Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.1e-48 194.1 100 100.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 9.5e-47 189.9 100 99.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.8e-45 185.7 100 96.0
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 2.3e-45 185.3 100 96.0
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.6e-41 172.6 100 94.0
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 2.3e-40 168.7 100 88.0
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 7.3e-39 163.7 102 86.3
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 9.5e-39 163.3 100 85.0
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 4.7e-38 161.0 99 83.8
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.1e-37 159.8 98 83.7
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 5.2e-37 157.5 98 81.6
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 6.8e-37 157.1 85 97.6
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 1.5e-36 156.0 100 78.0
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 2.6e-36 155.2 104 81.7
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 4.4e-36 154.5 104 79.8
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 4.4e-36 154.5 89 88.8
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 5.8e-36 154.1 89 86.5
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 7.6e-36 153.7 101 80.2
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.3e-35 152.9 103 78.6
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.7e-35 152.5 100 81.0
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.2e-35 152.1 95 81.1
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 3.8e-35 151.4 100 76.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 4.9e-35 151.0 86 90.7
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 4.9e-35 151.0 98 80.6
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 6.4e-35 150.6 96 79.2
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 8.4e-35 150.2 86 86.0
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.4e-35 150.2 88 86.4
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.1e-34 149.8 94 78.7
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.4e-34 149.4 88 85.2
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.4e-34 149.4 89 85.4
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.9e-34 149.1 100 80.0
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 2.4e-34 148.7 86 86.0
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 2.4e-34 148.7 100 80.0
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 4.2e-34 147.9 91 83.5
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 4.2e-34 147.9 97 79.4
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.2e-34 147.9 97 76.3
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 7.1e-34 147.1 100 73.0
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 7.1e-34 147.1 101 74.3
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.6e-33 146.0 103 72.8
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.6e-33 146.0 102 75.5
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.6e-33 146.0 85 85.9
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 2.1e-33 145.6 99 73.7
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 2.1e-33 145.6 89 83.1
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.5e-33 144.8 103 74.8
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 3.5e-33 144.8 89 82.0
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 4.6e-33 144.4 96 77.1
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 7.8e-33 143.7 97 78.4
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 1.3e-32 142.9 92 79.3
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 2.3e-32 142.1 95 75.8
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.0e-32 141.7 88 81.8
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 3.0e-32 141.7 92 79.3
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 3.0e-32 141.7 91 78.0
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 5.1e-32 141.0 100 76.0
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 5.1e-32 141.0 81 90.1
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 6.6e-32 140.6 80 87.5
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 8.7e-32 140.2 96 76.0
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 8.7e-32 140.2 98 74.5
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.9e-31 139.0 87 79.3
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.9e-31 139.0 81 88.9
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.9e-31 139.0 81 88.9
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.9e-31 139.0 81 88.9
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 2.5e-31 138.7 84 81.0
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 5.6e-31 137.5 87 81.6
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 5.6e-31 137.5 87 81.6
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 9.6e-31 136.7 80 86.2
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 9.6e-31 136.7 103 71.8
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-30 136.3 100 74.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.3e-30 136.3 88 77.3
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.3e-30 136.3 87 81.6
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.3e-30 136.3 104 71.2
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.1e-30 135.6 98 71.4
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.1e-30 135.6 101 72.3
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 3.6e-30 134.8 86 81.4
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 6.2e-30 134.0 81 82.7
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 6.2e-30 134.0 81 84.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 8.1e-30 133.7 93 75.3
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 8.1e-30 133.7 86 80.2
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 8.1e-30 133.7 88 77.3
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 8.1e-30 133.7 95 74.7
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.1e-29 133.3 104 70.2
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.8e-29 132.5 84 81.0
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.8e-29 132.5 84 81.0
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 2.4e-29 132.1 106 70.8
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.4e-29 132.1 84 81.0
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 3.1e-29 131.7 104 70.2
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 6.9e-29 130.6 95 70.5
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 6.9e-29 130.6 95 70.5
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 6.9e-29 130.6 81 84.0
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.2e-28 129.8 95 68.4
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.5e-28 129.4 95 70.5
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.5e-28 129.4 95 69.5
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.0e-28 129.0 84 75.0
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 2.6e-28 128.6 78 83.3
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 3.4e-28 128.3 95 67.4
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 3.4e-28 128.3 95 68.4
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.4e-28 128.3 95 68.4
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.4e-28 128.3 79 81.0
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 4.4e-28 127.9 81 77.8
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 4.4e-28 127.9 95 68.4
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.4e-28 127.9 88 77.3
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.6e-28 127.1 88 77.3
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.3e-27 126.3 91 70.3
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-27 126.3 95 66.3
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-27 126.3 91 70.3
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.3e-27 126.3 91 70.3
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-27 126.3 95 66.3
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-27 126.3 95 66.3
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 1.3e-27 126.3 81 81.5
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.7e-27 125.9 81 82.7
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 4.9e-27 124.4 81 80.2
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 4.9e-27 124.4 73 89.0
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 6.4e-27 124.0 81 72.8
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 6.4e-27 124.0 81 72.8
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 6.4e-27 124.0 81 72.8
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 6.4e-27 124.0 81 72.8
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 6.4e-27 124.0 78 82.1
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.4e-26 122.1 82 74.4
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 4.2e-26 121.3 78 83.3
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 9.3e-26 120.2 82 73.2
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 9.3e-26 120.2 81 79.0
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 2.1e-25 119.0 80 78.8
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 2.7e-25 118.6 79 74.7
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 2.7e-25 118.6 79 74.7
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 2.7e-25 118.6 79 74.7
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 2.7e-25 118.6 76 80.3
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.9e-24 114.8 74 81.1
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.5e-23 112.8 83 65.1
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.9e-23 112.5 76 75.0
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.3e-23 111.7 83 73.5
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 4.8e-22 107.8 80 73.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 6.9e-21 104.0 73 75.3
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 9.0e-21 103.6 88 58.0
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 4.5e-20 101.3 78 65.4
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 9.9e-20 100.1 72 77.8
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.3e-19 99.8 78 67.9
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 4.2e-18 94.7 77 62.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 4.6e-17 91.3 78 62.8
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.9e-17 90.5 67 70.1
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.8e-16 89.4 95 54.7
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.3e-16 89.0 58 75.9
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.4e-15 84.0 56 73.2
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.4e-15 84.0 56 73.2
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 1.4e-13 79.7 83 49.4
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.5e-12 76.3 51 68.6
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.9e-07 59.3 40 75.0


User provided reference genes

Program Settings