Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.3e-193 677.6 353 100.0
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.3e-193 677.6 353 100.0
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.7e-191 672.5 353 99.2
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.8e-191 671.4 353 98.9
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.6e-189 664.8 353 98.0
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.7e-187 657.5 370 94.1
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 8.8e-180 633.6 353 94.3
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 7.0e-169 597.4 350 88.6
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 1.2e-168 596.7 343 89.8
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 1.2e-163 580.1 350 85.4
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 7.7e-160 567.4 347 82.7
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 7.3e-158 560.8 336 83.9
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.1e-157 559.3 343 82.8
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.1e-157 559.3 343 82.8
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.8e-157 558.9 354 81.6
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.8e-157 558.9 324 86.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 4.7e-157 558.1 343 82.5
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 4.7e-157 558.1 343 82.5
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 4.7e-157 558.1 350 81.4
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 6.1e-157 557.8 349 82.2
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 8.0e-157 557.4 343 82.5
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.0e-156 557.0 354 80.8
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.8e-156 556.2 338 82.2
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 2.3e-156 555.8 335 83.3
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 2.3e-156 555.8 347 81.0
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 2.3e-156 555.8 347 81.0
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 4.0e-156 555.1 349 81.7
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 5.2e-156 554.7 347 81.0
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.8e-156 554.3 350 81.1
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 6.8e-156 554.3 332 83.4
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 8.9e-156 553.9 331 84.0
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.5e-155 553.1 347 81.0
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.5e-155 553.1 337 82.5
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.5e-155 553.1 350 81.1
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 2.6e-155 552.4 355 79.2
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 3.4e-155 552.0 334 84.1
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 4.4e-155 551.6 326 85.0
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 5.7e-155 551.2 333 82.6
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 5.7e-155 551.2 347 81.3
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 5.7e-155 551.2 350 81.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.7e-155 551.2 350 80.0
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 7.5e-155 550.8 347 80.1
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 7.5e-155 550.8 356 80.1
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.3e-154 550.1 347 80.1
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.3e-154 550.1 328 83.2
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 1.3e-154 550.1 331 82.2
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.3e-154 550.1 347 79.8
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.2e-154 549.3 345 81.2
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 2.2e-154 549.3 358 78.5
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 2.9e-154 548.9 350 79.4
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 2.9e-154 548.9 325 84.3
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 3.7e-154 548.5 333 80.8
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 3.7e-154 548.5 331 83.4
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 4.9e-154 548.1 352 78.4
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 6.4e-154 547.7 343 81.3
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 8.3e-154 547.4 337 80.7
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.1e-153 547.0 330 82.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.4e-153 546.6 349 79.9
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.8e-153 546.2 331 81.9
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.2e-153 545.4 363 78.5
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 3.2e-153 545.4 325 84.0
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 4.1e-153 545.0 340 80.6
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 4.1e-153 545.0 346 80.1
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 5.4e-153 544.7 326 83.4
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 7.0e-153 544.3 330 83.6
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 9.2e-153 543.9 326 83.4
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.2e-152 543.5 330 81.5
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.6e-152 543.1 325 84.0
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 2.0e-152 542.7 347 81.0
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 2.0e-152 542.7 327 82.9
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 2.7e-152 542.3 330 81.5
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 4.6e-152 541.6 324 83.6
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 4.6e-152 541.6 348 79.6
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 4.6e-152 541.6 349 79.7
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-151 540.0 330 81.2
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.3e-151 540.0 348 79.3
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.3e-151 540.0 341 79.5
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 2.3e-151 539.3 351 79.5
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 5.0e-151 538.1 328 82.3
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 6.6e-151 537.7 347 78.1
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 8.6e-151 537.3 342 79.2
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.5e-150 536.6 347 78.1
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.5e-150 536.6 323 83.9
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.9e-150 536.2 342 79.2
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.9e-150 536.2 340 79.4
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 5.6e-150 534.6 331 81.3
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 1.2e-149 533.5 329 81.2
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.1e-149 532.7 330 79.7
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 3.6e-149 531.9 387 73.4
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 8.0e-149 530.8 353 76.5
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.0e-148 530.4 336 80.1
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 5.2e-148 528.1 354 77.4
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 2.6e-147 525.8 354 76.6
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 3.4e-147 525.4 355 76.1
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.4e-147 525.0 355 78.3
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 5.8e-147 524.6 376 71.8
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 6.4e-146 521.2 333 78.4
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.4e-145 520.0 323 79.3
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 5.4e-145 518.1 380 72.4
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 7.8e-144 514.2 374 72.2
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.7e-143 513.1 330 78.5
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.3e-143 512.7 327 81.3
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.5e-142 509.2 301 84.7
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.2e-141 506.9 297 85.5
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 7.5e-139 497.7 338 76.3
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 9.8e-139 497.3 411 65.0
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.1e-136 489.6 326 75.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.1e-136 489.6 381 69.6
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 1.1e-134 483.8 326 76.1
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 1.9e-134 483.0 286 84.6
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.2e-133 480.3 329 75.4
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.8e-133 479.2 327 71.3
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-132 476.9 388 68.3
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 3.5e-128 462.2 322 71.4
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 3.6e-125 452.2 262 86.6
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 8.1e-125 451.1 329 68.1
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 8.9e-124 447.6 345 69.6
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.6e-123 446.0 324 69.1
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 5.8e-123 444.9 324 68.8
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 7.6e-123 444.5 293 80.5
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 2.2e-122 443.0 324 68.2
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.4e-121 440.3 352 66.2
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-118 429.9 391 62.7
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 2.1e-117 426.4 320 65.9
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.2e-115 420.6 302 69.9
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.6e-115 419.5 258 80.6
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.9e-113 413.3 308 64.6
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.5e-112 409.1 275 78.2
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.1e-110 404.1 336 65.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 1.1e-110 404.1 332 61.1
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 1.9e-110 403.3 252 80.2
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-108 397.1 248 81.9
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 2.4e-108 396.4 248 80.6
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 5.3e-108 395.2 300 66.7
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 8.4e-106 387.9 338 63.3
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 7.9e-104 381.3 274 69.0
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.0e-103 379.4 238 81.9
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 3.0e-103 379.4 240 82.1
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.5e-97 359.8 356 57.3
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.5e-97 359.8 238 76.1
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 2.3e-95 353.2 338 54.7
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 7.4e-94 348.2 234 76.5
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 5.5e-89 332.0 200 82.5
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.6e-72 276.2 286 56.3
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 2.0e-70 270.4 203 72.4
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.3e-61 241.1 161 73.3
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.2e-61 240.4 302 47.0
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 4.7e-56 222.6 130 83.1
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 3.4e-54 216.5 253 53.0
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.7e-53 214.2 141 72.3
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 3.1e-52 209.9 352 41.8
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.6e-51 207.6 126 81.0
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-47 194.5 353 41.9
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 4.9e-45 186.0 233 41.2
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.4e-44 184.5 113 78.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 4.0e-39 166.4 219 46.1
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 5.2e-39 166.0 102 73.5
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.2e-36 156.8 104 75.0
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 2.7e-35 153.7 103 69.9
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.5e-33 147.9 110 72.7
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.3e-33 146.7 96 78.1
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.2e-32 144.8 90 75.6
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 4.4e-30 136.3 86 70.9
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 2.9e-29 133.7 76 85.5
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.5e-25 121.3 189 47.1
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.5e-22 111.3 93 67.7
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 9.9e-22 108.6 77 63.6
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.9e-20 104.4 72 66.7
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 1.2e-19 101.7 73 78.1
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 7.8e-19 99.0 73 58.9
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 3.0e-18 97.1 62 80.6
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.3e-17 93.6 58 74.1
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.6e-16 91.3 78 69.2
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 5.8e-06 56.2 45 62.2


User provided reference genes

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