Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1968 Fragaria x ananassa HOM05D006791 ORTHO05D008221 1.6e-180 636.0 315 100.0
FvH4_7g19860 Fragaria vesca HOM05D006791 ORTHO05D008221 2.1e-132 476.1 281 84.7
FAN06G1214 Fragaria x ananassa HOM05D006791 ORTHO05D008221 2.3e-131 472.6 271 86.3
FAN03G2469 Fragaria x ananassa HOM05D006791 ORTHO05D008221 4.0e-131 471.9 281 84.0
FAN01G2861 Fragaria x ananassa HOM05D002197 ORTHO05D008221 1.1e-128 463.8 278 84.2
RcHm_v2.0_Chr1g0363851 Rosa chinensis HOM05D006791 ORTHO05D008221 6.8e-123 444.5 281 79.7
MD07G1176900 Malus domestica HOM05D006791 ORTHO05D008221 2.3e-107 392.9 271 72.7
Prupe.2G215700 Prunus persica HOM05D006791 ORTHO05D008221 1.2e-103 380.6 270 71.9
Manes.07G103500 Manihot esculenta HOM05D006791 ORTHO05D008221 7.3e-101 371.3 276 67.8
CiPaw.01G274700 Carya illinoinensis HOM05D006791 ORTHO05D008221 8.0e-100 367.9 281 66.5
Dinv31358 Davidia involucrata HOM05D006791 ORTHO05D008221 5.2e-99 365.2 280 66.1
CSS0049359 Camellia sinensis var. sinensis HOM05D006791 ORTHO05D008221 1.2e-98 364.0 281 65.5
GSVIVG01016310001 Vitis vinifera HOM05D006791 ORTHO05D008221 2.6e-98 362.8 281 64.8
Potri.008G042000 Populus trichocarpa HOM05D006791 ORTHO05D008221 5.8e-98 361.7 281 66.5
Actinidia03042 Actinidia chinensis HOM05D006791 ORTHO05D008221 9.8e-98 360.9 286 64.3
Thecc.10G070300 Theobroma cacao HOM05D006791 ORTHO05D008221 1.7e-97 360.1 271 66.8
CANSAT56G4374 Cannabis sativa HOM05D006791 ORTHO05D008221 4.9e-97 358.6 280 65.4
Haze_16919 Corylus avellana HOM05D006791 ORTHO05D008221 5.4e-96 355.1 301 61.8
CSS0037701 Camellia sinensis var. sinensis HOM05D006791 ORTHO05D008221 9.2e-96 354.4 281 65.1
Duzib106G0039 Durio zibethinus HOM05D006791 ORTHO05D008221 2.7e-95 352.8 281 65.1
Sabra08G0028900 Salix brachista HOM05D006791 ORTHO05D008221 2.7e-95 352.8 273 66.3
Cpa.g.sc466.9 Carica papaya HOM05D006791 ORTHO05D008221 2.3e-94 349.7 275 64.7
Gohir.A06G178100 Gossypium hirsutum HOM05D006791 ORTHO05D008221 2.3e-94 349.7 276 64.9
Gohir.D06G176900 Gossypium hirsutum HOM05D006791 ORTHO05D008221 2.3e-94 349.7 266 66.5
QL08p056563 Quercus lobata HOM05D006791 ORTHO05D008221 2.3e-94 349.7 281 65.1
Gorai.010G204900 Gossypium raimondii HOM05D006791 ORTHO05D008221 3.0e-94 349.4 276 64.9
PGR142G3028 Punica granatum HOM05D006791 ORTHO05D008221 3.0e-94 349.4 277 64.6
Cc02_g11450 Coffea canephora HOM05D006791 ORTHO05D008221 1.5e-93 347.1 295 59.3
Oeu033855.1 Olea europaea HOM05D006791 ORTHO05D008221 2.5e-93 346.3 281 62.3
Ciclev10033672m.g Citrus clementina HOM05D006791 ORTHO05D008221 4.3e-93 345.5 281 65.1
THA.LOC104802594 Tarenaya hassleriana HOM05D006791 ORTHO05D008221 2.1e-92 343.2 271 63.1
Medtr1g095580 Medicago truncatula HOM05D006791 ORTHO05D008221 8.1e-92 341.3 281 63.0
ClCG09G020610 Citrullus lanatus HOM05D006791 ORTHO05D008221 4.0e-91 339.0 280 63.2
Lalb_Chr06g0162211 Lupinus albus HOM05D006791 ORTHO05D008221 5.2e-91 338.6 281 62.6
Lj8A97G46 Lonicera japonica HOM05D006791 ORTHO05D008221 6.8e-91 338.2 295 61.0
Solyc02g062520.3 Solanum lycopersicum HOM05D006791 ORTHO05D008221 6.8e-91 338.2 281 60.9
arahy.Tifrunner.gnm1.ann1.86UM3X Arachis hypogaea HOM05D006791 ORTHO05D008221 8.9e-91 337.8 281 62.6
Sopen02g013520 Solanum pennellii HOM05D006791 ORTHO05D008221 8.9e-91 337.8 281 61.2
Ca_10581_v3 Cicer arietinum L. HOM05D006791 ORTHO05D008221 1.2e-90 337.4 281 61.9
Peaxi162Scf00108g00912 Petunia axillaris HOM05D006791 ORTHO05D008221 1.2e-90 337.4 278 61.5
arahy.Tifrunner.gnm1.ann1.7LH3TR Arachis hypogaea HOM05D002197 ORTHO05D008221 2.0e-90 336.7 281 62.6
Eucgr.G02814 Eucalyptus grandis HOM05D006791 ORTHO05D008221 2.6e-90 336.3 270 62.2
TPR.G1805 Trifolium pratense HOM05D006791 ORTHO05D008221 7.5e-90 334.7 280 62.1
CsaV3_5G025780 Cucumis sativus L. HOM05D006791 ORTHO05D008221 9.9e-90 334.3 281 62.6
Migut.F01766 Erythranthe guttata HOM05D006791 ORTHO05D008221 1.3e-89 334.0 281 61.2
MELO3C002896.2 Cucumis melo HOM05D006791 ORTHO05D008221 1.7e-89 333.6 281 62.6
Phvul.007G093000 Phaseolus vulgaris HOM05D006791 ORTHO05D008221 1.7e-89 333.6 285 61.1
Psat6g185200 Pisum sativum HOM05D006791 ORTHO05D008221 1.7e-89 333.6 271 62.7
Thhalv10010446m.g Eutrema salsugineum HOM05D006791 ORTHO05D008221 2.2e-89 333.2 271 62.7
DCAR_019128 Daucus carota HOM05D006791 ORTHO05D008221 6.4e-89 331.6 275 60.4
Lj5g0025337 Lotus japonicus HOM05D006791 ORTHO05D008221 8.3e-89 331.3 281 61.6
VMungo0720G1069 Vigna mungo HOM05D006791 ORTHO05D008221 8.3e-89 331.3 271 62.0
Nn2g10715 Nelumbo nucifera HOM05D006791 ORTHO05D008221 1.4e-88 330.5 279 61.3
Glyma.20G178400 Glycine max HOM05D006791 ORTHO05D008221 1.9e-88 330.1 281 59.8
AL5G32850 Arabidopsis lyrata HOM05D006791 ORTHO05D008221 3.2e-88 329.3 274 62.8
Aa31LG10G7360 Aethionema arabicum HOM05D006791 ORTHO05D008221 7.1e-88 328.2 271 62.4
CAN.G131.1 Capsicum annuum HOM05D006791 ORTHO05D008221 2.1e-87 326.6 281 60.1
ECA233G0118 Erigeron canadensis HOM05D000058 ORTHO05D008221 4.6e-87 325.5 275 60.4
MBI14_g40667_MAGBIO Magnolia biondii HOM05D006791 ORTHO05D008221 4.6e-87 325.5 285 60.7
SalBow3G2210 Salvia bowleyana HOM05D006791 ORTHO05D008221 4.6e-87 325.5 300 57.3
HanXRQChr08g0219631 Helianthus annuus HOM05D006791 ORTHO05D008221 1.9e-85 320.1 271 59.8
Lsat_1_v5_gn_8_20021 Lactuca sativa HOM05D006791 ORTHO05D008221 9.5e-85 317.8 289 58.8
SGA_v2.0_scaffold341G49357 Striga asiatica HOM05D006791 ORTHO05D008221 1.6e-84 317.0 289 58.8
Aqoxy7G02243 Aquilegia oxysepala HOM05D006791 ORTHO05D008221 2.1e-84 316.6 285 57.9
PSO339G2849 Papaver somniferum HOM05D006791 ORTHO05D008221 2.8e-84 316.2 281 58.7
PSO384G4004 Papaver somniferum HOM05D006791 ORTHO05D008221 6.2e-84 315.1 281 59.4
EL10Ac2g03590 Beta vulgaris HOM05D006791 ORTHO05D008221 1.4e-83 313.9 313 55.3
TWI15G0354 Tripterygium wilfordii HOM05D006791 ORTHO05D008221 1.2e-82 310.8 281 59.1
C07p46860 Brassica napus HOM05D006791 ORTHO05D008221 4.4e-82 308.9 285 58.9
Atru.chr12.724 Acer truncatum HOM05D006791 ORTHO05D008221 7.6e-82 308.1 258 64.0
Sc20g0001960 Simmondsia chinensis HOM05D006791 ORTHO05D008221 1.3e-81 307.4 251 61.4
MSTRG.371 Avicennia marina HOM05D006791 ORTHO05D008221 6.4e-81 305.1 285 57.5
Nitab4.5_0004081g0030 Nicotiana tabacum HOM05D006791 ORTHO05D008221 5.4e-80 302.0 280 56.4
CDE09G0276 Ceratophyllum demersum HOM05D006791 ORTHO05D008221 2.1e-79 300.1 286 55.2
Nitab4.5_0000233g0130 Nicotiana tabacum HOM05D006791 ORTHO05D008221 2.1e-79 300.1 281 56.2
Sp5g10000 Schrenkiella parvula HOM05D006791 ORTHO05D008221 2.1e-79 300.1 248 63.3
AUR62027952 Chenopodium quinoa HOM05D006791 ORTHO05D008221 3.5e-79 299.3 274 57.3
BolC7t45202H Brassica oleracea HOM05D006791 ORTHO05D008221 1.0e-78 297.7 303 55.4
BraA03t13977Z Brassica rapa HOM05D006791 ORTHO05D008221 3.9e-78 295.8 296 56.4
A03p48770 Brassica napus HOM05D006791 ORTHO05D008221 1.5e-77 293.9 275 58.9
ATR0759G009 Amborella trichopoda HOM05D006791 ORTHO05D008221 4.7e-76 288.9 269 57.2
unitig_747.g21478 Utricularia gibba HOM05D006791 ORTHO05D008221 4.7e-76 288.9 281 55.5
AT3G52260 Arabidopsis thaliana HOM05D006791 ORTHO05D008221 6.9e-75 285.0 245 61.2
TAR633G1431 Trochodendron aralioides HOM05D006791 ORTHO05D008221 1.9e-72 276.9 224 63.4
Zm00001eb013230 Zea mays HOM05D006791 ORTHO05D008221 2.4e-72 276.6 274 56.2
HPP92_001044 Vanilla planifolia HOM05D006791 ORTHO05D008221 2.7e-71 273.1 263 54.0
CARHR162020 Cardamine hirsuta HOM05D006791 ORTHO05D008221 2.6e-66 256.5 245 57.1
Sed0012525 Sechium edule HOM05D006791 ORTHO05D008221 2.9e-65 253.1 286 50.3
Carub.0005s1862 Capsella rubella HOM05D006791 ORTHO05D008221 2.4e-64 250.0 229 58.1
AagrBONN_evm.TU.Sc2ySwM_344.689 Anthoceros agrestis HOM05D006791 ORTHO05D008221 1.0e-62 244.6 286 49.3
Pp3c20_1270 Physcomitrium patens HOM05D006791 ORTHO05D008221 1.8e-62 243.8 269 52.8
Mapoly0002s0246 Marchantia polymorpha HOM05D006791 ORTHO05D008221 4.0e-59 232.6 269 49.4
Hma1.2p1_0063F.1_g034360 Hydrangea macrophylla HOM05D006791 ORTHO05D008221 5.3e-59 232.3 155 72.9
SMO347G0025 Selaginella moellendorffii HOM05D006791 ORTHO05D008221 7.6e-58 228.4 283 44.9
RcHm_v2.0_Chr5g0046841 Rosa chinensis HOM05D006791 ORTHO05D008221 2.4e-56 223.4 177 65.5
Hund22514 Selenicereus undatus HOM05D006791 ORTHO05D008221 4.9e-49 199.1 222 50.0
COL.COLO4_23713 Corchorus olitorius HOM05D006791 ORTHO05D008221 8.4e-49 198.4 127 74.0
PGSC0003DMG401015497 Solanum tuberosum HOM05D006791 ORTHO05D008221 2.5e-45 186.8 126 70.6
RcHm_v2.0_Chr2g0110391 Rosa chinensis HOM05D006791 ORTHO05D008221 3.7e-44 183.0 181 55.8
Rhsim03G0124600 Rhododendron simsii HOM05D006791 ORTHO05D008221 5.3e-43 179.1 128 67.2
vmacro07081 Vaccinium macrocarpon HOM05D006791 ORTHO05D008221 2.3e-38 163.7 176 51.7
AUR62020760 Chenopodium quinoa HOM05D006791 ORTHO05D008221 4.1e-35 152.9 140 57.1
RcHm_v2.0_Chr2g0104231 Rosa chinensis HOM05D006791 ORTHO05D008221 6.9e-35 152.1 120 66.7
Ah.10g032870 Amaranthus hybridus HOM05D006791 ORTHO05D008221 5.7e-29 132.5 88 70.5
CDE09G1017 Ceratophyllum demersum HOM05D006791 ORTHO05D008221 5.3e-27 125.9 117 53.0
Os03g0288500 Oryza sativa ssp. japonica HOM05D006791 ORTHO05D008221 5.9e-26 122.5 93 66.7
SEGI_28811 Sequoiadendron giganteum HOM05D006791 ORTHO05D008221 8.5e-25 118.6 96 56.2
Cre16.g689100 Chlamydomonas reinhardtii HOM05D006791 ORTHO05D008221 2.1e-23 114.0 431 26.7
COL.COLO4_23714 Corchorus olitorius HOM05D006791 ORTHO05D008221 5.2e-22 109.4 110 56.4
SEGI_03069 Sequoiadendron giganteum HOM05D006791 ORTHO05D008221 5.7e-21 105.9 107 51.4
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 2.8e-12 77.0 229 28.8
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 1.8e-11 74.3 232 27.2
Zm00001eb364040 Zea mays HOM05D006791 ORTHO05D008221 7.0e-11 72.4 60 60.0
CARHR069580 Cardamine hirsuta HOM05D007020 ORTHO05D008935 1.6e-10 71.2 304 25.0
Zm00001eb333930 Zea mays HOM05D006791 ORTHO05D008221 4.5e-10 69.7 60 58.3
AL8G25400 Arabidopsis lyrata HOM05D005705 ORTHO05D007152 2.9e-09 67.0 268 25.7
AT5G51140 Arabidopsis thaliana HOM05D005705 ORTHO05D007152 5.0e-09 66.2 269 25.7
BcaC01g06097 Brassica carinata HOM05D005705 ORTHO05D007152 6.5e-09 65.9 269 26.4
BolC3t14305H Brassica oleracea HOM05D005705 ORTHO05D007152 6.5e-09 65.9 268 26.1
Carub.0002s2293 Capsella rubella HOM05D007020 ORTHO05D008935 8.5e-09 65.5 264 25.8
THA.LOC104811568 Tarenaya hassleriana HOM05D005705 ORTHO05D007152 8.5e-09 65.5 263 25.5
Aa31LG3G7650 Aethionema arabicum HOM05D005705 ORTHO05D007152 1.1e-08 65.1 275 27.3
C02p20570 Brassica napus HOM05D005705 ORTHO05D007152 1.1e-08 65.1 265 24.9
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 1.1e-08 65.1 271 24.4
Thhalv10013761m.g Eutrema salsugineum HOM05D005705 ORTHO05D007152 1.1e-08 65.1 269 26.0
Cc10_g01170 Coffea canephora HOM05D007020 ORTHO05D008935 1.5e-08 64.7 277 26.0
Sp6g13350 Schrenkiella parvula HOM05D005705 ORTHO05D007152 1.9e-08 64.3 269 26.4
BcaC08g47097 Brassica carinata HOM05D007020 ORTHO05D008935 2.5e-08 63.9 304 24.0
BraA03t10919Z Brassica rapa HOM05D005705 ORTHO05D007152 2.5e-08 63.9 270 25.9
Ah.11g040270 Amaranthus hybridus HOM05D007020 ORTHO05D008935 3.2e-08 63.5 240 25.4
C03p19170 Brassica napus HOM05D005705 ORTHO05D007152 3.2e-08 63.5 238 26.1
BolC2t08194H Brassica oleracea HOM05D005705 ORTHO05D007152 3.2e-08 63.5 264 25.0
CARHR256910 Cardamine hirsuta HOM05D005705 ORTHO05D007152 3.2e-08 63.5 269 26.0
AT1G76050 Arabidopsis thaliana HOM05D007020 ORTHO05D008935 4.2e-08 63.2 280 24.6
Carub.0008s1118 Capsella rubella HOM05D005705 ORTHO05D007152 5.5e-08 62.8 269 25.3
BcaC01g06077 Brassica carinata HOM05D005705 ORTHO05D007152 7.2e-08 62.4 269 25.7
A02p12470 Brassica napus HOM05D005705 ORTHO05D007152 7.2e-08 62.4 264 25.4
BraA02t06310Z Brassica rapa HOM05D005705 ORTHO05D007152 7.2e-08 62.4 264 25.4
CDE02G2299 Ceratophyllum demersum HOM05D000059 ORTHO05D008935 7.2e-08 62.4 241 27.0
PSO017G1135 Papaver somniferum HOM05D005705 ORTHO05D007152 9.4e-08 62.0 258 24.4
PSO478G3581 Papaver somniferum HOM05D005705 ORTHO05D007152 9.4e-08 62.0 258 24.4
Thhalv10018588m.g Eutrema salsugineum HOM05D007020 ORTHO05D008935 1.2e-07 61.6 305 23.6
EL10Ac1g02092 Beta vulgaris HOM05D007020 ORTHO05D008935 1.6e-07 61.2 273 25.3
Pp3c21_5880 Physcomitrium patens HOM05D007020 ORTHO05D008935 1.6e-07 61.2 288 22.9
BcaC03g14622 Brassica carinata HOM05D005705 ORTHO05D007152 2.1e-07 60.8 234 25.6
AL2G36070 Arabidopsis lyrata HOM05D007020 ORTHO05D008935 2.7e-07 60.5 186 27.4
DCAR_026236 Daucus carota HOM05D005705 ORTHO05D007152 2.7e-07 60.5 255 25.5
HanXRQChr05g0146601 Helianthus annuus HOM05D007020 ORTHO05D008935 2.7e-07 60.5 281 24.9
BcaC08g47303 Brassica carinata HOM05D007020 ORTHO05D008935 3.6e-07 60.1 309 24.6
AUR62013887 Chenopodium quinoa HOM05D007020 ORTHO05D008935 3.6e-07 60.1 239 25.5
AUR62036707 Chenopodium quinoa HOM05D007020 ORTHO05D008935 3.6e-07 60.1 290 25.5
A03p16280 Brassica napus HOM05D005705 ORTHO05D007152 6.1e-07 59.3 269 25.3
Medtr3g114540 Medicago truncatula HOM05D007020 ORTHO05D008935 8.0e-07 58.9 242 25.2
ATR0661G229 Amborella trichopoda HOM05D007020 ORTHO05D008935 1.0e-06 58.5 271 23.6
BolC6t40035H Brassica oleracea HOM05D007020 ORTHO05D008935 1.0e-06 58.5 305 24.3
Migut.D01284 Erythranthe guttata HOM05D005705 ORTHO05D007152 1.0e-06 58.5 278 23.4
C06p49960 Brassica napus HOM05D007020 ORTHO05D008935 1.4e-06 58.2 317 24.3
SGA_v2.0_scaffold96G28944 Striga asiatica HOM05D007020 ORTHO05D008935 1.4e-06 58.2 285 27.0
Aa31LG4G6160 Aethionema arabicum HOM05D000059 ORTHO05D000128 1.8e-06 57.8 306 23.9
A07p41540 Brassica napus HOM05D007020 ORTHO05D008935 1.8e-06 57.8 182 26.9
BraA07t31686Z Brassica rapa HOM05D007020 ORTHO05D008935 1.8e-06 57.8 182 26.9
Nitab4.5_0001332g0070 Nicotiana tabacum HOM05D005705 ORTHO05D007152 1.8e-06 57.8 266 24.4
VMungo1309G1583 Vigna mungo HOM05D007020 ORTHO05D008935 1.8e-06 57.8 244 24.6
Cpa.g.sc26.268 Carica papaya HOM05D007020 ORTHO05D008935 2.3e-06 57.4 240 24.6
Manes.06G123000 Manihot esculenta HOM05D005705 ORTHO05D007152 2.3e-06 57.4 292 25.7
Nn4g22220 Nelumbo nucifera HOM05D005705 ORTHO05D007152 2.3e-06 57.4 263 24.7
Phvul.009G019500 Phaseolus vulgaris HOM05D007020 ORTHO05D008935 2.3e-06 57.4 265 23.4
Sabra15G0121700 Salix brachista HOM05D005705 ORTHO05D007152 2.3e-06 57.4 309 23.6
Sed0026116 Sechium edule HOM05D007020 ORTHO05D008935 2.3e-06 57.4 241 24.9
QL02p012883 Quercus lobata HOM05D007020 ORTHO05D008935 3.0e-06 57.0 270 25.2
THA.LOC104809629 Tarenaya hassleriana HOM05D007020 ORTHO05D008935 3.0e-06 57.0 278 23.0
Aqoxy6G02012 Aquilegia oxysepala HOM05D007020 ORTHO05D008935 4.0e-06 56.6 301 23.9
PSO170G4315 Papaver somniferum HOM05D007020 ORTHO05D008935 4.0e-06 56.6 300 22.3
Peaxi162Scf00516g00214 Petunia axillaris HOM05D005705 ORTHO05D007152 4.0e-06 56.6 266 24.1
Sc26g0004460 Simmondsia chinensis HOM05D007020 ORTHO05D008935 5.2e-06 56.2 233 23.2
Glyma.06G167100 Glycine max HOM05D005705 ORTHO05D007152 6.8e-06 55.8 258 26.0
TWI36G0910 Tripterygium wilfordii HOM05D007020 ORTHO05D008935 6.8e-06 55.8 239 24.7
GSVIVG01008591001 Vitis vinifera HOM05D005705 ORTHO05D007152 6.8e-06 55.8 261 24.1
GSVIVG01008746001 Vitis vinifera HOM05D007020 ORTHO05D008935 6.8e-06 55.8 274 22.6
Aqoxy3G01676 Aquilegia oxysepala HOM05D005705 ORTHO05D007152 8.8e-06 55.5 260 24.2
Mapoly0190s0007 Marchantia polymorpha HOM05D005705 ORTHO05D007152 8.8e-06 55.5 270 25.6
Medtr3g098940 Medicago truncatula HOM05D005705 ORTHO05D007152 8.8e-06 55.5 258 24.8
Nitab4.5_0003383g0010 Nicotiana tabacum HOM05D005705 ORTHO05D007152 8.8e-06 55.5 256 23.8


User provided reference genes

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