Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-75 286.6 141 100.0
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 4.0e-75 284.6 141 99.3
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.4e-74 281.2 141 98.6
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 9.6e-69 263.5 142 91.5
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-61 240.0 141 87.2
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-61 240.0 141 87.2
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.6e-61 236.9 141 86.5
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.8e-59 232.6 149 77.9
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 4.9e-57 224.6 154 75.3
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 4.9e-57 224.6 139 79.9
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 7.1e-56 220.7 153 74.5
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 7.1e-56 220.7 153 74.5
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.5e-55 218.4 153 73.9
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 4.6e-55 218.0 154 73.4
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 6.0e-55 217.6 154 74.0
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 7.9e-55 217.2 149 72.5
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.3e-54 216.5 149 72.5
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 1.8e-54 216.1 126 83.3
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 3.9e-54 214.9 126 83.3
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 3.9e-54 214.9 137 77.4
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 5.1e-54 214.5 126 82.5
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 8.7e-54 213.8 137 78.8
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 8.7e-54 213.8 135 78.5
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 1.1e-53 213.4 131 81.7
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.1e-53 213.4 126 82.5
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.5e-53 213.0 126 82.5
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.9e-53 212.6 127 80.3
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.9e-53 212.6 153 73.2
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.5e-53 212.2 143 74.8
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.3e-53 211.8 126 81.7
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 4.3e-53 211.5 139 76.3
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 5.6e-53 211.1 139 75.5
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 5.6e-53 211.1 141 76.6
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 1.3e-52 209.9 127 79.5
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.3e-52 209.9 155 72.3
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.1e-52 209.1 157 70.1
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.8e-52 208.8 136 77.2
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 3.6e-52 208.4 144 75.7
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 4.8e-52 208.0 154 69.5
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 4.8e-52 208.0 146 74.7
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 4.8e-52 208.0 144 73.6
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 6.2e-52 207.6 148 73.0
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 6.2e-52 207.6 148 72.3
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 8.1e-52 207.2 132 75.8
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.4e-51 206.5 164 67.1
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 5.3e-51 204.5 135 74.1
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 6.9e-51 204.1 137 73.0
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 1.2e-50 203.4 126 79.4
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.2e-50 203.4 171 64.9
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.5e-50 203.0 126 78.6
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.5e-50 203.0 135 73.3
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.5e-50 203.0 154 70.8
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.5e-50 203.0 131 75.6
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 2.0e-50 202.6 155 70.3
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 3.4e-50 201.8 127 78.0
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 3.4e-50 201.8 157 70.1
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 4.5e-50 201.4 135 71.9
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 4.5e-50 201.4 127 75.6
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 7.6e-50 200.7 136 73.5
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 7.6e-50 200.7 136 73.5
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 9.9e-50 200.3 127 78.0
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 9.9e-50 200.3 135 72.6
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.3e-49 199.9 129 76.0
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.3e-49 199.9 127 76.4
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.7e-49 199.5 122 79.5
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.2e-49 199.1 133 73.7
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.8e-49 198.4 137 72.3
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 4.9e-49 198.0 135 71.9
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 8.4e-49 197.2 146 70.5
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.9e-48 196.1 159 66.0
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.9e-48 196.1 127 74.8
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.9e-48 196.1 129 73.6
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.9e-48 196.1 123 78.0
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 2.4e-48 195.7 125 74.4
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 2.4e-48 195.7 141 73.0
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 2.4e-48 195.7 141 73.0
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.2e-48 195.3 140 70.7
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 3.2e-48 195.3 141 73.0
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 4.2e-48 194.9 136 72.1
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 4.2e-48 194.9 142 70.4
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 4.2e-48 194.9 129 73.6
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 4.2e-48 194.9 158 64.6
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 4.2e-48 194.9 142 71.1
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 5.5e-48 194.5 126 76.2
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.3e-48 193.7 155 67.1
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.6e-47 193.0 142 72.5
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.6e-47 193.0 138 71.0
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.1e-47 192.6 148 68.2
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 6.0e-47 191.0 135 70.4
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.0e-47 191.0 163 65.0
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 1.8e-46 189.5 126 73.0
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 3.0e-46 188.7 139 69.8
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 3.9e-46 188.3 140 70.0
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 6.7e-46 187.6 154 66.9
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 6.7e-46 187.6 145 67.6
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 6.7e-46 187.6 156 64.1
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.7e-46 187.2 144 68.8
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.1e-45 186.8 157 63.1
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.5e-45 186.4 154 62.3
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.5e-45 186.4 145 67.6
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 3.3e-45 185.3 141 68.1
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 7.4e-45 184.1 149 66.4
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 9.6e-45 183.7 128 70.3
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 9.6e-45 183.7 124 75.8
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.3e-44 183.3 136 69.1
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.1e-44 182.6 118 74.6
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.8e-44 182.2 136 66.2
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 6.2e-44 181.0 139 66.2
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 8.1e-44 180.6 117 74.4
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.1e-43 180.3 158 62.7
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.1e-43 180.3 158 62.7
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.1e-43 178.7 116 74.1
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 4.0e-43 178.3 116 75.0
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.0e-43 178.3 132 68.2
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 1.5e-42 176.4 117 71.8
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 1.5e-42 176.4 134 67.9
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.5e-42 174.9 150 62.0
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 5.8e-42 174.5 136 65.4
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 1.3e-41 173.3 182 54.4
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 2.9e-41 172.2 116 71.6
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.8e-41 171.8 119 68.9
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.9e-41 171.4 189 52.4
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 6.5e-41 171.0 119 69.7
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 6.5e-41 171.0 129 65.1
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.4e-40 169.9 133 66.9
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 3.2e-40 168.7 136 63.2
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.1e-40 167.5 141 65.2
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 9.3e-40 167.2 120 68.3
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.7e-39 165.6 131 67.2
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 3.5e-39 165.2 101 77.2
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.0e-38 162.2 106 73.6
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 3.0e-38 162.2 101 75.2
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.5e-37 159.8 104 75.0
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.5e-37 159.8 104 75.0
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 9.6e-37 157.1 101 77.2
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 1.6e-36 156.4 118 63.6
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-36 156.0 197 48.7
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.4e-35 153.3 125 63.2
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.8e-35 152.9 102 72.5
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 5.3e-35 151.4 127 64.6
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 9.0e-35 150.6 155 53.5
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 9.0e-35 150.6 125 64.0
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 9.0e-35 150.6 119 64.7
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 2.2e-33 146.0 123 61.8
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.1e-32 143.7 117 58.1
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 5.7e-29 131.3 95 67.4
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 1.2e-26 123.6 106 60.4
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 1.4e-24 116.7 118 49.2
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 4.6e-23 111.7 76 76.3
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 1.8e-22 109.8 64 79.7
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 2.3e-22 109.4 133 46.6
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 8.8e-22 107.5 58 86.2
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 3.3e-21 105.5 68 75.0
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.1e-19 100.5 126 50.8
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.8e-19 99.8 59 76.3
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 3.1e-19 99.0 60 80.0
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 1.2e-18 97.1 74 67.6
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 5.5e-16 88.2 75 60.0
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 4.7e-15 85.1 75 58.7
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 6.1e-15 84.7 75 58.7
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.4e-14 83.6 47 80.9
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 4.8e-12 75.1 132 34.8
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 8.2e-12 74.3 153 32.7
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 9.1e-11 70.9 120 40.0
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 3.2e-08 62.4 39 69.2


User provided reference genes

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