Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2709 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.7e-125 452.6 216 100.0
FAN27G2928 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.3e-109 399.8 204 95.6
FAN26G0893 Fragaria x ananassa HOM05D001216 ORTHO05D011815 5.5e-108 394.4 209 93.3
FAN04G1577 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.2e-107 393.3 209 92.8
FAN17G1526 Fragaria x ananassa HOM05D001216 ORTHO05D011815 2.0e-105 386.0 222 86.5
FAN01G1976 Fragaria x ananassa HOM05D001216 ORTHO05D011815 5.7e-105 384.4 204 93.1
FAN10G1306 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.7e-104 382.9 209 91.9
FAN22G2164 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.3e-101 373.2 209 90.0
FvH4_3g31250 Fragaria vesca HOM05D001216 ORTHO05D011815 1.9e-100 369.4 208 90.9
FAN18G4148 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.3e-96 356.7 284 68.3
FAN04G0702 Fragaria x ananassa HOM05D001216 ORTHO05D011815 8.8e-90 334.0 236 73.7
FAN05G0592 Fragaria x ananassa HOM05D001216 ORTHO05D011815 2.3e-77 292.7 154 94.2
FAN22G0603 Fragaria x ananassa HOM05D001216 ORTHO05D011815 6.6e-77 291.2 154 93.5
FAN03G2628 Fragaria x ananassa HOM05D001216 ORTHO05D011815 5.7e-73 278.1 180 82.2
FAN05G0311 Fragaria x ananassa HOM05D001216 ORTHO05D011815 9.8e-73 277.3 183 79.2
FAN17G2871 Fragaria x ananassa HOM05D007529 ORTHO05D011815 1.9e-68 263.1 141 92.9
FAN21G0567 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.5e-57 226.9 121 92.6
FAN26G2243 Fragaria x ananassa HOM05D000985 ORTHO05D000866 3.2e-55 219.2 168 72.6
FAN21G1093 Fragaria x ananassa HOM05D001216 ORTHO05D011815 4.6e-54 215.3 136 80.9
FAN17G0829 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.9e-52 209.9 154 72.7
FAN01G2876 Fragaria x ananassa HOM05D000985 ORTHO05D011815 1.1e-50 204.1 376 38.3
FAN15G3600 Fragaria x ananassa HOM05D001216 ORTHO05D011815 2.2e-40 169.9 79 97.5
FAN26G0156 Fragaria x ananassa HOM05D001216 ORTHO05D011815 8.4e-40 167.9 76 100.0
Manes.01G222100 Manihot esculenta HOM05D001216 ORTHO05D005688 5.3e-34 148.7 96 81.2
FvH4_2g26030 Fragaria vesca HOM05D001216 ORTHO05D005688 1.5e-33 147.1 122 68.9
FAN27G1041 Fragaria x ananassa HOM05D001216 ORTHO05D005688 1.5e-33 147.1 122 68.9
FAN24G0487 Fragaria x ananassa HOM05D001216 ORTHO05D005688 4.5e-33 145.6 126 66.7
RcHm_v2.0_Chr6g0294391 Rosa chinensis HOM05D001216 ORTHO05D005688 9.9e-33 144.4 122 68.0
FAN03G1594 Fragaria x ananassa HOM05D000985 ORTHO05D011815 1.3e-32 144.1 366 33.1
FAN21G3946 Fragaria x ananassa HOM05D001216 ORTHO05D011815 1.7e-32 143.7 116 71.6
Prupe.8G264600 Prunus persica HOM05D001216 ORTHO05D005688 6.4e-32 141.7 122 67.2
MD11G1306700 Malus domestica HOM05D001216 ORTHO05D005688 1.4e-31 140.6 122 66.4
MD03G1291500 Malus domestica HOM05D001216 ORTHO05D005688 5.4e-31 138.7 119 67.2
Cpa.g.sc151.24 Carica papaya HOM05D001216 ORTHO05D005688 2.7e-30 136.3 122 63.9
Sed0014889 Sechium edule HOM05D001216 ORTHO05D005688 6.0e-30 135.2 122 63.9
MELO3C017941.2 Cucumis melo HOM05D001216 ORTHO05D005688 7.9e-30 134.8 122 63.1
FAN15G2312 Fragaria x ananassa HOM05D001216 ORTHO05D005688 1.0e-29 134.4 144 58.3
Ciclev10018801m.g Citrus clementina HOM05D001216 ORTHO05D005688 1.3e-29 134.0 122 63.9
Potri.014G126700 Populus trichocarpa HOM05D001216 ORTHO05D005688 1.3e-29 134.0 122 63.9
CsaV3_4G000980 Cucumis sativus L. HOM05D001216 ORTHO05D005688 1.8e-29 133.7 122 63.1
Hma1.2p1_0494F.1_g165430 Hydrangea macrophylla HOM05D001216 ORTHO05D005688 1.8e-29 133.7 122 63.1
Cfa005876 Carpinus fangiana HOM05D001216 ORTHO05D005688 2.3e-29 133.3 122 63.1
Actinidia25817 Actinidia chinensis HOM05D001216 ORTHO05D005688 3.0e-29 132.9 122 63.1
PGR119G1482 Punica granatum HOM05D001216 ORTHO05D005688 3.9e-29 132.5 122 62.3
Sabra14G0094400 Salix brachista HOM05D001216 ORTHO05D005688 3.9e-29 132.5 122 63.1
Atru.chr5.1093 Acer truncatum HOM05D001216 ORTHO05D005688 5.1e-29 132.1 122 63.1
Dinv19670 Davidia involucrata HOM05D001216 ORTHO05D005688 5.1e-29 132.1 122 62.3
Glyma.03G216400 Glycine max HOM05D001216 ORTHO05D005688 5.1e-29 132.1 122 63.1
Glyma.19G212900 Glycine max HOM05D001216 ORTHO05D005688 5.1e-29 132.1 122 63.1
VMungo1383G0601 Vigna mungo HOM05D001216 ORTHO05D005688 5.1e-29 132.1 122 63.1
Phvul.001G209900 Phaseolus vulgaris HOM05D001216 ORTHO05D005688 6.7e-29 131.7 122 63.1
TWI14G0472 Tripterygium wilfordii HOM05D001216 ORTHO05D005688 6.7e-29 131.7 122 61.5
Ca_09190_v3 Cicer arietinum L. HOM05D001216 ORTHO05D005688 8.7e-29 131.3 122 62.3
Cc01_g21070 Coffea canephora HOM05D001216 ORTHO05D005688 1.1e-28 131.0 122 63.1
Haze_04975 Corylus avellana HOM05D001216 ORTHO05D005688 1.1e-28 131.0 122 62.3
ECA248G1090 Erigeron canadensis HOM05D001216 ORTHO05D005688 1.1e-28 131.0 122 61.5
HanXRQChr01g0000981 Helianthus annuus HOM05D001216 ORTHO05D005688 1.1e-28 131.0 122 61.5
Nn3g21560 Nelumbo nucifera HOM05D001216 ORTHO05D005688 1.5e-28 130.6 122 62.3
CDE09G0061 Ceratophyllum demersum HOM05D001216 ORTHO05D005688 1.9e-28 130.2 140 57.1
Medtr7g108940 Medicago truncatula HOM05D001216 ORTHO05D005688 1.9e-28 130.2 122 62.3
Actinidia21029 Actinidia chinensis HOM05D001216 ORTHO05D005688 2.5e-28 129.8 122 62.3
Lalb_Chr18g0046881 Lupinus albus HOM05D001216 ORTHO05D005688 2.5e-28 129.8 122 61.5
Sc05g0003610 Simmondsia chinensis HOM05D001216 ORTHO05D005688 2.5e-28 129.8 122 60.7
MSTRG.17397 Avicennia marina HOM05D001216 ORTHO05D005688 3.3e-28 129.4 122 62.3
CiPaw.07G111800 Carya illinoinensis HOM05D001216 ORTHO05D005688 3.3e-28 129.4 122 62.3
COL.COLO4_23312 Corchorus olitorius HOM05D001216 ORTHO05D005688 3.3e-28 129.4 122 63.1
THA.LOC104801287 Tarenaya hassleriana HOM05D001216 ORTHO05D005688 3.3e-28 129.4 122 60.7
Aa31LG5G1920 Aethionema arabicum HOM05D001216 ORTHO05D005688 4.3e-28 129.0 122 59.8
MBI19_g30015_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D005688 4.3e-28 129.0 122 61.5
Sp6g02150 Schrenkiella parvula HOM05D001216 ORTHO05D005688 4.3e-28 129.0 122 59.8
BcaB05g23611 Brassica carinata HOM05D001216 ORTHO05D005688 5.6e-28 128.6 122 59.8
DCAR_018318 Daucus carota HOM05D001216 ORTHO05D005688 5.6e-28 128.6 122 60.7
Lsat_1_v5_gn_9_5980 Lactuca sativa HOM05D001216 ORTHO05D005688 5.6e-28 128.6 122 61.5
Oeu011466.1 Olea europaea HOM05D001216 ORTHO05D005688 5.6e-28 128.6 122 61.5
AL6G50870 Arabidopsis lyrata HOM05D001216 ORTHO05D005688 7.4e-28 128.3 122 59.8
AT4G02260 Arabidopsis thaliana HOM05D001216 ORTHO05D005688 7.4e-28 128.3 122 59.8
Eucgr.H01087 Eucalyptus grandis HOM05D001216 ORTHO05D005688 7.4e-28 128.3 122 61.5
Thhalv10028413m.g Eutrema salsugineum HOM05D001216 ORTHO05D005688 7.4e-28 128.3 122 59.8
TPR.G9647 Trifolium pratense HOM05D001216 ORTHO05D005688 7.4e-28 128.3 122 61.5
Dinv33073 Davidia involucrata HOM05D001216 ORTHO05D005688 9.6e-28 127.9 122 61.5
Duzib211G0167 Durio zibethinus HOM05D001216 ORTHO05D005688 9.6e-28 127.9 122 62.3
Lalb_Chr15g0078431 Lupinus albus HOM05D001216 ORTHO05D005688 9.6e-28 127.9 122 60.7
Nn4g25744 Nelumbo nucifera HOM05D001216 ORTHO05D005688 9.6e-28 127.9 122 61.5
arahy.Tifrunner.gnm1.ann1.2L0PS7 Arachis hypogaea HOM05D001216 ORTHO05D005688 1.3e-27 127.5 122 60.7
BcaC03g16112 Brassica carinata HOM05D001216 ORTHO05D005688 1.3e-27 127.5 122 59.0
A02p24590 Brassica napus HOM05D001216 ORTHO05D005688 1.3e-27 127.5 122 59.0
C02p38830 Brassica napus HOM05D001216 ORTHO05D005688 1.3e-27 127.5 122 59.0
AUR62008703 Chenopodium quinoa HOM05D001216 ORTHO05D005688 1.3e-27 127.5 160 49.4
Lj1g0005208 Lotus japonicus HOM05D001216 ORTHO05D005688 1.3e-27 127.5 122 60.7
Carub.0006s3491 Capsella rubella HOM05D001216 ORTHO05D005688 1.6e-27 127.1 122 59.0
Thecc.01G304700 Theobroma cacao HOM05D001216 ORTHO05D005688 2.8e-27 126.3 122 61.5
BcaB01g02061 Brassica carinata HOM05D001216 ORTHO05D005688 3.6e-27 125.9 122 59.0
Psat3g020360 Pisum sativum HOM05D001216 ORTHO05D005688 4.8e-27 125.6 122 61.5
SalBow2G0728 Salvia bowleyana HOM05D001216 ORTHO05D005688 4.8e-27 125.6 122 61.5
SalBow7G2795 Salvia bowleyana HOM05D001216 ORTHO05D005688 4.8e-27 125.6 122 61.5
BcaC04g24051 Brassica carinata HOM05D001216 ORTHO05D005688 6.2e-27 125.2 122 59.0
C09p01790 Brassica napus HOM05D001216 ORTHO05D005688 6.2e-27 125.2 122 59.0
BolC9t53114H Brassica oleracea HOM05D001216 ORTHO05D005688 6.2e-27 125.2 122 59.0
QL12p027872 Quercus lobata HOM05D001216 ORTHO05D005688 6.2e-27 125.2 122 62.3
Ah.15g092990 Amaranthus hybridus HOM05D001216 ORTHO05D005688 8.1e-27 124.8 122 59.8
A09p01720 Brassica napus HOM05D001216 ORTHO05D005688 8.1e-27 124.8 122 58.2
BraA09t35827Z Brassica rapa HOM05D001216 ORTHO05D005688 8.1e-27 124.8 152 50.0
AUR62025529 Chenopodium quinoa HOM05D001216 ORTHO05D005688 8.1e-27 124.8 122 59.0
Gohir.D08G051800 Gossypium hirsutum HOM05D001216 ORTHO05D005688 8.1e-27 124.8 122 59.8
Gorai.004G051900 Gossypium raimondii HOM05D001216 ORTHO05D005688 8.1e-27 124.8 122 59.8
CSS0041875 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D005688 1.1e-26 124.4 122 60.7
ECA247G3137 Erigeron canadensis HOM05D001216 ORTHO05D005688 1.1e-26 124.4 122 58.2
BraA02t07450Z Brassica rapa HOM05D001216 ORTHO05D005688 1.4e-26 124.0 122 58.2
Gohir.A08G041800 Gossypium hirsutum HOM05D001216 ORTHO05D005688 1.4e-26 124.0 122 59.8
Duzib138G0177 Durio zibethinus HOM05D001216 ORTHO05D005688 1.8e-26 123.6 122 60.7
ATR0693G436 Amborella trichopoda HOM05D001216 ORTHO05D005688 2.4e-26 123.2 122 59.8
CAN.G862.66 Capsicum annuum HOM05D001216 ORTHO05D005688 2.4e-26 123.2 152 52.6
HanXRQChr15g0465121 Helianthus annuus HOM05D001216 ORTHO05D005688 2.4e-26 123.2 122 59.0
Solyc09g075390.4 Solanum lycopersicum HOM05D001216 ORTHO05D005688 2.4e-26 123.2 152 52.6
Solyc09g098580.3 Solanum lycopersicum HOM05D001216 ORTHO05D005688 2.4e-26 123.2 152 52.6
Sopen09g030160 Solanum pennellii HOM05D001216 ORTHO05D005688 2.4e-26 123.2 152 52.6
PGSC0003DMG400031817 Solanum tuberosum HOM05D001216 ORTHO05D005688 2.4e-26 123.2 152 52.6
Nitab4.5_0000116g0350 Nicotiana tabacum HOM05D001216 ORTHO05D005688 3.1e-26 122.9 152 52.0
Rhsim01G0287300 Rhododendron simsii HOM05D001216 ORTHO05D005688 3.1e-26 122.9 128 57.0
GSVIVG01028045001 Vitis vinifera HOM05D001216 ORTHO05D005688 3.1e-26 122.9 122 59.0
Aqoxy5G00793 Aquilegia oxysepala HOM05D001216 ORTHO05D005688 4.0e-26 122.5 122 59.0
Peaxi162Scf00001g03514 Petunia axillaris HOM05D001216 ORTHO05D005688 4.0e-26 122.5 152 52.0
vmacro15139 Vaccinium macrocarpon HOM05D001216 ORTHO05D005688 4.0e-26 122.5 122 60.7
Migut.D00133 Erythranthe guttata HOM05D001216 ORTHO05D005688 5.3e-26 122.1 124 62.1
Sopen09g036490 Solanum pennellii HOM05D001216 ORTHO05D005688 5.3e-26 122.1 152 52.0
CSS0031124 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D005688 6.9e-26 121.7 122 60.7
Gohir.A12G128700 Gossypium hirsutum HOM05D001216 ORTHO05D005688 6.9e-26 121.7 122 59.0
PSO832G4554 Papaver somniferum HOM05D001216 ORTHO05D005688 6.9e-26 121.7 122 58.2
Os03g0340900 Oryza sativa ssp. japonica HOM05D001216 ORTHO05D005688 9.0e-26 121.3 122 58.2
FAN15G2671 Fragaria x ananassa HOM05D000985 ORTHO05D011815 1.2e-25 120.9 100 69.0
Zm00001eb016330 Zea mays HOM05D001216 ORTHO05D005688 1.2e-25 120.9 122 58.2
EL10Ac7g17565 Beta vulgaris HOM05D001216 ORTHO05D005688 1.5e-25 120.6 122 57.4
Gohir.D12G132300 Gossypium hirsutum HOM05D001216 ORTHO05D005688 1.5e-25 120.6 122 60.7
Gorai.008G143400 Gossypium raimondii HOM05D001216 ORTHO05D005688 1.5e-25 120.6 122 60.7
ClCG10G011110 Citrullus lanatus HOM05D001216 ORTHO05D005688 2.0e-25 120.2 76 80.3
MBI01_g10023_MAGBIO Magnolia biondii HOM05D000758 ORTHO05D014849 3.4e-25 119.4 122 58.2
PSO210G0295 Papaver somniferum HOM05D001216 ORTHO05D005688 4.5e-25 119.0 122 57.4
MBI02_g24794_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D011815 5.5e-23 112.1 80 75.0
Nitab4.5_0005673g0020 Nicotiana tabacum HOM05D001216 ORTHO05D005688 7.1e-23 111.7 151 49.0
TAR362G1019 Trochodendron aralioides HOM05D001216 ORTHO05D005688 1.6e-22 110.5 76 76.3
Pp3c16_7020 Physcomitrium patens HOM05D001216 ORTHO05D005688 7.9e-22 108.2 122 51.6
HPP92_001318 Vanilla planifolia HOM05D001216 ORTHO05D005688 1.0e-21 107.8 122 54.1
Mapoly0053s0023 Marchantia polymorpha HOM05D001216 ORTHO05D005688 1.3e-21 107.5 122 53.3
AagrBONN_evm.TU.Sc2ySwM_117.2305 Anthoceros agrestis HOM05D001216 ORTHO05D005688 3.0e-21 106.3 122 50.8
AagrBONN_evm.TU.Sc2ySwM_117.2331 Anthoceros agrestis HOM05D001216 ORTHO05D005688 3.0e-21 106.3 122 50.8
SMO119G0141 Selaginella moellendorffii HOM05D001216 ORTHO05D005688 8.7e-21 104.8 122 51.6
Pp3c6_15190 Physcomitrium patens HOM05D001216 ORTHO05D005688 2.5e-20 103.2 125 51.2
SEGI_13969 Sequoiadendron giganteum HOM05D001216 ORTHO05D011815 1.3e-16 90.9 106 52.8
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.1e-15 87.8 122 46.7
MCO04G258 Micromonas commoda HOM05D001216 ORTHO05D005688 3.2e-15 86.3 128 44.5
SGA_v2.0_scaffold198G41133 Striga asiatica HOM05D001216 ORTHO05D005688 5.5e-15 85.5 121 47.9
CBR_g12157 Chara braunii HOM05D001216 ORTHO05D011815 2.1e-14 83.6 76 60.5
Lj1C22T13 Lonicera japonica HOM05D001216 ORTHO05D005688 4.6e-14 82.4 97 52.6
Nitab4.5_0001859g0010 Nicotiana tabacum HOM05D001216 ORTHO05D005688 2.1e-11 73.6 151 38.4
CDE02G3697 Ceratophyllum demersum HOM05D001216 ORTHO05D005688 1.8e-10 70.5 121 42.1
FAN23G3088 Fragaria x ananassa HOM05D000849 ORTHO05D001720 2.4e-10 70.1 35 94.3
FAN13G1906 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.6e-09 66.6 35 82.9
FAN17G0844 Fragaria x ananassa HOM05D007529 ORTHO05D007451 3.4e-09 66.2 50 70.0
Actinidia32192 Actinidia chinensis HOM05D001216 ORTHO05D003822 1.9e-07 60.5 96 40.6
Oeu026246.1 Olea europaea HOM05D001216 ORTHO05D003822 7.2e-07 58.5 131 33.6
ATR0598G350 Amborella trichopoda HOM05D001216 ORTHO05D003822 1.6e-06 57.4 117 35.9
Lalb_Chr04g0263551 Lupinus albus HOM05D001216 ORTHO05D003822 1.6e-06 57.4 117 35.9
Cc04_g01270 Coffea canephora HOM05D001216 ORTHO05D003822 2.1e-06 57.0 117 35.9
DCAR_022692 Daucus carota HOM05D001216 ORTHO05D003822 2.1e-06 57.0 117 35.9
EL10Ac7g16415 Beta vulgaris HOM05D001216 ORTHO05D003822 2.7e-06 56.6 117 35.0
CAN.G668.43 Capsicum annuum HOM05D001216 ORTHO05D003822 2.7e-06 56.6 117 35.9
vmacro15040 Vaccinium macrocarpon HOM05D001216 ORTHO05D003822 2.7e-06 56.6 118 36.4
MSTRG.9522 Avicennia marina HOM05D001216 ORTHO05D003822 3.6e-06 56.2 117 35.0
Actinidia21793 Actinidia chinensis HOM05D001216 ORTHO05D003822 4.6e-06 55.8 118 36.4
Medtr8g020880 Medicago truncatula HOM05D001216 ORTHO05D003822 4.6e-06 55.8 117 35.9
Nitab4.5_0007255g0010 Nicotiana tabacum HOM05D001216 ORTHO05D003822 6.1e-06 55.5 117 35.9
A05p35390 Brassica napus HOM05D001216 ORTHO05D003822 7.9e-06 55.1 209 25.4
BraA05t22349Z Brassica rapa HOM05D001216 ORTHO05D003822 7.9e-06 55.1 209 25.4
CDE05G2394 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 7.9e-06 55.1 117 35.9
Lalb_Chr25g0281501 Lupinus albus HOM05D001216 ORTHO05D003822 7.9e-06 55.1 117 35.0
Rhsim08G0239700 Rhododendron simsii HOM05D001216 ORTHO05D003822 7.9e-06 55.1 117 34.2
Solyc03g123370.3 Solanum lycopersicum HOM05D001216 ORTHO05D003822 7.9e-06 55.1 117 35.9
Sopen03g041150 Solanum pennellii HOM05D001216 ORTHO05D003822 7.9e-06 55.1 117 35.9
PGSC0003DMG400014030 Solanum tuberosum HOM05D001216 ORTHO05D003822 7.9e-06 55.1 117 35.9
VMungo0331G0428 Vigna mungo HOM05D001216 ORTHO05D003822 7.9e-06 55.1 117 35.9


User provided reference genes

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