Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.7e-129 464.9 238 100.0
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 4.8e-113 411.4 245 87.3
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 6.3e-113 411.0 290 78.3
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.6e-108 396.4 248 82.3
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.6e-108 396.4 248 82.3
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.1e-108 396.0 248 81.9
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.1e-108 396.0 248 81.9
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 3.6e-108 395.2 248 82.3
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.0e-107 392.1 248 81.5
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-105 386.7 265 77.4
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-104 383.6 203 98.0
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 1.8e-104 382.9 242 81.0
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.2e-103 380.2 245 79.6
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 6.5e-102 374.4 246 78.0
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 8.5e-102 374.0 247 77.3
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.9e-101 372.9 248 77.8
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.5e-101 372.5 246 77.6
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.5e-101 372.5 246 77.2
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 9.4e-101 370.5 246 76.8
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 9.4e-101 370.5 246 76.4
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 9.4e-101 370.5 246 76.8
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.2e-100 370.2 247 76.9
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.6e-100 369.8 245 77.1
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 2.1e-100 369.4 246 76.4
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 2.7e-100 369.0 246 77.2
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 4.7e-100 368.2 248 74.6
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 4.7e-100 368.2 245 77.1
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 4.7e-100 368.2 246 76.0
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 4.7e-100 368.2 240 78.8
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 4.7e-100 368.2 246 76.0
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 4.7e-100 368.2 245 77.1
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 7.9e-100 367.5 245 76.7
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.0e-99 367.1 247 76.5
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.0e-99 367.1 240 78.3
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.0e-99 367.1 240 78.3
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.0e-99 367.1 239 77.0
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.0e-99 367.1 247 75.7
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.4e-99 366.7 246 77.2
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.4e-99 366.7 246 76.4
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.4e-99 366.7 247 75.3
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.8e-99 366.3 246 76.0
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.8e-99 366.3 245 75.5
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.3e-99 365.9 240 77.9
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.3e-99 365.9 247 74.9
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 3.0e-99 365.5 244 75.8
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 3.9e-99 365.2 248 75.4
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 3.9e-99 365.2 240 77.9
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 3.9e-99 365.2 244 76.6
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 3.9e-99 365.2 246 75.2
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 5.1e-99 364.8 247 77.7
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 6.7e-99 364.4 240 77.9
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 6.7e-99 364.4 256 72.7
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 6.7e-99 364.4 245 74.7
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 8.8e-99 364.0 245 75.9
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 8.8e-99 364.0 245 75.1
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 8.8e-99 364.0 240 76.7
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 1.1e-98 363.6 244 75.8
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.5e-98 363.2 244 75.8
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 2.6e-98 362.5 245 75.1
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 2.6e-98 362.5 246 74.4
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 2.6e-98 362.5 244 75.8
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 3.3e-98 362.1 248 75.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 4.4e-98 361.7 246 74.8
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 5.7e-98 361.3 245 75.5
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 5.7e-98 361.3 240 75.4
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 5.7e-98 361.3 245 75.1
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 5.7e-98 361.3 240 76.2
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.4e-98 360.9 238 77.3
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 7.4e-98 360.9 238 77.3
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 7.4e-98 360.9 243 76.5
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 7.4e-98 360.9 240 76.2
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 9.7e-98 360.5 247 74.5
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 9.7e-98 360.5 244 75.4
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-97 360.1 245 75.1
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.3e-97 360.1 246 75.2
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.7e-97 359.8 238 76.9
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.7e-97 359.8 246 74.8
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.8e-97 359.0 244 75.8
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.7e-97 358.6 245 73.9
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.7e-97 358.6 245 73.9
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 4.8e-97 358.2 245 74.3
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.8e-96 356.3 246 75.2
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.8e-96 356.3 240 75.8
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 1.8e-96 356.3 248 73.8
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 3.1e-96 355.5 245 74.7
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 3.1e-96 355.5 249 74.3
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 3.1e-96 355.5 241 75.9
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 4.1e-96 355.1 245 75.5
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 5.3e-96 354.8 246 74.4
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 9.1e-96 354.0 245 73.9
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 9.1e-96 354.0 240 74.2
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.2e-95 353.6 246 74.0
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.5e-95 353.2 246 74.4
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.0e-95 352.8 279 67.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 2.6e-95 352.4 247 73.3
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 2.6e-95 352.4 243 73.7
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 2.6e-95 352.4 248 73.0
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 5.9e-95 351.3 240 73.8
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 7.7e-95 350.9 239 74.9
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 1.7e-94 349.7 248 73.0
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.2e-94 349.4 245 72.2
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.9e-94 349.0 274 67.9
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 2.9e-94 349.0 239 74.9
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.1e-93 347.1 238 73.1
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 1.4e-93 346.7 244 72.1
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 5.5e-93 344.7 274 65.3
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 8.0e-92 340.9 240 74.2
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.0e-91 340.5 253 71.1
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 5.2e-91 338.2 287 64.8
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 3.3e-90 335.5 244 69.7
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.7e-89 333.2 219 77.2
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.7e-86 323.2 304 58.9
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.8e-86 322.0 242 68.2
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.5e-85 320.1 201 79.1
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 5.5e-85 318.2 243 70.4
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.6e-84 315.5 200 77.5
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 6.1e-84 314.7 236 70.3
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 6.1e-84 314.7 242 70.2
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 2.6e-82 309.3 240 68.3
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 4.4e-82 308.5 239 69.9
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 4.1e-80 302.0 240 65.8
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 5.3e-80 301.6 247 63.2
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.7e-79 299.3 296 58.1
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.3e-78 297.0 244 62.3
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.0e-78 295.0 286 61.9
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.1e-77 293.9 241 64.3
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.5e-77 292.7 241 63.9
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 4.2e-77 292.0 244 63.1
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 7.2e-77 291.2 238 63.0
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 5.2e-75 285.0 245 60.0
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 7.7e-71 271.2 227 62.1
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 6.6e-70 268.1 246 55.7
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.2e-68 263.8 251 60.6
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.6e-68 262.3 245 57.1
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-66 256.9 204 72.1
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 9.8e-66 254.2 211 62.6
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.3e-59 233.0 161 70.8
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.4e-57 224.9 265 51.3
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 5.4e-56 221.9 234 52.6
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 7.8e-55 218.0 154 76.0
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.9e-53 213.4 156 72.4
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 4.3e-53 212.2 130 76.9
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 5.2e-51 205.3 243 50.2
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 5.2e-51 205.3 154 70.8
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 6.8e-51 204.9 176 62.5
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.0e-50 203.4 151 70.2
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 7.5e-50 201.4 126 76.2
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.2e-48 196.1 246 49.6
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.2e-39 167.5 218 47.2
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.3e-38 164.1 160 61.9
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.6e-38 161.8 99 77.8
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 9.5e-37 157.9 102 71.6
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.2e-36 157.5 95 75.8
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 6.4e-33 145.2 103 66.0
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.0e-30 137.9 119 64.7
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.9e-30 136.0 206 36.9
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-27 127.9 86 68.6
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 4.6e-23 112.5 159 41.5
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.0e-22 111.3 96 63.5
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 6.2e-20 102.1 77 62.3
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.8e-19 100.5 73 61.6
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 4.0e-19 99.4 79 57.0
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 5.3e-19 99.0 185 40.0
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 9.0e-19 98.2 57 91.2
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 7.1e-16 88.6 78 66.7
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.6e-15 87.4 68 67.6
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 6.0e-07 58.9 35 77.1
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.0e-06 58.2 60 51.7
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.8e-06 57.4 32 81.2
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 8.7e-06 55.1 32 81.2


User provided reference genes

Program Settings