 72.9
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 1.7e-100 370.2 295 67.8
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 7.0e-99 364.8 339 58.1
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 2.0e-98 363.2 243 78.2
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.2e-95 354.0 331 62.5
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 2.7e-95 352.8 295 64.7
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 6.1e-95 351.7 329 59.6
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 2.0e-93 346.7 303 60.4
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 3.4e-93 345.9 305 63.3
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 9.1e-91 337.8 304 57.9
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 5.9e-90 335.1 274 65.0
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 9.5e-88 327.8 249 66.7
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.0e-86 324.3 193 83.9
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 1.3e-81 307.4 237 72.2
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 7.3e-80 301.6 212 73.1
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 4.7e-79 298.9 302 51.7
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.4e-75 287.3 207 72.5
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 1.8e-75 287.0 230 68.7
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 7.0e-75 285.0 271 55.7
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.9e-73 279.3 169 84.6
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.5e-69 267.3 187 70.1
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 1.2e-58 231.1 198 64.1
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 6.8e-54 215.3 306 41.2
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 3.4e-53 213.0 199 60.8
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 1.1e-40 171.4 270 40.7
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 2.0e-37 160.6 123 69.9
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 5.8e-37 159.1 119 68.9
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 4.2e-35 152.9 104 74.0
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 1.9e-27 127.5 110 63.6
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.5e-24 117.9 97 67.0
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 5.6e-24 115.9 86 67.4
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 2.8e-23 113.6 78 73.1
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.8e-20 103.2 61 83.6
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.8e-20 103.2 62 83.9
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 3.8e-20 103.2 204 36.8
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.5e-20 102.4 62 85.5
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.4e-19 101.3 62 85.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 1.6e-18 97.8 81 55.6
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 2.1e-18 97.4 99 48.5
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 3.9e-17 93.2 93 58.1
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 5.1e-17 92.8 109 44.0
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 8.7e-17 92.0 56 85.7
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.1e-16 91.7 55 87.3
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 9.7e-16 88.6 218 31.7
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.7e-15 86.7 98 52.0
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.1e-10 69.3 37 81.1
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 1.4e-09 68.2 42 76.2
Rhsim07G0166700 Rhododendron simsii HOM05D005156 ORTHO05D050672 1.8e-09 67.8 49 63.3
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 6.7e-09 65.9 124 37.9
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 1.1e-08 65.1 38 78.9
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 1.1e-08 65.1 40 77.5
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 1.9e-08 64.3 35 85.7


User provided reference genes

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