Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.3e-235 819.3 413 100.0
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 6.2e-225 783.9 413 96.6
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 4.0e-224 781.2 413 96.1
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 5.2e-224 780.8 413 95.9
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 5.8e-223 777.3 413 96.1
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 2.1e-188 662.5 416 83.9
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 4.1e-152 542.0 424 68.6
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 1.1e-141 507.3 424 66.3
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.5e-101 373.2 193 97.4
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 1.8e-83 313.9 403 49.1
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 1.6e-79 300.8 419 47.3
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 4.8e-76 289.3 387 45.5
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.0e-74 283.9 419 43.7
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 9.9e-74 281.6 389 46.0
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.2e-71 274.6 401 44.6
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 5.6e-69 265.8 405 44.9
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.5e-66 257.7 409 41.8
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 2.9e-65 253.4 386 43.3
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.4e-64 251.1 298 47.3
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 5.7e-61 239.2 389 41.4
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 1.6e-60 237.7 377 43.2
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 6.3e-60 235.7 382 41.1
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 4.1e-59 233.0 399 41.6
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 5.3e-59 232.6 335 44.8
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 1.9e-56 224.2 389 39.8
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 7.2e-56 222.2 395 39.7
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.8e-52 210.3 281 47.7
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 4.8e-52 209.5 390 39.0
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 6.3e-52 209.1 395 40.5
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 1.0e-49 201.8 292 44.2
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.2e-49 200.7 384 39.8
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 3.8e-49 199.9 393 36.4
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 3.8e-49 199.9 482 34.0
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.9e-48 197.6 405 37.8
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.7e-47 193.7 331 39.3
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.7e-47 193.7 331 39.3
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 6.1e-47 192.6 395 40.0
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 3.9e-46 189.9 329 37.7
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 5.1e-46 189.5 352 36.9
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 6.7e-46 189.1 393 37.7
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 1.7e-44 184.5 331 36.6
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 1.8e-43 181.0 394 33.8
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 2.4e-43 180.6 229 48.0
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 2.4e-43 180.6 229 48.0
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 1.5e-42 177.9 337 36.5
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 4.5e-42 176.4 236 46.2
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 4.5e-42 176.4 367 36.5
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 1.3e-41 174.9 333 36.3
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 2.9e-41 173.7 359 40.4
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 3.8e-41 173.3 424 34.2
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 8.5e-41 172.2 424 33.3
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.2e-39 168.3 353 36.0
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 2.7e-39 167.2 337 36.2
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 9.7e-37 158.7 345 34.8
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 3.7e-36 156.8 338 36.4
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 9.1e-35 152.1 414 31.9
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 2.0e-34 151.0 349 35.0
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 1.7e-33 147.9 419 34.8
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 2.9e-33 147.1 284 38.4
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 2.7e-31 140.6 333 31.2
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 8.0e-31 139.0 346 31.2
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 3.0e-30 137.1 389 34.2
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 4.0e-30 136.7 421 30.6
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 2.0e-29 134.4 345 35.4
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 2.0e-29 134.4 397 34.0
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 2.6e-29 134.0 352 34.7
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 2.6e-29 134.0 352 34.9
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 1.3e-28 131.7 397 32.2
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 2.2e-28 131.0 221 40.7
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 6.3e-28 129.4 218 41.7
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 1.4e-27 128.3 216 43.5
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 1.4e-27 128.3 216 43.5
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 1.4e-27 128.3 335 31.9
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 1.8e-27 127.9 253 38.7
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 1.6e-26 124.8 387 33.1
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 2.7e-26 124.0 302 35.1
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 7.7e-26 122.5 379 31.7
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 7.7e-26 122.5 334 32.0
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 5.5e-24 116.3 310 32.6
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 7.2e-24 115.9 361 31.9
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 6.1e-23 112.8 334 29.6
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 1.8e-22 111.3 352 32.1
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 4.0e-22 110.2 273 32.6
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 2.0e-21 107.8 393 30.0
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 2.0e-21 107.8 335 29.3
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 2.0e-21 107.8 335 29.3
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.0e-21 107.8 334 29.6
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 2.6e-21 107.5 334 27.8
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 3.4e-21 107.1 332 30.1
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 3.4e-21 107.1 335 29.6
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 4.4e-21 106.7 335 29.6
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 5.7e-21 106.3 133 49.6
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.3e-20 105.1 399 29.3
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.3e-20 105.1 331 31.1
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 1.7e-20 104.8 340 32.1
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 4.8e-20 103.2 334 29.9
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 6.3e-20 102.8 336 31.0
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 1.1e-19 102.1 335 28.7
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 1.4e-19 101.7 325 28.3
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.8e-19 101.3 336 31.5
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 3.1e-19 100.5 228 33.8
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 5.4e-19 99.8 328 31.7
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 7.0e-19 99.4 341 32.3
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 9.1e-19 99.0 338 31.1
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 9.1e-19 99.0 328 31.7
MBI13_g09214_MAGBIO Magnolia biondii HOM05D007266 ORTHO05D005982 1.2e-18 98.6 327 28.1
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 1.2e-18 98.6 218 35.3
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 1.6e-18 98.2 274 32.1
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 2.0e-18 97.8 149 41.6
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 1.0e-17 95.5 337 28.8
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.0e-17 95.5 247 34.8
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.3e-17 95.1 337 29.4
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-17 94.7 337 30.0
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 1.7e-17 94.7 337 30.0
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 5.0e-17 93.2 337 28.5
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 6.5e-17 92.8 108 55.6
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 1.1e-16 92.0 337 27.6
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 1.1e-16 92.0 337 27.6
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 1.1e-16 92.0 337 27.6
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 1.9e-16 91.3 334 31.4
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 7.2e-16 89.4 349 28.9
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 1.2e-15 88.6 400 27.2
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 2.8e-15 87.4 334 27.5
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.8e-15 87.4 222 33.8
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 1.0e-14 85.5 338 29.0
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 1.4e-14 85.1 229 34.1
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 6.8e-14 82.8 258 31.8
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 8.8e-14 82.4 285 31.6
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 2.0e-13 81.3 359 28.1
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 2.6e-13 80.9 238 31.1
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 3.4e-13 80.5 113 44.2
Lalb_Chr01g0007421 Lupinus albus HOM05D007266 ORTHO05D005982 2.2e-12 77.8 126 40.5
TAR623G0101 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.8e-11 74.7 133 36.8
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 3.1e-11 73.9 98 42.9
Actinidia01518 Actinidia chinensis HOM05D007266 ORTHO05D005982 1.0e-09 68.9 86 41.9
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 1.3e-09 68.6 106 39.6
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.3e-09 67.8 101 41.6
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 6.6e-09 66.2 100 41.0
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 1.1e-08 65.5 107 41.1
SHI11361 Sapria himalayana HOM05D000436 ORTHO05D000678 1.1e-08 65.5 362 27.1
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 4.3e-08 63.5 318 24.2
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 1.2e-07 62.0 109 37.6
Hma1.2p1_0704F.1_g206720 Hydrangea macrophylla HOM05D003662 ORTHO05D001824 2.1e-07 61.2 203 28.1
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 2.8e-07 60.8 95 37.9
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 2.8e-07 60.8 92 37.0
AagrBONN_evm.TU.Sc2ySwM_344.4535 Anthoceros agrestis HOM05D004414 ORTHO05D001824 8.0e-07 59.3 108 38.9
Manes.06G010600 Manihot esculenta HOM05D003662 ORTHO05D001824 8.0e-07 59.3 128 35.2
Hund06389 Selenicereus undatus HOM05D003662 ORTHO05D001824 8.0e-07 59.3 106 36.8
EL10Ac9g21467 Beta vulgaris HOM05D003662 ORTHO05D001824 1.4e-06 58.5 129 36.4
Hund00056 Selenicereus undatus HOM05D003662 ORTHO05D001824 1.4e-06 58.5 93 38.7
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 1.4e-06 58.5 92 39.1
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.8e-06 58.2 96 39.6
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 1.8e-06 58.2 93 35.5
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 1.8e-06 58.2 92 34.8
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 1.8e-06 58.2 241 26.1
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 1.8e-06 58.2 123 30.9
MD07G1036600 Malus domestica HOM05D004414 ORTHO05D001824 2.3e-06 57.8 155 26.5
TWI63G0867 Tripterygium wilfordii HOM05D004414 ORTHO05D001824 2.3e-06 57.8 131 27.5
Gohir.A04G113200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 3.0e-06 57.4 137 29.9
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 3.0e-06 57.4 92 34.8
SMO171G0055 Selaginella moellendorffii HOM05D003662 ORTHO05D001824 3.0e-06 57.4 92 39.1
Glyma.08G179400 Glycine max HOM05D003662 ORTHO05D001824 4.0e-06 57.0 176 26.7
Mapoly0169s0020 Marchantia polymorpha HOM05D003662 ORTHO05D001824 4.0e-06 57.0 110 40.9
Oeu007958.1 Olea europaea HOM05D003662 ORTHO05D001824 5.2e-06 56.6 122 34.4
Prupe.2G032000 Prunus persica HOM05D004414 ORTHO05D001824 5.2e-06 56.6 140 27.9
TWI14G0069 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 5.2e-06 56.6 93 37.6
Atru.chr12.1399 Acer truncatum HOM05D004414 ORTHO05D001824 6.8e-06 56.2 134 29.1
CSS0002395 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 6.8e-06 56.2 128 35.2
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 6.8e-06 56.2 100 36.0
Dinv09038 Davidia involucrata HOM05D003662 ORTHO05D001824 6.8e-06 56.2 107 36.4
HPP92_012077 Vanilla planifolia HOM05D005673 ORTHO05D037019 8.9e-06 55.8 94 38.3


User provided reference genes

Program Settings