Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 3712.9 1856 100.0
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 3575.8 1856 96.6
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 3571.9 1856 96.4
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 3531.1 1893 94.1
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 3443.7 1851 93.2
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 3040.0 1852 82.5
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 3029.6 1860 81.2
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2783.4 1862 75.0
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2770.3 1945 72.9
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2709.1 1877 73.6
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2679.0 1853 72.7
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2674.8 1815 74.7
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2666.3 1850 71.7
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2654.4 1955 69.9
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2645.9 1856 71.9
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2640.5 1859 71.5
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2639.4 1850 71.6
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2638.2 1853 71.3
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2638.2 1850 71.5
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2605.1 1850 70.6
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2588.5 1853 70.4
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2584.7 1853 70.3
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2573.5 1907 70.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2567.7 1853 69.8
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2565.8 1956 67.9
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2563.9 1853 69.5
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2550.4 1848 69.3
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2546.9 1859 69.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2545.4 1855 69.1
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2543.5 1848 68.9
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2542.3 1856 68.9
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2541.1 1989 66.3
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2536.9 1721 73.9
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2536.1 1848 68.7
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2531.9 1895 67.7
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2527.7 1852 68.5
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2523.0 1851 67.9
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2519.2 1955 66.5
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2510.7 1862 67.7
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2506.5 1852 68.1
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2481.8 1853 68.5
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2457.6 1851 67.4
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2446.8 1853 66.5
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2429.1 1853 66.3
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2395.9 1864 65.6
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2389.8 1848 66.0
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2387.5 1856 65.8
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2379.0 1857 64.6
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2366.3 1857 64.7
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2361.6 1611 72.8
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2361.3 1855 64.2
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2358.2 1846 64.2
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2353.2 1852 65.5
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2347.0 1757 67.0
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2344.3 1857 64.1
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2338.9 1858 64.2
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2338.1 1230 95.4
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2317.0 1849 63.8
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2303.1 1855 63.1
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2283.4 1854 63.1
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2281.9 1853 62.8
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2278.1 1863 62.3
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2273.0 1853 63.1
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2271.9 1722 67.2
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2269.2 1849 62.7
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2260.7 1965 59.7
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2258.0 1750 65.9
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2241.5 1862 61.8
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2238.8 1869 61.7
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2213.3 1875 61.2
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2212.2 1893 61.0
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2211.8 1862 61.1
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2211.4 1853 61.4
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2204.9 1880 61.3
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2196.4 1854 61.3
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2184.8 1887 60.3
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2175.6 1889 60.1
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 2165.2 1888 60.4
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 2161.3 1470 73.8
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2145.9 1881 59.2
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 2120.1 1861 57.6
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 2106.3 1856 59.4
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2062.0 1808 60.8
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 2045.4 1869 58.1
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 2032.7 1488 70.0
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1819.7 1527 62.0
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1742.2 1245 69.0
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1676.8 1332 64.2
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1644.0 1769 51.3
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1597.0 1421 59.5
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1552.7 984 79.0
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1438.3 1957 42.6
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1435.6 1961 42.4
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1433.7 1059 68.6
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1387.1 1804 43.7
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1340.5 1350 55.1
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1232.2 955 64.0
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1210.7 625 97.6
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1204.1 1153 56.0
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1169.1 917 62.3
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1168.3 803 72.4
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1156.0 1879 39.0
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1149.0 1231 51.8
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 0.0e+00 1106.7 917 63.8
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 4.3e-294 1015.8 2214 33.9
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 1.3e-290 1004.2 919 58.5
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 5.2e-255 885.9 827 57.4
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.5e-241 841.3 645 68.4
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 4.3e-233 813.1 749 55.3
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.5e-222 778.1 539 71.1
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 5.8e-222 776.2 523 71.7
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.0e-218 765.4 879 48.1
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 9.0e-207 725.7 512 69.1
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.9e-188 664.8 876 47.4
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.9e-186 657.1 523 60.8
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.4e-183 647.9 1089 37.5
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.7e-179 634.4 573 61.1
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 3.0e-170 604.4 904 40.3
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.8e-160 571.2 732 45.1
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 6.7e-154 550.1 418 66.7
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 9.7e-153 546.2 434 63.6
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 2.1e-147 528.5 333 74.8
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.3e-133 482.6 439 58.1
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 1.2e-126 459.5 316 72.8
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.0e-125 456.4 541 48.2
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 1.3e-125 456.1 385 60.3
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.4e-119 435.3 521 48.0
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 5.1e-109 401.0 818 34.7
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.8e-106 392.5 320 62.5
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 6.0e-102 377.5 375 52.0
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 1.3e-101 376.3 254 73.2
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.2e-99 369.8 430 53.3
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 1.6e-99 369.4 358 56.4
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 8.4e-96 357.1 405 51.4
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 3.6e-91 341.7 320 57.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.0e-89 335.9 421 46.8
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 3.4e-89 335.1 816 31.4
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 4.0e-82 311.6 186 80.6
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 1.4e-74 286.6 343 48.1
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 1.1e-63 250.4 189 65.6
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 3.8e-48 198.7 203 53.7
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 3.6e-46 192.2 229 46.3
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 5.7e-44 184.9 133 67.7
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.1e-42 179.1 244 42.2
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 2.2e-40 172.9 160 59.4
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 3.0e-37 162.5 168 50.0
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 1.1e-36 160.6 122 67.2
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 2.0e-36 159.8 101 77.2
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 7.4e-36 157.9 473 28.3
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 4.8e-35 155.2 129 61.2
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 2.0e-33 149.8 198 41.4
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.0e-33 149.8 154 51.9
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 6.5e-32 144.8 299 33.8
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 1.9e-31 143.3 108 64.8
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 3.2e-31 142.5 162 48.8
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.2e-31 142.5 103 66.0
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 5.5e-31 141.7 160 50.0
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 1.6e-30 140.2 120 57.5
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 8.8e-29 134.4 180 45.0
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.2e-25 124.0 109 58.7
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 7.7e-25 121.3 118 54.2
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 1.3e-24 120.6 94 64.9
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 1.5e-23 117.1 97 59.8
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 6.1e-22 111.7 214 36.4
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 1.4e-21 110.5 127 46.5
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.6e-20 106.3 54 85.2
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 4.4e-20 105.5 73 71.2
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 5.7e-20 105.1 124 50.8
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 7.5e-20 104.8 86 59.3
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 2.2e-19 103.2 75 65.3
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 1.8e-18 100.1 69 63.8
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.4e-18 99.8 76 60.5
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 1.2e-17 97.4 144 45.1
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 1.7e-16 93.6 157 42.0
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 1.6e-14 87.0 63 68.3
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.4e-13 84.0 99 49.5
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 4.4e-12 79.0 63 63.5
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 4.4e-12 79.0 74 59.5
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 7.8e-09 68.2 61 59.0
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 7.8e-09 68.2 71 49.3
Sabra10G0144400 Salix brachista HOM05D003492 ORTHO05D019467 4.3e-07 62.4 131 35.9
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 5.6e-07 62.0 70 51.4
Actinidia02220 Actinidia chinensis HOM05D003492 ORTHO05D005115 9.5e-07 61.2 38 71.1


User provided reference genes

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