Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G2103 Fragaria x ananassa HOM05D002460 ORTHO05D002716 5.3e-62 240.7 113 100.0
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 4.0e-25 118.2 74 75.7
RcHm_v2.0_Chr7g0192531 Rosa chinensis HOM05D002460 ORTHO05D002716 8.0e-18 94.0 81 63.0
Prupe.5G165200 Prunus persica HOM05D002460 ORTHO05D002716 7.5e-16 87.4 88 51.1
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 1.3e-15 86.7 41 90.2
FAN08G0993 Fragaria x ananassa HOM05D002460 ORTHO05D002716 6.4e-15 84.3 81 58.0
FAN04G0197 Fragaria x ananassa HOM05D002460 ORTHO05D002716 1.1e-14 83.6 81 58.0
FvH4_5g06330 Fragaria vesca HOM05D002460 ORTHO05D002716 5.4e-14 81.3 81 55.6
Haze_07591 Corylus avellana HOM05D002460 ORTHO05D002716 9.2e-14 80.5 84 52.4
THA.LOC104798963 Tarenaya hassleriana HOM05D002460 ORTHO05D002716 3.5e-13 78.6 88 47.7
MD14G1171100 Malus domestica HOM05D002460 ORTHO05D002716 6.0e-13 77.8 88 47.7
Rhsim12G0168100 Rhododendron simsii HOM05D002460 ORTHO05D002716 6.0e-13 77.8 84 48.8
CiPaw.11G019300 Carya illinoinensis HOM05D002460 ORTHO05D002716 7.8e-13 77.4 78 55.1
QL10p006862 Quercus lobata HOM05D002460 ORTHO05D002716 1.0e-12 77.0 81 53.1
Cfa019223 Carpinus fangiana HOM05D002460 ORTHO05D002716 1.7e-12 76.3 84 50.0
Dinv20597 Davidia involucrata HOM05D002460 ORTHO05D002716 1.7e-12 76.3 87 46.0
CSS0010908 Camellia sinensis var. sinensis HOM05D002460 ORTHO05D002716 6.6e-12 74.3 80 50.0
Lj4g0001346 Lotus japonicus HOM05D002460 ORTHO05D002716 6.6e-12 74.3 80 51.2
THA.LOC104821491 Tarenaya hassleriana HOM05D002460 ORTHO05D002716 1.9e-11 72.8 84 44.0
Lalb_Chr07g0182981 Lupinus albus HOM05D002460 ORTHO05D002716 4.3e-11 71.6 80 45.0
CiPaw.12G031300 Carya illinoinensis HOM05D002460 ORTHO05D002716 5.6e-11 71.2 80 46.2
Ca_14278_v3 Cicer arietinum L. HOM05D002460 ORTHO05D002716 5.6e-11 71.2 88 45.5
AL5G27640 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 7.3e-11 70.9 81 46.9
Lj5P130T40 Lonicera japonica HOM05D002460 ORTHO05D002716 7.3e-11 70.9 84 42.9
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 7.3e-11 70.9 84 46.4
Potri.015G084800 Populus trichocarpa HOM05D002460 ORTHO05D002716 7.3e-11 70.9 78 48.7
PGR044G2570 Punica granatum HOM05D002460 ORTHO05D002716 7.3e-11 70.9 76 48.7
Sabra15G0107800 Salix brachista HOM05D002460 ORTHO05D002716 7.3e-11 70.9 78 48.7
arahy.Tifrunner.gnm1.ann1.57MICD Arachis hypogaea HOM05D002460 ORTHO05D002716 9.5e-11 70.5 82 47.6
arahy.Tifrunner.gnm1.ann1.CJQU22 Arachis hypogaea HOM05D002460 ORTHO05D002716 9.5e-11 70.5 82 47.6
Manes.06G110600 Manihot esculenta HOM05D002460 ORTHO05D002716 9.5e-11 70.5 78 48.7
Lj4g0007925 Lotus japonicus HOM05D002460 ORTHO05D002716 1.2e-10 70.1 86 45.3
Sp5g13780 Schrenkiella parvula HOM05D002460 ORTHO05D002716 1.2e-10 70.1 81 43.2
CAN.G338.35 Capsicum annuum HOM05D002460 ORTHO05D002716 1.6e-10 69.7 86 45.3
Glyma.17G084400 Glycine max HOM05D002460 ORTHO05D002716 1.6e-10 69.7 84 47.6
AT3G48250 Arabidopsis thaliana HOM05D002460 ORTHO05D002716 2.1e-10 69.3 91 42.9
BcaB02g10665 Brassica carinata HOM05D002460 ORTHO05D002716 2.1e-10 69.3 80 45.0
arahy.Tifrunner.gnm1.ann1.X4ZK77 Arachis hypogaea HOM05D002460 ORTHO05D002716 2.8e-10 68.9 82 47.6
A06p27530 Brassica napus HOM05D002460 ORTHO05D002716 2.8e-10 68.9 90 44.4
Phvul.003G205300 Phaseolus vulgaris HOM05D002460 ORTHO05D002716 2.8e-10 68.9 84 47.6
TWI23G0764 Tripterygium wilfordii HOM05D002460 ORTHO05D002716 2.8e-10 68.9 87 46.0
Medtr4g104830 Medicago truncatula HOM05D002460 ORTHO05D002716 3.6e-10 68.6 88 43.2
Psat4g060800 Pisum sativum HOM05D002460 ORTHO05D002716 3.6e-10 68.6 81 44.4
TAR629G2887 Trochodendron aralioides HOM05D002460 ORTHO05D002716 3.6e-10 68.6 85 44.7
arahy.Tifrunner.gnm1.ann1.U08DU4 Arachis hypogaea HOM05D002460 ORTHO05D002716 6.2e-10 67.8 84 42.9
CARHR157010 Cardamine hirsuta HOM05D002460 ORTHO05D002716 6.2e-10 67.8 91 40.7
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 6.2e-10 67.8 84 45.2
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 6.2e-10 67.8 84 45.2
Thecc.03G026200 Theobroma cacao HOM05D002460 ORTHO05D002716 6.2e-10 67.8 78 44.9
Actinidia08034 Actinidia chinensis HOM05D002460 ORTHO05D002716 8.1e-10 67.4 77 48.1
Actinidia24599 Actinidia chinensis HOM05D002460 ORTHO05D002716 8.1e-10 67.4 77 48.1
Aa31LG4G16870 Aethionema arabicum HOM05D002460 ORTHO05D002716 8.1e-10 67.4 78 42.3
arahy.Tifrunner.gnm1.ann1.633QML Arachis hypogaea HOM05D002460 ORTHO05D002716 8.1e-10 67.4 84 42.9
VMungo1215G0531 Vigna mungo HOM05D002460 ORTHO05D002716 8.1e-10 67.4 84 46.4
VMungo1215G2415 Vigna mungo HOM05D002460 ORTHO05D002716 8.1e-10 67.4 84 46.4
CANSAT80G0235 Cannabis sativa HOM05D002460 ORTHO05D002716 1.1e-09 67.0 84 40.5
Eucgr.K02788 Eucalyptus grandis HOM05D002460 ORTHO05D002716 1.1e-09 67.0 79 43.0
Ciclev10019266m.g Citrus clementina HOM05D002460 ORTHO05D002716 1.4e-09 66.6 76 43.4
Glyma.17G124300 Glycine max HOM05D002460 ORTHO05D002716 1.4e-09 66.6 88 45.5
Carub.0005s1442 Capsella rubella HOM05D002460 ORTHO05D002716 1.8e-09 66.2 79 45.6
Ca_19417_v3 Cicer arietinum L. HOM05D002460 ORTHO05D002716 2.3e-09 65.9 82 45.1
COL.COLO4_36756 Corchorus olitorius HOM05D002460 ORTHO05D002716 2.3e-09 65.9 78 43.6
Medtr4g104800 Medicago truncatula HOM05D002460 ORTHO05D002716 3.1e-09 65.5 88 40.9
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 3.1e-09 65.5 84 44.0
TPR.G37490 Trifolium pratense HOM05D002460 ORTHO05D002716 3.1e-09 65.5 81 43.2
MSTRG.11497 Avicennia marina HOM05D002460 ORTHO05D002716 4.0e-09 65.1 84 42.9
BcaC01g02329 Brassica carinata HOM05D002460 ORTHO05D002716 4.0e-09 65.1 82 43.9
C03p66540 Brassica napus HOM05D002460 ORTHO05D002716 4.0e-09 65.1 82 43.9
BolC3t18924H Brassica oleracea HOM05D002460 ORTHO05D002716 4.0e-09 65.1 82 43.9
PGSC0003DMG400018187 Solanum tuberosum HOM05D002460 ORTHO05D002716 4.0e-09 65.1 84 42.9
TAR371G0019 Trochodendron aralioides HOM05D002460 ORTHO05D002716 4.0e-09 65.1 80 41.2
ClCG06G017440 Citrullus lanatus HOM05D002460 ORTHO05D002716 5.2e-09 64.7 80 47.5
Phvul.003G205400 Phaseolus vulgaris HOM05D002460 ORTHO05D002716 5.2e-09 64.7 79 46.8
Sopen03g031280 Solanum pennellii HOM05D002460 ORTHO05D002716 5.2e-09 64.7 84 42.9
BraA06t25692Z Brassica rapa HOM05D002460 ORTHO05D002716 6.8e-09 64.3 87 43.7
Atru.BG.194.p Acer truncatum HOM05D002460 ORTHO05D002716 1.2e-08 63.5 84 40.5
Oeu020152.1 Olea europaea HOM05D002460 ORTHO05D002716 1.2e-08 63.5 87 46.0
Duzib068G1032 Durio zibethinus HOM05D002460 ORTHO05D002716 1.5e-08 63.2 77 45.5
Thhalv10010209m.g Eutrema salsugineum HOM05D002460 ORTHO05D002716 1.5e-08 63.2 81 40.7
SGA_v2.0_scaffold25G10796 Striga asiatica HOM05D002460 ORTHO05D002716 1.5e-08 63.2 84 45.2
CsaV3_1G001090 Cucumis sativus L. HOM05D002460 ORTHO05D002716 2.0e-08 62.8 75 50.7
ECA247G0350 Erigeron canadensis HOM05D002460 ORTHO05D002716 2.0e-08 62.8 84 44.0
SalBow5G5090 Salvia bowleyana HOM05D002460 ORTHO05D002716 2.0e-08 62.8 86 43.0
SalBow5G5327 Salvia bowleyana HOM05D002460 ORTHO05D002716 2.0e-08 62.8 86 43.0
DCAR_021593 Daucus carota HOM05D002460 ORTHO05D002716 3.4e-08 62.0 85 40.0
Psat4g060760 Pisum sativum HOM05D002460 ORTHO05D002716 3.4e-08 62.0 83 44.6
A06p19400 Brassica napus HOM05D002460 ORTHO05D002716 4.4e-08 61.6 83 41.0
BraA06t25020Z Brassica rapa HOM05D002460 ORTHO05D002716 4.4e-08 61.6 83 41.0
TPR.G37535 Trifolium pratense HOM05D002460 ORTHO05D002716 4.4e-08 61.6 75 48.0
CANSAT80G0911 Cannabis sativa HOM05D002460 ORTHO05D002716 5.8e-08 61.2 87 40.2
Nn3g16689 Nelumbo nucifera HOM05D002460 ORTHO05D002716 5.8e-08 61.2 80 42.5
Sed0006469 Sechium edule HOM05D002460 ORTHO05D002716 5.8e-08 61.2 80 45.0
BcaB01g00827 Brassica carinata HOM05D002460 ORTHO05D002716 7.5e-08 60.8 79 40.5
BcaC07g39314 Brassica carinata HOM05D002460 ORTHO05D002716 7.5e-08 60.8 83 39.8
C08p23290 Brassica napus HOM05D002460 ORTHO05D002716 7.5e-08 60.8 83 39.8
BolC8t49960H Brassica oleracea HOM05D002460 ORTHO05D002716 7.5e-08 60.8 83 39.8
Medtr4g104790 Medicago truncatula HOM05D002460 ORTHO05D002716 9.9e-08 60.5 82 42.7
MELO3C026258.2 Cucumis melo HOM05D002460 ORTHO05D002716 1.3e-07 60.1 75 49.3
Lsat_1_v5_gn_1_27740 Lactuca sativa HOM05D002460 ORTHO05D002716 1.3e-07 60.1 67 44.8
HanXRQChr02g0035821 Helianthus annuus HOM05D002460 ORTHO05D002716 2.9e-07 58.9 89 40.4
Migut.O00161 Erythranthe guttata HOM05D002460 ORTHO05D002716 3.7e-07 58.5 84 40.5
Gorai.007G046800 Gossypium raimondii HOM05D002460 ORTHO05D002716 6.4e-07 57.8 67 43.3
MBI16_g36318_MAGBIO Magnolia biondii HOM05D002460 ORTHO05D002716 6.4e-07 57.8 88 35.2
Gohir.D11G043400 Gossypium hirsutum HOM05D002460 ORTHO05D002716 1.1e-06 57.0 67 40.3
Os01g0970900 Oryza sativa ssp. japonica HOM05D002460 ORTHO05D002716 1.1e-06 57.0 92 35.9
HPP92_004605 Vanilla planifolia HOM05D002460 ORTHO05D002716 1.4e-06 56.6 78 39.7
Gohir.A11G040200 Gossypium hirsutum HOM05D002460 ORTHO05D002716 4.1e-06 55.1 67 40.3
Medtr5g092040 Medicago truncatula HOM05D002460 ORTHO05D002716 9.2e-06 53.9 82 42.7


User provided reference genes

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