Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1338.6 719 100.0
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1155.6 709 90.7
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1127.9 751 82.2
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1125.9 752 82.4
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.0e-259 898.7 704 74.0
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.9e-237 826.2 475 96.0
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 7.2e-237 824.3 477 94.8
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.8e-230 802.0 723 66.5
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.8e-225 785.8 722 66.1
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 4.5e-191 672.2 784 55.4
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.7e-177 627.1 727 58.0
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.1e-141 508.1 356 81.2
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 5.4e-67 260.0 458 44.1
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 8.6e-49 199.5 730 33.4
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-46 192.6 732 33.1
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 4.0e-46 190.7 456 35.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.4e-45 187.6 697 32.6
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 7.6e-45 186.4 730 33.4
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.3e-41 174.9 691 32.6
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.0e-41 174.5 649 30.8
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.5e-40 172.2 478 35.4
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 2.5e-40 171.4 404 38.9
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 3.6e-39 167.5 372 38.7
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 6.4e-36 156.8 386 37.0
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 6.4e-36 156.8 750 30.8
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 8.4e-36 156.4 429 35.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.4e-35 155.6 419 35.8
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 4.2e-35 154.1 439 33.9
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 5.4e-35 153.7 573 30.7
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 5.4e-35 153.7 407 36.6
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 9.3e-35 152.9 701 29.2
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.1e-34 151.8 451 33.3
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 3.5e-34 151.0 372 38.4
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 7.9e-34 149.8 407 36.9
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 3.9e-33 147.5 689 31.8
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 8.7e-33 146.4 380 33.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 8.7e-33 146.4 402 33.1
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 4.3e-32 144.1 541 31.1
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.3e-31 142.5 561 31.2
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 6.2e-31 140.2 814 26.8
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 4.0e-30 137.5 731 28.2
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 4.0e-30 137.5 562 30.8
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 6.9e-30 136.7 413 33.7
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 9.0e-30 136.3 806 28.3
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.5e-29 135.6 736 28.3
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.3e-28 132.5 458 31.9
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 6.4e-28 130.2 396 35.1
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 6.4e-28 130.2 450 33.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 2.4e-27 128.3 402 31.6
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 4.2e-27 127.5 352 36.1
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.6e-26 125.6 326 34.0
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.1e-26 125.2 378 32.0
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 2.1e-26 125.2 532 29.9
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.5e-24 119.0 416 32.0
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 7.4e-24 116.7 399 30.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 9.6e-24 116.3 502 28.7
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 3.7e-23 114.4 273 37.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 8.1e-23 113.2 407 32.7
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.4e-22 112.5 741 27.5
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.4e-22 112.5 378 31.2
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.4e-22 112.5 382 33.2
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.8e-22 112.1 736 27.3
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.0e-22 110.9 399 29.6
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 4.0e-22 110.9 552 29.0
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.3e-22 110.5 373 31.6
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.2e-21 109.4 692 27.9
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.5e-21 109.0 661 28.3
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 2.0e-21 108.6 303 35.3
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.5e-21 107.5 350 32.9
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 7.6e-21 106.7 728 28.0
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.3e-20 105.9 547 28.0
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.2e-20 105.1 720 27.9
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.9e-19 102.1 141 46.8
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.9e-19 102.1 441 29.9
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.2e-19 101.3 261 34.9
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 4.2e-19 100.9 454 31.1
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 4.2e-19 100.9 454 31.1
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 7.1e-19 100.1 689 28.3
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-18 99.4 452 29.0
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.2e-18 99.4 377 31.8
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 2.1e-18 98.6 450 29.1
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.7e-18 98.2 696 25.4
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 4.6e-18 97.4 718 25.9
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 4.6e-18 97.4 388 28.4
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 4.6e-18 97.4 189 39.2
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 7.9e-18 96.7 720 25.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 7.9e-18 96.7 499 28.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.8e-17 95.5 453 29.6
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.3e-17 95.1 427 31.1
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 5.1e-17 94.0 204 38.7
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 5.1e-17 94.0 389 29.3
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 6.7e-17 93.6 456 29.4
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.7e-17 93.2 422 29.9
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.1e-16 92.8 385 30.1
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.1e-16 92.8 667 24.6
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.1e-16 92.8 451 29.3
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.5e-16 92.4 707 26.9
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.9e-16 92.0 383 31.1
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 9.6e-16 89.7 463 27.6
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.6e-15 89.0 691 26.2
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.6e-15 89.0 383 26.1
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.6e-15 89.0 741 25.8
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.8e-15 88.2 396 30.1
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.7e-15 87.8 420 29.0
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.8e-14 85.5 386 28.8
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 3.1e-14 84.7 122 47.5
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.1e-14 84.7 428 28.0
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 3.1e-14 84.7 372 29.6
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 4.1e-14 84.3 416 27.9
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.1e-14 84.3 430 26.3
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 9.0e-14 83.2 347 28.8
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.2e-13 82.8 383 28.2
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.2e-13 82.8 712 24.7
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.2e-13 82.8 294 33.0
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 7.6e-13 80.1 666 26.4
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.3e-12 79.3 367 25.9
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.7e-12 79.0 400 28.5
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.2e-11 74.7 655 27.3
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-10 72.8 338 29.0
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.2e-10 72.8 300 30.7
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.6e-10 72.4 171 37.4
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 2.1e-10 72.0 280 32.5
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 2.7e-10 71.6 421 26.8
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 7.9e-10 70.1 301 31.6
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 1.8e-09 68.9 216 34.3
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-09 68.2 496 25.6
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 3.9e-09 67.8 262 29.0
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 5.1e-09 67.4 410 26.8
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 8.7e-09 66.6 414 26.1
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.1e-08 66.2 251 31.1
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 2.2e-07 62.0 428 26.6
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 4.8e-07 60.8 400 26.8
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 6.3e-07 60.5 167 35.3
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.1e-06 59.7 300 30.7
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.4e-06 59.3 694 24.9
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 5.3e-06 57.4 89 42.7
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 5.3e-06 57.4 350 25.7
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.3e-06 57.4 169 33.1
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 6.9e-06 57.0 195 29.2
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 6.9e-06 57.0 170 29.4
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 9.1e-06 56.6 394 26.1
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 9.1e-06 56.6 98 42.9


User provided reference genes

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