Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.5e-210 736.1 414 100.0
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 7.1e-205 717.2 415 98.1
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 1.5e-202 709.5 414 97.3
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.6e-201 706.1 414 96.9
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 1.3e-169 600.1 430 80.2
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.7e-166 589.7 342 94.7
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.0e-86 324.7 423 53.4
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 4.3e-85 319.3 431 52.7
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 7.4e-85 318.5 426 53.1
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 4.8e-84 315.8 445 50.6
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 2.2e-81 307.0 421 50.1
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 3.8e-81 306.2 421 51.5
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 3.8e-81 306.2 424 52.1
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 1.1e-80 304.7 419 53.5
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.8e-78 297.4 365 54.0
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 6.7e-78 295.4 431 48.5
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 1.6e-76 290.8 427 50.1
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 3.7e-76 289.7 419 49.4
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 6.2e-76 288.9 426 51.6
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 8.1e-76 288.5 420 48.8
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 1.1e-75 288.1 430 47.7
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 4.0e-75 286.2 508 44.1
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 3.4e-74 283.1 446 45.5
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 1.6e-71 274.2 426 47.4
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 2.7e-71 273.5 461 46.9
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 1.8e-70 270.8 298 56.0
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 6.7e-70 268.9 430 47.9
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 6.7e-70 268.9 441 47.8
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 1.5e-69 267.7 420 47.6
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 3.3e-69 266.5 429 46.2
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 4.3e-69 266.2 424 47.9
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 2.1e-68 263.8 431 49.7
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 1.4e-67 261.2 427 47.5
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 1.4e-67 261.2 429 46.6
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 9.0e-67 258.5 421 45.6
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 1.2e-66 258.1 444 47.7
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 5.9e-66 255.8 429 45.0
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 1.1e-64 251.5 442 45.9
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 6.1e-63 245.7 421 46.6
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 1.0e-62 245.0 424 45.0
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 1.3e-62 244.6 311 52.7
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 3.9e-62 243.0 438 45.9
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 3.9e-62 243.0 432 46.5
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 1.5e-61 241.1 420 44.5
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 4.3e-61 239.6 327 51.7
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 7.4e-61 238.8 439 44.6
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 1.6e-60 237.7 432 44.9
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 2.4e-59 233.8 438 43.8
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 3.1e-59 233.4 427 43.6
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 3.1e-59 233.4 422 46.4
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 3.1e-59 233.4 315 51.1
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 6.9e-59 232.3 367 46.6
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 2.2e-57 227.3 430 42.6
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 2.2e-57 227.3 425 46.6
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 2.9e-57 226.9 299 53.2
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 8.5e-57 225.3 433 42.0
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 1.1e-56 224.9 426 43.0
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 1.4e-56 224.6 427 45.4
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 7.2e-56 222.2 450 42.7
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 7.2e-56 222.2 435 42.1
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 7.2e-56 222.2 432 43.3
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 9.4e-56 221.9 431 47.1
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 9.4e-56 221.9 363 46.0
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 2.1e-55 220.7 422 43.4
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 3.0e-54 216.9 434 41.7
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 2.6e-53 213.8 434 41.7
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 9.7e-53 211.8 422 42.4
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 2.2e-52 210.7 424 43.6
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 2.2e-52 210.7 436 42.7
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.8e-52 210.3 417 41.7
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 2.8e-52 210.3 320 49.4
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 4.8e-52 209.5 311 51.1
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 4.8e-52 209.5 454 41.4
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 8.2e-52 208.8 436 42.4
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 3.1e-51 206.8 431 41.5
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 3.4e-50 203.4 406 45.1
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 6.5e-49 199.1 402 42.0
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.1e-48 198.4 191 60.2
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 7.2e-48 195.7 388 41.5
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 3.6e-47 193.4 351 43.3
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 6.1e-47 192.6 427 41.0
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.0e-46 191.8 263 51.0
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.8e-46 191.0 348 42.8
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 3.9e-46 189.9 312 46.8
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 3.9e-46 189.9 289 44.3
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 6.7e-46 189.1 435 40.2
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.5e-45 188.0 337 43.3
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 2.0e-45 187.6 287 47.7
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 2.0e-45 187.6 337 43.3
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 3.3e-45 186.8 307 45.3
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 4.4e-45 186.4 466 38.6
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 4.4e-45 186.4 422 43.4
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 9.7e-45 185.3 445 39.3
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 1.3e-44 184.9 326 44.5
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.2e-44 184.1 275 49.5
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 1.1e-43 181.8 422 40.3
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 2.4e-43 180.6 295 45.8
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 7.0e-43 179.1 358 39.1
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 1.6e-42 177.9 463 39.1
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 1.6e-42 177.9 238 46.6
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 2.2e-41 174.1 404 43.1
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 6.5e-41 172.6 364 37.1
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 6.5e-41 172.6 393 35.9
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 1.5e-40 171.4 293 43.0
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 1.0e-38 165.2 414 34.3
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 4.8e-36 156.4 514 32.1
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 1.8e-35 154.5 426 35.7
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 5.3e-35 152.9 433 38.6
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 6.5e-33 146.0 159 56.0
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 1.1e-32 145.2 215 47.0
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 1.5e-32 144.8 295 38.0
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 4.2e-32 143.3 397 37.3
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 1.1e-27 128.6 227 43.6
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 1.8e-27 127.9 276 39.5
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 4.1e-27 126.7 210 41.0
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 5.4e-27 126.3 193 48.2
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 5.4e-27 126.3 257 40.1
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 1.0e-25 122.1 398 35.4
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 8.6e-25 119.0 109 62.4
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 3.0e-22 110.5 469 32.0
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 5.2e-22 109.8 207 42.5
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 4.9e-20 103.2 110 51.8
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 6.3e-20 102.8 117 48.7
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 1.5e-16 91.7 297 33.3
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 1.3e-12 78.6 50 74.0
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 2.0e-10 71.2 117 34.2
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 2.7e-10 70.9 49 69.4
Cre02.g105050 Chlamydomonas reinhardtii HOM05D006277 ORTHO05D007673 1.6e-07 61.6 133 32.3


User provided reference genes

Program Settings