Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2274 Fragaria x ananassa HOM05D007331 ORTHO05D009273 2.6e-52 208.4 102 100.0
FAN10G3896 Fragaria x ananassa HOM05D007331 ORTHO05D009273 2.6e-52 208.4 102 100.0
FvH4_7g32020 Fragaria vesca HOM05D007331 ORTHO05D009273 2.9e-51 204.9 102 97.1
FAN06G3260 Fragaria x ananassa HOM05D007331 ORTHO05D009273 2.9e-51 204.9 102 97.1
FAN01G2673 Fragaria x ananassa HOM05D007331 ORTHO05D009273 3.8e-51 204.5 102 96.1
RcHm_v2.0_Chr1g0381631 Rosa chinensis HOM05D007331 ORTHO05D009273 1.1e-50 203.0 102 96.1
Prupe.2G313600 Prunus persica HOM05D007331 ORTHO05D009273 8.8e-48 193.4 102 90.2
MD01G1223100 Malus domestica HOM05D007331 ORTHO05D009273 3.3e-47 191.4 102 89.2
Atru.chr12.2246 Acer truncatum HOM05D007331 ORTHO05D009273 9.1e-45 183.3 102 84.3
Cfa016463 Carpinus fangiana HOM05D007331 ORTHO05D009273 1.7e-43 179.1 102 80.4
Haze_00231 Corylus avellana HOM05D007331 ORTHO05D009273 2.9e-43 178.3 102 80.4
Gorai.008G267700 Gossypium raimondii HOM05D007331 ORTHO05D009273 3.8e-43 177.9 102 80.4
ClCG05G009050 Citrullus lanatus HOM05D007331 ORTHO05D009273 5.0e-43 177.6 102 83.3
GSVIVG01010322001 Vitis vinifera HOM05D007331 ORTHO05D009273 5.0e-43 177.6 102 81.4
Cpa.g.sc3.102 Carica papaya HOM05D007331 ORTHO05D009273 1.1e-42 176.4 102 80.4
Gohir.A12G248800 Gossypium hirsutum HOM05D007331 ORTHO05D009273 1.1e-42 176.4 102 79.4
Sed0023714 Sechium edule HOM05D007331 ORTHO05D009273 1.1e-42 176.4 102 83.3
CiPaw.05G198500 Carya illinoinensis HOM05D007331 ORTHO05D009273 1.9e-42 175.6 102 82.4
COL.COLO4_16795 Corchorus olitorius HOM05D007331 ORTHO05D009273 1.9e-42 175.6 102 79.4
MELO3C019371.2 Cucumis melo HOM05D000442 ORTHO05D007032 2.5e-42 175.3 102 81.4
CsaV3_3G019730 Cucumis sativus L. HOM05D007331 ORTHO05D009273 3.2e-42 174.9 102 81.4
Psat5g075920 Pisum sativum HOM05D007331 ORTHO05D009273 3.2e-42 174.9 102 81.4
Thecc.03G201300 Theobroma cacao HOM05D007331 ORTHO05D009273 3.2e-42 174.9 102 77.5
Medtr3g491820 Medicago truncatula HOM05D007331 ORTHO05D009273 4.2e-42 174.5 102 80.4
Eucgr.K00396 Eucalyptus grandis HOM05D007331 ORTHO05D009273 2.1e-41 172.2 102 78.4
PGR142G4299 Punica granatum HOM05D007331 ORTHO05D009273 3.6e-41 171.4 102 79.4
Manes.05G191300 Manihot esculenta HOM05D007331 ORTHO05D009273 4.7e-41 171.0 102 79.4
QL09p007955 Quercus lobata HOM05D007331 ORTHO05D009273 6.1e-41 170.6 101 79.2
Ca_16722_v3 Cicer arietinum L. HOM05D007331 ORTHO05D009273 1.8e-40 169.1 102 78.4
CANSAT21G1988 Cannabis sativa HOM05D007331 ORTHO05D009273 2.3e-40 168.7 102 77.5
Dinv35349 Davidia involucrata HOM05D007331 ORTHO05D009273 2.3e-40 168.7 98 81.6
Glyma.04G234000 Glycine max HOM05D007331 ORTHO05D009273 4.0e-40 167.9 102 76.5
CSS0016118 Camellia sinensis var. sinensis HOM05D007331 ORTHO05D009273 1.2e-39 166.4 98 78.6
Ciclev10022582m.g Citrus clementina HOM05D007331 ORTHO05D009273 1.2e-39 166.4 102 75.5
Lalb_Chr08g0240101 Lupinus albus HOM05D007331 ORTHO05D009273 1.5e-39 166.0 98 79.6
Sabra15G0008800 Salix brachista HOM05D007331 ORTHO05D009273 1.5e-39 166.0 98 78.6
Glyma.06G130800 Glycine max HOM05D007331 ORTHO05D009273 2.6e-39 165.2 102 75.5
Phvul.009G050900 Phaseolus vulgaris HOM05D007331 ORTHO05D009273 2.6e-39 165.2 102 74.5
MSTRG.8644 Avicennia marina HOM05D007331 ORTHO05D009273 3.3e-39 164.9 98 78.6
Potri.015G010700 Populus trichocarpa HOM05D007331 ORTHO05D009273 3.3e-39 164.9 98 79.6
BcaNung01223 Brassica carinata HOM05D007331 ORTHO05D009273 4.4e-39 164.5 102 75.5
VMungo1309G2222 Vigna mungo HOM05D007331 ORTHO05D009273 4.4e-39 164.5 102 75.5
Peaxi162Scf00740g00023 Petunia axillaris HOM05D007331 ORTHO05D009273 5.7e-39 164.1 98 78.6
Nn5g27567 Nelumbo nucifera HOM05D007331 ORTHO05D009273 7.5e-39 163.7 102 77.5
Duzib068G0233 Durio zibethinus HOM05D007331 ORTHO05D009273 9.7e-39 163.3 98 75.5
A06p35140 Brassica napus HOM05D007331 ORTHO05D009273 1.3e-38 162.9 102 74.5
C07p43430 Brassica napus HOM05D007331 ORTHO05D009273 1.3e-38 162.9 102 74.5
BolC7t44869H Brassica oleracea HOM05D007331 ORTHO05D009273 1.3e-38 162.9 102 74.5
BraA06t26434Z Brassica rapa HOM05D007331 ORTHO05D009273 1.3e-38 162.9 102 74.5
Thhalv10005048m.g Eutrema salsugineum HOM05D007331 ORTHO05D009273 1.3e-38 162.9 102 74.5
THA.LOC104798905 Tarenaya hassleriana HOM05D007331 ORTHO05D009273 1.3e-38 162.9 102 75.5
CDE04G0075 Ceratophyllum demersum HOM05D007331 ORTHO05D009273 1.7e-38 162.5 98 74.5
TWI39G0006 Tripterygium wilfordii HOM05D007331 ORTHO05D009273 2.8e-38 161.8 102 77.5
Sp2g23030 Schrenkiella parvula HOM05D007331 ORTHO05D009273 3.7e-38 161.4 102 73.5
Aa31LG11G3570 Aethionema arabicum HOM05D007331 ORTHO05D009273 4.8e-38 161.0 102 74.5
CAN.G481.32 Capsicum annuum HOM05D007331 ORTHO05D009273 8.2e-38 160.2 98 77.6
Nitab4.5_0005491g0010 Nicotiana tabacum HOM05D007331 ORTHO05D009273 8.2e-38 160.2 98 77.6
Solyc03g082970.4 Solanum lycopersicum HOM05D007331 ORTHO05D009273 1.8e-37 159.1 98 76.5
Sopen03g022780 Solanum pennellii HOM05D007331 ORTHO05D009273 1.8e-37 159.1 98 76.5
PGSC0003DMG400018546 Solanum tuberosum HOM05D007331 ORTHO05D009273 1.8e-37 159.1 98 76.5
PSO063G7177 Papaver somniferum HOM05D007331 ORTHO05D009273 4.1e-37 157.9 98 78.6
PSO170G4979 Papaver somniferum HOM05D007331 ORTHO05D009273 4.1e-37 157.9 98 78.6
AL6G35810 Arabidopsis lyrata HOM05D007331 ORTHO05D009273 7.0e-37 157.1 102 71.6
Carub.0006s2210 Capsella rubella HOM05D007331 ORTHO05D009273 7.0e-37 157.1 102 71.6
DCAR_014548 Daucus carota HOM05D007331 ORTHO05D009273 7.0e-37 157.1 98 72.4
CARHR189150 Cardamine hirsuta HOM05D007331 ORTHO05D009273 9.1e-37 156.8 102 70.6
Lj1g0000536 Lotus japonicus HOM05D007331 ORTHO05D009273 9.1e-37 156.8 100 73.0
AT5G24314 Arabidopsis thaliana HOM05D007331 ORTHO05D009273 1.6e-36 156.0 102 70.6
TPR.G33621 Trifolium pratense HOM05D007331 ORTHO05D009273 1.6e-36 156.0 98 71.4
Cc02_g01360 Coffea canephora HOM05D007331 ORTHO05D009273 2.0e-36 155.6 98 76.5
Migut.F00197 Erythranthe guttata HOM05D007331 ORTHO05D009273 1.3e-35 152.9 97 76.3
ATR0730G104 Amborella trichopoda HOM05D007331 ORTHO05D009273 3.8e-35 151.4 98 72.4
unitig_92.g28248 Utricularia gibba HOM05D007331 ORTHO05D009273 8.5e-35 150.2 98 67.3
AUR62035555 Chenopodium quinoa HOM05D007331 ORTHO05D009273 1.5e-34 149.4 101 75.2
AUR62006072 Chenopodium quinoa HOM05D007331 ORTHO05D009273 3.2e-34 148.3 101 74.3
Actinidia34232 Actinidia chinensis HOM05D007331 ORTHO05D009273 9.4e-34 146.7 91 76.9
COL.COLO4_06879 Corchorus olitorius HOM05D007331 ORTHO05D009273 9.4e-34 146.7 95 72.6
Ah.07g205440 Amaranthus hybridus HOM05D007331 ORTHO05D009273 1.6e-33 146.0 102 71.6
Aqoxy5G04308 Aquilegia oxysepala HOM05D007331 ORTHO05D009273 1.6e-33 146.0 102 69.6
SGA_v2.0_scaffold192G40527 Striga asiatica HOM05D007331 ORTHO05D009273 1.6e-33 146.0 98 69.4
arahy.Tifrunner.gnm1.ann1.US9W38 Arachis hypogaea HOM05D007331 ORTHO05D009273 8.8e-32 140.2 102 68.6
EL10Ac3g05257 Beta vulgaris HOM05D007331 ORTHO05D009273 1.5e-31 139.4 97 69.1
arahy.Tifrunner.gnm1.ann1.E13FL8 Arachis hypogaea HOM05D007331 ORTHO05D009273 2.0e-31 139.0 85 78.8
HPP92_020186 Vanilla planifolia HOM05D007331 ORTHO05D009273 3.4e-31 138.3 102 62.7
MBI06_g33738_MAGBIO Magnolia biondii HOM05D007331 ORTHO05D009273 1.1e-29 133.3 98 69.4
Hund11645 Selenicereus undatus HOM05D007331 ORTHO05D009273 2.7e-28 128.6 95 64.2
vmacro06396 Vaccinium macrocarpon HOM05D007331 ORTHO05D009273 7.7e-28 127.1 97 59.8
Nitab4.5_0000548g0030 Nicotiana tabacum HOM05D007331 ORTHO05D008325 3.8e-27 124.8 76 78.9
Lsat_1_v5_gn_2_136240 Lactuca sativa HOM05D007331 ORTHO05D009273 5.0e-27 124.4 89 65.2
Oeu023663.2 Olea europaea HOM05D007331 ORTHO05D009273 6.5e-27 124.0 98 63.3
ECA238G3436 Erigeron canadensis HOM05D007331 ORTHO05D009273 8.6e-27 123.6 89 65.2
HanXRQChr07g0206431 Helianthus annuus HOM05D007331 ORTHO05D009273 8.6e-27 123.6 89 64.0
Rhsim03G0210700 Rhododendron simsii HOM05D007331 ORTHO05D009273 7.2e-26 120.6 91 61.5
Lj3P902T29 Lonicera japonica HOM05D007331 ORTHO05D009273 8.0e-25 117.1 85 63.5
Os01g0705300 Oryza sativa ssp. japonica HOM05D007331 ORTHO05D009273 1.8e-24 115.9 98 56.1
Zm00001eb155420 Zea mays HOM05D007331 ORTHO05D009273 2.3e-24 115.5 98 55.1
Zm00001eb361120 Zea mays HOM05D007331 ORTHO05D009273 4.0e-24 114.8 98 54.1
Thecc.05G118900 Theobroma cacao HOM05D007331 ORTHO05D009273 1.6e-12 76.3 59 59.3
Actinidia08666 Actinidia chinensis HOM05D007331 ORTHO05D009273 9.5e-10 67.0 45 66.7
Mapoly0073s0014 Marchantia polymorpha HOM05D007331 ORTHO05D009273 1.4e-08 63.2 86 40.7
arahy.Tifrunner.gnm1.ann1.2NJ5KY Arachis hypogaea HOM05D007331 ORTHO05D009273 5.2e-08 61.2 59 55.9
A02p40720 Brassica napus HOM05D007331 ORTHO05D009273 1.2e-07 60.1 42 64.3
BraA02t09018Z Brassica rapa HOM05D007331 ORTHO05D009273 1.2e-07 60.1 42 64.3
Pp3c22_3530 Physcomitrium patens HOM05D007331 ORTHO05D009273 2.9e-06 55.5 83 43.4


User provided reference genes

Program Settings