Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1953.7 1003 100.0
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1895.6 1028 95.4
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1885.9 1031 95.0
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1884.4 1024 95.2
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1871.7 1024 94.6
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1824.7 1028 91.8
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1637.1 1031 82.5
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1635.5 1024 82.1
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1569.3 974 82.6
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1548.1 1030 78.4
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1527.7 1041 76.3
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1527.3 1027 76.6
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1521.5 1031 76.5
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1517.3 1023 77.1
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1516.1 1029 76.0
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1512.7 1023 76.1
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1499.2 1038 75.2
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1498.4 1031 74.8
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1494.2 1035 75.3
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1493.0 1038 75.0
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1482.6 1023 73.8
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1476.1 999 75.9
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1472.6 1022 74.6
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1466.8 1005 75.3
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1463.7 1022 73.4
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1463.0 1022 73.0
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1461.8 1033 74.4
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1461.4 1033 73.8
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1460.3 1035 73.9
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1446.4 1079 71.6
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1444.5 1023 72.8
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1441.8 1033 73.0
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1441.0 1039 72.8
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1439.5 1056 71.5
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1438.7 1016 73.9
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1436.8 1020 74.1
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1435.2 1038 72.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1435.2 1029 73.3
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1433.7 1042 72.3
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1433.3 1057 71.7
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1431.8 1032 72.5
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1431.4 1032 72.1
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1429.8 1036 73.0
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1422.5 1005 73.2
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1420.2 1036 72.0
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1417.1 1015 73.4
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1416.0 1017 73.3
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1416.0 1070 70.7
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1413.3 1029 71.5
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1410.6 1032 72.7
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1404.0 1028 72.0
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1403.3 1032 72.7
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1402.9 1048 71.2
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1400.6 1032 72.6
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 1025 72.9
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1396.3 1003 72.0
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1395.9 1031 71.9
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1393.3 1018 70.8
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1392.1 1038 71.5
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1391.7 1023 73.0
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1384.8 1036 70.7
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1384.8 1036 70.7
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1382.9 1025 70.4
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1382.5 1027 70.5
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1377.1 1025 70.1
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1376.3 1036 70.8
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1375.5 1033 71.4
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1370.1 1036 69.9
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1364.7 1013 70.6
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1362.4 1005 71.2
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 1025 69.3
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1356.7 1006 71.0
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1356.7 1035 69.6
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1352.8 1031 68.6
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1350.5 1029 69.0
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1349.3 1029 69.0
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1346.3 1029 68.8
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 1012 69.5
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1343.6 912 74.9
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1060 68.8
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1013 70.3
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1337.8 1018 69.9
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1334.7 1071 66.8
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1334.3 1027 68.5
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1332.8 1017 68.8
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1330.1 1005 70.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1326.2 1032 67.5
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1325.5 1013 69.5
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1316.6 1000 69.6
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1309.3 1005 69.0
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 1010 69.1
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 1006 69.4
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1303.5 1038 66.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1303.5 1034 66.6
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1303.1 1006 69.1
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1302.7 887 76.8
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 1006 69.1
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1298.5 1005 68.9
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1294.6 1018 67.5
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1287.3 1015 68.0
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1287.3 1015 68.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1286.9 1015 67.9
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1285.0 886 76.4
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1270.4 982 68.3
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1265.0 1012 67.3
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1264.6 1030 65.5
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1264.6 913 73.8
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1264.6 1038 65.0
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1261.1 985 67.8
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1258.4 1029 65.8
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1255.7 1006 67.0
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1255.7 1026 65.9
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1254.2 1030 65.3
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1243.4 1004 66.2
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1241.1 1023 65.3
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1236.5 1017 65.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1227.6 1042 64.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1186.0 998 64.9
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1172.5 1028 61.1
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1172.1 994 63.4
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1156.0 928 66.9
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1144.8 1026 61.2
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1131.3 1042 60.7
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1128.6 1035 61.4
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1100.5 1019 60.2
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1094.3 844 67.4
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1086.6 1027 57.9
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1076.6 1059 57.9
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 3.2e-291 1005.4 988 57.6
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 3.7e-284 981.9 1031 56.8
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.7e-284 981.9 803 67.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.6e-282 976.5 908 57.9
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.2e-266 923.7 848 60.0
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 5.1e-265 918.3 714 69.6
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.8e-263 912.5 736 68.9
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.3e-255 887.1 980 51.9
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 5.1e-241 838.6 1003 49.0
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.1e-234 815.1 974 49.0
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.9e-228 796.2 1007 47.0
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.5e-227 793.1 976 48.4
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 2.9e-220 769.6 834 51.7
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.3e-212 744.2 803 52.6
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.2e-211 739.2 715 61.8
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 9.8e-184 648.3 904 43.3
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.7e-183 647.5 655 55.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 4.4e-176 622.9 831 49.3
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 9.2e-174 615.1 630 55.6
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 6.2e-162 575.9 957 38.7
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.5e-160 571.2 622 53.5
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 7.1e-158 562.4 666 52.0
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.9e-148 530.0 636 49.2
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 3.0e-140 503.8 1156 33.3
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.2e-122 444.5 527 50.3
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.4e-121 441.8 637 45.2
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 3.3e-115 420.6 415 54.5
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.3e-113 413.3 276 79.3
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.3e-98 365.5 236 81.4
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.7e-85 320.5 317 56.2
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.2e-83 315.8 268 64.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 1.3e-71 275.8 624 34.5
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 3.1e-68 264.6 281 56.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.5e-54 219.2 213 54.0
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.8e-53 214.9 713 27.2
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-49 203.0 158 64.6
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-48 199.5 176 55.7
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 4.6e-48 197.6 156 64.7
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.4e-44 186.0 911 23.5
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 3.3e-38 164.9 150 56.0
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.2e-35 156.4 186 50.0
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.2e-33 147.9 214 38.3
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.9e-26 125.2 130 50.0
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 4.3e-22 111.3 88 59.1
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 4.3e-22 111.3 88 59.1
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.6e-21 109.4 132 46.2
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 3.3e-14 85.1 85 60.0
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 9.6e-14 83.6 125 44.8
MD05G1190300 Malus domestica HOM05D003977 ORTHO05D004536 9.7e-06 57.0 71 45.1


User provided reference genes

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