Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.0e-119 433.3 212 100.0
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.0e-119 433.3 212 100.0
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 7.5e-118 427.2 209 99.5
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.0e-114 416.8 209 97.6
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 3.7e-109 398.3 208 93.8
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 2.4e-100 369.0 214 86.0
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 1.9e-97 359.4 214 81.8
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 1.9e-97 359.4 224 79.9
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 9.6e-97 357.1 212 81.6
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 4.7e-96 354.8 212 80.2
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 3.1e-95 352.1 210 80.0
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 1.5e-94 349.7 209 79.9
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 2.9e-93 345.5 207 77.3
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 1.9e-92 342.8 201 81.1
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 1.9e-92 342.8 228 75.4
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 2.4e-92 342.4 210 78.1
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 2.4e-92 342.4 210 78.1
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 2.4e-92 342.4 211 77.3
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 2.4e-92 342.4 204 78.4
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 3.2e-92 342.0 212 77.8
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 7.1e-92 340.9 212 76.4
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 7.1e-92 340.9 202 82.2
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 2.7e-91 339.0 202 81.2
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 3.5e-91 338.6 207 75.4
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 7.8e-91 337.4 214 75.7
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 7.8e-91 337.4 206 78.6
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 1.3e-90 336.7 208 78.8
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 1.3e-90 336.7 212 75.0
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 1.3e-90 336.7 207 78.3
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 2.3e-90 335.9 211 74.4
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 3.0e-90 335.5 211 74.9
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 3.9e-90 335.1 212 75.0
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 8.7e-90 334.0 205 77.6
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 1.1e-89 333.6 204 74.0
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 1.1e-89 333.6 204 74.0
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 1.5e-89 333.2 200 76.0
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 1.9e-89 332.8 201 77.1
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 2.5e-89 332.4 206 77.2
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 4.3e-89 331.6 200 78.5
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 5.6e-89 331.3 208 79.8
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 9.6e-89 330.5 211 72.0
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 9.6e-89 330.5 200 75.0
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 1.6e-88 329.7 207 74.9
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 4.8e-88 328.2 210 72.4
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 1.8e-87 326.2 204 75.0
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 4.0e-87 325.1 205 72.7
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 4.0e-87 325.1 206 75.7
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 2.0e-86 322.8 208 75.5
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 2.0e-86 322.8 207 73.9
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 5.8e-86 321.2 207 74.4
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 7.6e-86 320.9 184 81.5
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 9.9e-86 320.5 184 81.0
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 1.3e-85 320.1 205 76.6
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 1.3e-85 320.1 192 76.6
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 1.7e-85 319.7 213 73.2
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 1.7e-85 319.7 192 76.6
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 1.7e-85 319.7 216 74.1
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 1.7e-85 319.7 184 81.0
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 3.8e-85 318.5 192 76.0
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 3.8e-85 318.5 192 76.0
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 3.8e-85 318.5 206 73.8
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 4.9e-85 318.2 201 74.1
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 8.4e-85 317.4 189 79.4
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 2.4e-84 315.8 206 74.8
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 9.3e-84 313.9 198 77.3
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 2.7e-83 312.4 206 73.3
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 6.0e-83 311.2 206 72.8
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 6.0e-83 311.2 188 78.7
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 3.9e-82 308.5 200 72.0
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 5.1e-82 308.1 191 77.5
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 5.1e-82 308.1 197 75.1
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 1.1e-81 307.0 209 68.9
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 6.9e-79 297.7 188 76.1
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 2.0e-78 296.2 175 79.4
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 2.6e-78 295.8 218 67.9
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.7e-77 293.1 211 69.2
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 2.9e-77 292.4 201 70.1
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 2.9e-77 292.4 176 79.0
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 1.4e-76 290.0 230 64.8
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 2.4e-76 289.3 202 69.8
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 3.2e-76 288.9 212 68.9
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 2.7e-75 285.8 287 54.4
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 6.7e-74 281.2 174 75.3
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 1.8e-71 273.1 203 68.5
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 7.6e-70 267.7 213 63.4
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 2.1e-67 259.6 158 75.9
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 3.7e-64 248.8 199 61.3
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 4.1e-63 245.4 180 67.8
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 2.6e-62 242.7 217 54.8
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 3.4e-62 242.3 145 75.9
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 1.9e-60 236.5 205 58.5
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.0e-58 230.7 116 94.8
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 1.8e-58 229.9 162 66.7
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 5.1e-58 228.4 157 67.5
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 6.7e-58 228.0 116 94.0
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 3.3e-57 225.7 149 72.5
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 5.7e-57 224.9 134 75.4
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 2.8e-56 222.6 157 68.8
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 2.8e-56 222.6 245 52.2
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 1.8e-55 219.9 158 63.9
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 5.7e-49 198.4 161 64.6
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 1.7e-48 196.8 197 55.8
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 5.3e-47 191.8 113 79.6
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 3.8e-45 185.7 111 77.5
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 3.2e-44 182.6 93 95.7
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 1.4e-42 177.2 122 72.1
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 1.1e-41 174.1 103 78.6
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 2.6e-41 172.9 159 56.6
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 3.3e-41 172.6 173 49.7
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 3.7e-40 169.1 107 72.0
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 3.7e-40 169.1 107 72.0
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 1.4e-39 167.2 106 76.4
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 2.9e-37 159.5 104 73.1
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 1.9e-36 156.8 81 85.2
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 4.7e-35 152.1 82 84.1
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 5.3e-31 138.7 93 67.7
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 2.1e-27 126.7 78 74.4
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 4.5e-22 109.0 104 51.9
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.0e-21 107.8 64 76.6
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 1.5e-17 94.0 163 36.2


User provided reference genes

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