Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 4.3e-281 971.1 658 100.0
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 3.7e-272 941.4 658 97.7
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 5.0e-269 931.0 658 93.2
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.8e-263 912.5 656 94.2
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 3.2e-223 778.9 665 85.3
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 1.5e-169 600.5 683 68.7
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 2.2e-168 596.7 617 74.2
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 2.6e-161 573.2 487 61.6
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 1.5e-153 547.4 478 70.7
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 1.9e-151 540.4 476 70.6
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 1.6e-137 494.2 452 67.0
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 2.2e-131 473.8 643 56.8
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 3.1e-130 469.9 482 63.1
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 5.9e-129 465.7 429 56.6
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 3.2e-127 459.9 427 65.8
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 5.5e-127 459.1 459 63.4
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 1.4e-125 454.5 419 66.8
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 2.0e-124 450.7 461 64.0
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 4.4e-124 449.5 423 65.2
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 7.5e-124 448.7 414 66.9
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 9.8e-124 448.4 430 66.7
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 2.8e-123 446.8 465 62.4
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 4.9e-123 446.0 416 68.8
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 2.4e-122 443.7 429 63.2
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 1.6e-121 441.0 416 68.5
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.0e-120 438.3 447 62.9
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 1.7e-120 437.6 462 63.6
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 2.3e-120 437.2 410 67.1
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 5.0e-120 436.0 445 62.2
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 6.6e-120 435.6 462 63.2
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 4.3e-119 433.0 462 63.0
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 4.3e-119 433.0 437 61.8
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 2.1e-118 430.6 410 68.3
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 2.8e-118 430.3 410 67.8
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 3.6e-118 429.9 353 71.1
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 4.7e-118 429.5 358 70.1
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 8.0e-118 428.7 428 62.1
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 8.0e-118 428.7 424 64.9
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 1.0e-117 428.3 472 59.7
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 2.3e-117 427.2 472 59.5
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 3.0e-117 426.8 467 60.4
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 3.0e-117 426.8 409 64.5
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 8.9e-117 425.2 395 54.9
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 8.9e-117 425.2 404 65.1
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 1.2e-116 424.9 352 70.2
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 1.5e-116 424.5 409 63.6
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 1.5e-116 424.5 356 71.3
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 4.4e-116 422.9 416 64.9
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 2.9e-115 420.2 410 62.4
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 6.4e-115 419.1 424 63.7
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 6.4e-115 419.1 426 61.5
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 8.3e-115 418.7 453 62.9
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 2.4e-114 417.2 419 62.5
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 4.1e-114 416.4 417 60.2
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 1.6e-113 414.5 403 64.3
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 1.6e-113 414.5 372 68.8
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 2.7e-113 413.7 404 57.9
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 3.5e-113 413.3 468 58.5
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 3.5e-113 413.3 431 59.4
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 4.6e-113 412.9 397 65.2
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 5.9e-113 412.5 431 59.4
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 1.0e-112 411.8 414 63.8
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.3e-112 411.4 421 59.9
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 1.3e-112 411.4 426 62.4
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 2.3e-112 410.6 418 63.9
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 6.6e-112 409.1 359 69.1
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 8.6e-112 408.7 392 58.7
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 2.5e-111 407.1 432 61.8
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 4.3e-111 406.4 426 62.7
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 5.6e-111 406.0 416 63.5
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 7.3e-111 405.6 426 63.1
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 9.5e-111 405.2 440 60.9
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 4.7e-110 402.9 327 74.3
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 1.0e-109 401.7 425 50.1
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 5.2e-109 399.4 359 69.1
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 2.0e-108 397.5 439 59.9
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 1.3e-107 394.8 424 62.3
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 1.7e-107 394.4 450 57.1
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 4.9e-107 392.9 418 60.8
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 4.9e-107 392.9 356 55.3
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 1.9e-106 391.0 349 67.0
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 4.1e-106 389.8 447 59.1
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 7.0e-106 389.0 421 60.1
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 7.0e-106 389.0 327 74.6
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 1.2e-105 388.3 462 56.7
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.0e-105 387.5 634 45.3
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.0e-105 387.5 634 45.3
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 2.5e-103 380.6 352 66.8
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 2.5e-103 380.6 317 71.3
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 6.2e-102 375.9 354 67.5
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 8.1e-102 375.6 354 67.2
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 8.1e-102 375.6 354 67.2
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 3.1e-101 373.6 354 67.5
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 4.4e-100 369.8 302 75.8
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 9.8e-100 368.6 343 64.4
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 2.2e-99 367.5 354 66.7
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 1.9e-98 364.4 317 69.7
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 3.2e-98 363.6 356 61.5
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 8.1e-94 349.0 433 54.5
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 2.9e-91 340.5 372 59.9
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 1.6e-89 334.7 427 54.6
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 1.4e-66 258.5 372 41.1
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 5.5e-66 256.5 188 63.8
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 9.6e-63 245.7 485 35.9
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 7.6e-52 209.5 383 36.6
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.4e-50 205.3 197 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 1.4e-40 172.2 364 44.5
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 6.3e-38 163.3 351 37.3
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 2.9e-27 127.9 336 41.7
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 6.1e-25 120.2 203 57.6
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 1.8e-24 118.6 295 29.2
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 5.7e-23 113.6 346 26.3
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.5e-15 89.0 48 79.2
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 2.8e-06 58.2 100 32.0


User provided reference genes

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