Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1589 Fragaria x ananassa HOM05D006324 ORTHO05D007463 1.8e-96 355.9 181 100.0
FAN01G1980 Fragaria x ananassa HOM05D006324 ORTHO05D007463 5.3e-80 301.2 181 87.3
FAN06G0074 Fragaria x ananassa HOM05D006324 ORTHO05D007463 2.7e-76 288.9 184 83.7
FvH4_7g01340 Fragaria vesca HOM05D006324 ORTHO05D007463 7.9e-76 287.3 181 84.5
FAN03G2871 Fragaria x ananassa HOM05D006324 ORTHO05D007463 1.4e-72 276.6 181 83.4
RcHm_v2.0_Chr1g0317051 Rosa chinensis HOM05D006324 ORTHO05D007463 3.2e-69 265.4 181 77.9
Prupe.2G017700 Prunus persica HOM05D006324 ORTHO05D007463 8.3e-57 224.2 181 66.9
Prupe.2G019000 Prunus persica HOM05D006324 ORTHO05D007463 1.1e-56 223.8 181 66.9
MD02G1307800 Malus domestica HOM05D006324 ORTHO05D007463 3.1e-56 222.2 181 65.7
MD07G1017800 Malus domestica HOM05D006324 ORTHO05D007463 1.8e-51 206.5 181 61.3
Haze_03172 Corylus avellana HOM05D006324 ORTHO05D007463 4.2e-45 185.3 203 54.7
CANSAT80G0022 Cannabis sativa HOM05D006324 ORTHO05D007463 7.5e-42 174.5 183 57.4
Potri.001G263800 Populus trichocarpa HOM05D006324 ORTHO05D007463 4.9e-41 171.8 192 53.1
Manes.07G007700 Manihot esculenta HOM05D006324 ORTHO05D007463 7.0e-40 167.9 192 53.6
QL04p008819 Quercus lobata HOM05D006324 ORTHO05D007463 9.2e-40 167.5 195 54.9
GSVIVG01032154001 Vitis vinifera HOM05D006324 ORTHO05D007463 4.5e-39 165.2 190 52.1
Cpa.g.sc12.280 Carica papaya HOM05D006324 ORTHO05D007463 1.0e-38 164.1 201 49.3
Sopen01g034520 Solanum pennellii HOM05D006324 ORTHO05D007463 2.3e-38 162.9 192 50.0
TAR633G2637 Trochodendron aralioides HOM05D006324 ORTHO05D007463 3.9e-38 162.2 193 51.8
Dinv09327 Davidia involucrata HOM05D006324 ORTHO05D007463 1.5e-37 160.2 192 49.5
Lalb_Chr01g0000431 Lupinus albus HOM05D006324 ORTHO05D007463 1.5e-37 160.2 192 48.4
Solyc01g087550.3 Solanum lycopersicum HOM05D006324 ORTHO05D007463 2.5e-37 159.5 192 49.0
PGSC0003DMG401006791 Solanum tuberosum HOM05D006324 ORTHO05D007463 3.3e-37 159.1 192 49.0
Thecc.09G178400 Theobroma cacao HOM05D006324 ORTHO05D007463 3.3e-37 159.1 191 51.8
CAN.G219.51 Capsicum annuum HOM05D006324 ORTHO05D007463 5.6e-37 158.3 192 49.0
Sabra16G0162000 Salix brachista HOM05D006324 ORTHO05D007463 5.6e-37 158.3 193 50.3
TWI74G1214 Tripterygium wilfordii HOM05D006324 ORTHO05D007463 5.6e-37 158.3 192 50.5
Nitab4.5_0005981g0020 Nicotiana tabacum HOM05D006324 ORTHO05D007463 1.6e-36 156.8 202 49.0
CiPaw.14G001800 Carya illinoinensis HOM05D006324 ORTHO05D007463 4.7e-36 155.2 198 49.5
Peaxi162Scf00019g00017 Petunia axillaris HOM05D006324 ORTHO05D007463 1.4e-35 153.7 192 46.4
CiPaw.13G007100 Carya illinoinensis HOM05D006324 ORTHO05D007463 3.1e-35 152.5 192 50.0
Duzib133G0472 Durio zibethinus HOM05D006324 ORTHO05D007463 4.0e-35 152.1 191 48.7
arahy.Tifrunner.gnm1.ann1.Q955DD Arachis hypogaea HOM05D006324 ORTHO05D007463 8.9e-35 151.0 197 48.7
arahy.Tifrunner.gnm1.ann1.N2H6V0 Arachis hypogaea HOM05D006324 ORTHO05D007463 1.2e-34 150.6 197 48.7
Nitab4.5_0000707g0250 Nicotiana tabacum HOM05D006324 ORTHO05D007463 1.5e-34 150.2 192 49.5
Gohir.A12G094300 Gossypium hirsutum HOM05D006324 ORTHO05D007463 4.4e-34 148.7 190 48.4
Gorai.008G105500 Gossypium raimondii HOM05D006324 ORTHO05D007463 7.5e-34 147.9 191 47.6
VMungo0464G1625 Vigna mungo HOM05D006324 ORTHO05D007463 1.7e-33 146.7 194 47.4
Cc02_g28340 Coffea canephora HOM05D006324 ORTHO05D007463 3.7e-33 145.6 189 44.4
Gohir.D12G097000 Gossypium hirsutum HOM05D006324 ORTHO05D007463 6.4e-33 144.8 191 47.1
Lj9C638G12 Lonicera japonica HOM05D006324 ORTHO05D007463 1.1e-32 144.1 235 40.4
Nn7g36262 Nelumbo nucifera HOM05D006324 ORTHO05D007463 5.4e-32 141.7 192 46.9
CSS0038258 Camellia sinensis var. sinensis HOM05D006324 ORTHO05D007463 7.0e-32 141.4 177 45.2
MELO3C023574.2 Cucumis melo HOM05D000009 ORTHO05D007463 7.0e-32 141.4 192 47.9
Peaxi162Scf00071g01141 Petunia axillaris HOM05D006324 ORTHO05D007463 7.0e-32 141.4 196 45.9
COL.COLO4_24418 Corchorus olitorius HOM05D006324 ORTHO05D007463 1.6e-31 140.2 168 50.0
Hma1.2p1_1328F.1_g275960 Hydrangea macrophylla HOM05D006324 ORTHO05D007463 1.6e-31 140.2 215 43.3
Sed0027296 Sechium edule HOM05D006324 ORTHO05D007463 2.0e-31 139.8 192 47.4
Eucgr.G03365 Eucalyptus grandis HOM05D006324 ORTHO05D007463 2.7e-31 139.4 192 48.4
Migut.N01783 Erythranthe guttata HOM05D006324 ORTHO05D007463 4.6e-31 138.7 191 48.2
Lj3g0011240 Lotus japonicus HOM05D006324 ORTHO05D007463 7.8e-31 137.9 198 43.9
Ca_14667_v3 Cicer arietinum L. HOM05D006324 ORTHO05D007463 1.0e-30 137.5 185 48.1
CsaV3_7G030870 Cucumis sativus L. HOM05D006324 ORTHO05D007463 1.0e-30 137.5 192 46.4
Lj3g0003899 Lotus japonicus HOM05D006324 ORTHO05D007463 1.0e-30 137.5 199 43.7
Oeu049007.1 Olea europaea HOM05D006324 ORTHO05D007463 1.3e-30 137.1 195 46.7
AL6G20110 Arabidopsis lyrata HOM05D006324 ORTHO05D007463 1.7e-30 136.7 182 48.9
MSTRG.17017 Avicennia marina HOM05D006324 ORTHO05D007463 1.7e-30 136.7 195 46.7
SalBow6G4289 Salvia bowleyana HOM05D006324 ORTHO05D007463 1.7e-30 136.7 197 46.7
Migut.O00526 Erythranthe guttata HOM05D006324 ORTHO05D007463 3.0e-30 136.0 190 47.9
PGR031G0767 Punica granatum HOM05D006324 ORTHO05D007463 6.6e-30 134.8 192 47.4
vmacro13685 Vaccinium macrocarpon HOM05D006324 ORTHO05D007463 8.6e-30 134.4 171 47.4
Rhsim07G0057200 Rhododendron simsii HOM05D006324 ORTHO05D007463 1.5e-29 133.7 171 46.8
Glyma.09G227600 Glycine max HOM05D006324 ORTHO05D007463 4.3e-29 132.1 191 45.5
Dinv43416 Davidia involucrata HOM05D006324 ORTHO05D007463 7.3e-29 131.3 141 51.8
TWI53G0677 Tripterygium wilfordii HOM05D006324 ORTHO05D007463 2.8e-28 129.4 191 44.0
Sc16g0002910 Simmondsia chinensis HOM05D006324 ORTHO05D007463 3.6e-28 129.0 190 44.2
BraA02t04996Z Brassica rapa HOM05D006324 ORTHO05D007463 4.7e-28 128.6 179 47.5
Glyma.12G009100 Glycine max HOM05D006324 ORTHO05D007463 6.2e-28 128.3 191 44.5
ECA248G0404 Erigeron canadensis HOM05D000636 ORTHO05D002338 8.0e-28 127.9 190 44.7
CARHR203710 Cardamine hirsuta HOM05D006324 ORTHO05D007463 1.4e-27 127.1 183 46.4
AT5G09680 Arabidopsis thaliana HOM05D006324 ORTHO05D007463 4.0e-27 125.6 183 46.4
Ciclev10032828m.g Citrus clementina HOM05D006324 ORTHO05D007463 4.0e-27 125.6 184 47.8
HanXRQChr12g0357631 Helianthus annuus HOM05D006324 ORTHO05D007463 4.0e-27 125.6 183 47.0
Phvul.004G011500 Phaseolus vulgaris HOM05D006324 ORTHO05D007463 4.0e-27 125.6 194 45.9
Carub.0008s1534 Capsella rubella HOM05D006324 ORTHO05D007463 6.8e-27 124.8 187 44.4
Hund18591 Selenicereus undatus HOM05D006324 ORTHO05D007463 8.9e-27 124.4 192 43.2
Carub.0004s0655 Capsella rubella HOM05D006324 ORTHO05D007463 1.2e-26 124.0 186 45.7
Aa31LG3G17390 Aethionema arabicum HOM05D006324 ORTHO05D007463 1.5e-26 123.6 113 60.2
Sp6g33690 Schrenkiella parvula HOM05D006324 ORTHO05D007463 2.0e-26 123.2 183 44.8
BcaC03g13270 Brassica carinata HOM05D006324 ORTHO05D007463 2.6e-26 122.9 179 46.9
C02p04000 Brassica napus HOM05D006324 ORTHO05D007463 2.6e-26 122.9 179 46.9
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 2.6e-26 122.9 179 46.9
AUR62023082 Chenopodium quinoa HOM05D006324 ORTHO05D007463 2.6e-26 122.9 183 43.2
SGA_v2.0_scaffold119G32747 Striga asiatica HOM05D006324 ORTHO05D007463 9.8e-26 120.9 199 40.7
Medtr0085s0010 Medicago truncatula HOM05D006324 ORTHO05D007463 1.3e-25 120.6 185 43.8
Thhalv10014674m.g Eutrema salsugineum HOM05D006324 ORTHO05D007463 2.9e-25 119.4 186 46.2
A10p27710 Brassica napus HOM05D000446 ORTHO05D000321 3.7e-25 119.0 183 43.7
BcaB05g21537 Brassica carinata HOM05D006324 ORTHO05D007463 6.4e-25 118.2 184 46.7
AUR62009399 Chenopodium quinoa HOM05D006324 ORTHO05D007463 8.3e-25 117.9 183 41.5
Lsat_1_v5_gn_1_105261 Lactuca sativa HOM05D006324 ORTHO05D007463 1.4e-24 117.1 153 47.1
unitig_8.g3776 Utricularia gibba HOM05D006324 ORTHO05D007463 1.4e-24 117.1 190 44.2
Ah.10g038740 Amaranthus hybridus HOM05D006324 ORTHO05D007463 1.9e-24 116.7 186 41.9
Lj9C636G13 Lonicera japonica HOM05D006324 ORTHO05D007463 1.9e-24 116.7 213 39.0
BraA10t44823Z Brassica rapa HOM05D000446 ORTHO05D000321 3.2e-24 115.9 183 42.1
BcaB08g37192 Brassica carinata HOM05D000446 ORTHO05D000321 5.4e-24 115.2 183 42.1
C09p67800 Brassica napus HOM05D000446 ORTHO05D000321 5.4e-24 115.2 183 42.1
BolC9t59542H Brassica oleracea HOM05D000446 ORTHO05D000321 5.4e-24 115.2 183 42.1
EL10Ac2g04346 Beta vulgaris HOM05D006324 ORTHO05D007463 9.2e-24 114.4 186 41.4
DCAR_023954 Daucus carota HOM05D006324 ORTHO05D007463 1.6e-23 113.6 183 42.1
MSTRG.20569 Avicennia marina HOM05D006324 ORTHO05D007463 2.1e-23 113.2 190 41.6
A02p00110 Brassica napus HOM05D006324 ORTHO05D007463 4.6e-23 112.1 207 40.6
Atru.chr11.2585 Acer truncatum HOM05D006324 ORTHO05D007463 6.0e-23 111.7 183 43.7
Os07g0232200 Oryza sativa ssp. japonica HOM05D006324 ORTHO05D007463 7.3e-21 104.8 197 39.6
BcaB08g37153 Brassica carinata HOM05D006324 ORTHO05D007463 1.6e-20 103.6 124 50.0
Aqoxy5G04067 Aquilegia oxysepala HOM05D006324 ORTHO05D007463 3.6e-20 102.4 209 36.4
CDE02G1674 Ceratophyllum demersum HOM05D006324 ORTHO05D007463 6.8e-19 98.2 167 38.9
MBI04_g17676_MAGBIO Magnolia biondii HOM05D006324 ORTHO05D007463 8.9e-19 97.8 163 40.5
Zm00001eb095000 Zea mays HOM05D006324 ORTHO05D007463 2.0e-18 96.7 173 39.9
Aa31sc1834G10 Aethionema arabicum HOM05D006324 ORTHO05D007463 3.4e-18 95.9 50 84.0
ATR0618G422 Amborella trichopoda HOM05D006324 ORTHO05D007463 1.3e-17 94.0 204 35.8
HanXRQChr01g0015801 Helianthus annuus HOM05D006324 ORTHO05D007463 1.1e-16 90.9 135 44.4
ClCG09G003970 Citrullus lanatus HOM05D006324 ORTHO05D007463 1.4e-16 90.5 115 47.8
SEGI_35641 Sequoiadendron giganteum HOM05D006324 ORTHO05D007463 7.1e-16 88.2 185 35.7
HPP92_005467 Vanilla planifolia HOM05D006324 ORTHO05D007463 1.6e-15 87.0 169 35.5
SMO331G0043 Selaginella moellendorffii HOM05D006324 ORTHO05D007463 4.6e-15 85.5 75 54.7
Mapoly0022s0092 Marchantia polymorpha HOM05D006324 ORTHO05D007463 7.8e-15 84.7 89 48.3
Pp3c20_23480 Physcomitrium patens HOM05D006324 ORTHO05D007463 1.7e-14 83.6 76 55.3
AUR62027968 Chenopodium quinoa HOM05D006324 ORTHO05D007463 2.3e-14 83.2 60 65.0
MBI02_g23139_MAGBIO Magnolia biondii HOM05D006324 ORTHO05D007463 6.6e-14 81.6 87 49.4
CBR_g29320 Chara braunii HOM05D006324 ORTHO05D007463 7.3e-13 78.2 101 43.6
Nitab4.5_0000087g0020 Nicotiana tabacum HOM05D006324 ORTHO05D007463 7.3e-13 78.2 132 40.2
AUR62032791 Chenopodium quinoa HOM05D000001 ORTHO05D000501 1.2e-12 77.4 53 64.2
AagrBONN_evm.TU.Sc2ySwM_344.4124 Anthoceros agrestis HOM05D006324 ORTHO05D007463 3.1e-11 72.8 51 58.8
Psat0s1243g0040 Pisum sativum HOM05D006324 ORTHO05D007463 1.2e-10 70.9 140 41.4
SHI04081 Sapria himalayana HOM05D006324 ORTHO05D007463 2.0e-10 70.1 74 51.4
Cre13.g574800 Chlamydomonas reinhardtii HOM05D006324 ORTHO05D007463 3.2e-08 62.8 73 43.8
MCO04G106 Micromonas commoda HOM05D006324 ORTHO05D007463 1.6e-07 60.5 51 51.0


User provided reference genes

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