Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.8e-159 565.8 284 100.0
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.3e-157 559.7 284 98.9
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.6e-155 552.7 284 97.5
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.6e-155 552.7 284 97.5
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.0e-155 550.8 284 96.8
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.2e-147 526.6 269 97.8
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.8e-144 515.4 269 96.7
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 3.6e-139 498.4 284 87.7
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 8.8e-114 414.1 288 72.2
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 1.0e-101 374.0 289 67.1
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 2.3e-101 372.9 290 65.9
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 8.6e-101 370.9 290 65.9
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 1.9e-100 369.8 263 69.2
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 6.1e-99 364.8 281 66.9
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 1.8e-98 363.2 271 66.4
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 2.3e-98 362.8 280 66.8
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 4.4e-97 358.6 280 66.1
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 7.5e-97 357.8 291 64.3
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 4.9e-96 355.1 279 65.6
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 1.1e-95 354.0 279 64.5
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 3.2e-95 352.4 274 66.1
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 3.2e-95 352.4 274 65.0
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 5.4e-95 351.7 280 63.2
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 5.4e-95 351.7 279 64.2
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 7.8e-94 347.8 272 63.2
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 7.8e-94 347.8 274 62.8
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 7.8e-94 347.8 281 64.1
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.0e-93 347.4 283 61.1
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.7e-93 346.7 279 61.6
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 1.7e-93 346.7 270 64.4
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 2.3e-93 346.3 278 63.3
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.1e-92 344.0 248 66.1
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 4.3e-92 342.0 261 64.0
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 5.6e-92 341.7 279 62.0
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.2e-91 340.5 272 62.9
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 2.8e-91 339.3 226 72.6
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 6.2e-91 338.2 283 61.8
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 1.8e-90 336.7 265 64.5
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 1.7e-88 330.1 277 62.5
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 2.4e-87 326.2 298 58.1
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 5.4e-87 325.1 269 61.3
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 7.8e-86 321.2 287 58.2
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.0e-85 320.9 332 52.7
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 8.6e-85 317.8 243 64.6
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.1e-84 317.4 271 59.0
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.5e-84 316.2 271 59.4
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 3.3e-84 315.8 283 57.2
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 3.3e-84 315.8 263 59.7
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 5.6e-84 315.1 263 59.7
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 7.3e-84 314.7 286 57.3
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 3.6e-83 312.4 279 56.3
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 2.3e-82 309.7 268 57.5
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 2.3e-82 309.7 260 59.6
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 2.3e-82 309.7 266 59.4
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 3.1e-82 309.3 277 57.8
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 4.0e-82 308.9 276 57.2
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 5.2e-82 308.5 249 61.4
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 6.8e-82 308.1 259 60.2
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 1.5e-81 307.0 260 58.8
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 1.5e-81 307.0 276 54.7
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 3.4e-81 305.8 283 55.8
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 3.4e-81 305.8 283 55.8
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 3.4e-81 305.8 283 55.8
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 5.8e-81 305.1 291 56.4
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.7e-80 303.5 258 58.5
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 1.7e-80 303.5 289 55.7
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 1.7e-80 303.5 240 61.7
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 2.2e-80 303.1 259 58.3
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 2.2e-80 303.1 283 54.4
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 2.9e-80 302.8 283 54.4
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 2.9e-80 302.8 284 54.2
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 3.7e-80 302.4 239 61.5
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 3.7e-80 302.4 293 54.9
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 1.9e-79 300.1 279 55.6
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 2.4e-79 299.7 246 60.2
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 3.2e-79 299.3 273 56.0
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 3.2e-79 299.3 273 56.0
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 7.1e-79 298.1 256 57.4
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.2e-78 297.4 291 54.3
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 2.1e-78 296.6 239 61.1
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.3e-77 293.9 261 55.9
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 9.5e-76 287.7 266 54.9
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 1.6e-75 287.0 264 53.8
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 2.8e-75 286.2 266 54.9
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 4.0e-74 282.3 266 54.9
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 6.8e-74 281.6 301 50.5
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 1.2e-73 280.8 258 53.9
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.2e-73 280.8 300 50.3
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.2e-73 280.8 230 62.6
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 2.2e-72 276.6 216 67.6
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 4.9e-72 275.4 263 53.6
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 6.4e-72 275.0 294 54.4
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 1.3e-69 267.3 233 54.5
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 5.1e-69 265.4 283 50.2
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 4.3e-68 262.3 231 56.7
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 5.6e-68 261.9 281 52.3
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.8e-66 256.9 217 58.1
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 4.2e-63 245.7 237 51.5
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 1.2e-62 244.2 312 47.4
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 2.3e-61 240.0 208 59.1
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.5e-60 237.3 276 50.0
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 2.4e-58 229.9 384 36.7
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.0e-58 229.2 170 74.1
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.4e-57 226.1 237 52.7
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.6e-57 224.9 167 73.1
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 8.4e-48 194.9 272 42.6
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 9.3e-47 191.4 188 50.0
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 4.3e-44 182.6 239 42.7
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 1.4e-39 167.5 237 41.4
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 3.1e-34 149.8 264 34.8
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.4e-33 146.4 99 64.6
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.4e-33 146.4 99 64.6
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 3.8e-32 142.9 143 56.6
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 5.0e-32 142.5 243 33.7
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.5e-32 142.1 105 72.4
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 2.7e-30 136.7 205 43.9
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 4.3e-28 129.4 94 73.4
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 2.2e-27 127.1 146 48.6
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.8e-26 124.0 233 36.1
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 4.5e-25 119.4 106 64.2
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 5.5e-23 112.5 158 43.7
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 1.0e-21 108.2 245 31.0
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 3.3e-20 103.2 76 67.1
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 1.7e-19 100.9 300 27.7
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.7e-19 99.8 235 32.8
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 1.7e-16 90.9 139 38.1
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 6.5e-16 89.0 66 62.1
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.1e-12 78.2 49 77.6
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 6.3e-11 72.4 57 57.9
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 2.0e-09 67.4 42 73.8


User provided reference genes

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