Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 0.0e+00 1493.0 739 100.0
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 0.0e+00 1290.4 721 91.4
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 0.0e+00 1283.1 718 91.2
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 0.0e+00 1208.0 667 92.2
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 0.0e+00 1089.3 684 82.6
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 6.4e-257 891.0 679 70.5
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.2e-233 812.8 680 66.2
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 8.4e-225 784.3 696 60.2
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 7.2e-216 754.6 701 58.2
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 7.9e-207 724.5 697 57.2
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 2.3e-198 696.4 700 55.7
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 2.0e-197 693.3 699 54.9
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 3.3e-197 692.6 669 57.5
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 7.4e-197 691.4 745 52.5
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 5.3e-195 685.3 702 54.1
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 3.2e-192 676.0 699 53.1
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 7.2e-192 674.9 704 54.5
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.6e-191 673.7 703 55.3
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 2.3e-190 669.8 704 53.3
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 4.4e-181 639.0 685 52.0
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.8e-180 636.3 685 51.2
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 9.1e-179 631.3 698 50.6
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 3.8e-177 625.9 694 51.4
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 2.5e-176 623.2 680 52.5
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 7.2e-176 621.7 676 53.3
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 9.5e-176 621.3 698 50.0
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 4.7e-175 619.0 716 49.9
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 4.4e-173 612.5 701 52.6
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 1.3e-172 610.9 701 52.8
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 8.3e-172 608.2 625 55.7
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.1e-171 607.8 662 50.9
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 5.0e-169 599.0 693 47.9
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 1.1e-168 597.8 699 49.2
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 3.3e-168 596.3 692 48.0
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 2.8e-167 593.2 700 47.4
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 4.7e-167 592.4 692 50.6
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 1.4e-166 590.9 775 46.8
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 6.8e-166 588.6 687 50.5
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 1.7e-164 583.9 709 47.1
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 2.9e-164 583.2 679 50.5
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 6.4e-164 582.0 683 49.8
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 1.1e-163 581.3 727 46.9
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 3.2e-163 579.7 697 49.2
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 4.1e-163 579.3 682 49.4
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 7.0e-163 578.6 597 52.4
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 3.1e-158 563.1 693 48.3
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 5.2e-158 562.4 682 47.2
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 2.9e-156 556.6 731 45.6
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 2.4e-155 553.5 680 45.3
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 4.1e-155 552.7 729 45.7
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 7.1e-155 552.0 672 48.7
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 2.1e-154 550.4 681 45.1
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 2.3e-153 547.0 686 48.1
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 2.3e-153 547.0 665 48.7
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 3.0e-153 546.6 684 46.9
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 3.9e-153 546.2 761 44.3
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 3.3e-152 543.1 688 45.1
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 5.6e-152 542.3 682 44.9
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 5.6e-152 542.3 713 45.9
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 5.6e-152 542.3 707 45.1
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 9.5e-152 541.6 686 48.0
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 1.2e-151 541.2 678 45.0
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.6e-151 540.8 682 44.9
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.8e-150 537.3 642 48.4
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 8.9e-150 535.0 723 43.7
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.2e-149 534.6 677 46.5
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.5e-149 534.3 607 51.4
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 2.6e-149 533.5 648 47.1
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 9.9e-149 531.6 677 46.7
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 1.7e-148 530.8 708 44.9
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.3e-145 521.2 698 45.8
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 1.1e-144 518.1 686 43.4
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 9.6e-144 515.0 643 47.1
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 1.8e-142 510.8 685 44.8
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 1.5e-141 507.7 693 42.7
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 2.9e-140 503.4 766 41.3
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 6.4e-140 502.3 656 43.1
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 9.6e-136 488.4 648 44.0
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 8.1e-135 485.3 673 41.6
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 6.9e-126 455.7 704 41.8
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 9.0e-126 455.3 578 45.7
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 2.7e-122 443.7 541 47.9
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.0e-121 441.8 490 52.0
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 2.8e-119 433.7 520 47.5
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 9.0e-118 428.7 474 53.4
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.4e-117 426.8 570 46.3
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 5.5e-115 419.5 579 45.8
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 3.8e-108 396.7 348 60.9
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 1.6e-106 391.3 411 52.6
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.1e-106 391.0 434 52.3
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 2.5e-104 384.0 649 39.8
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 2.2e-103 380.9 407 50.1
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 2.4e-102 377.5 441 50.3
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 7.2e-99 365.9 536 43.3
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 2.5e-96 357.5 546 42.1
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 4.5e-93 346.7 346 56.1
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 7.9e-90 335.9 273 63.7
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.3e-89 334.3 380 50.8
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.5e-88 331.6 349 53.0
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 5.2e-81 306.6 299 53.8
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 3.1e-78 297.4 647 31.5
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 1.8e-73 281.6 691 29.7
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 2.1e-66 258.1 806 28.0
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 6.3e-63 246.5 273 48.7
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 1.8e-62 245.0 256 53.5
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.0e-60 239.2 248 55.2
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.5e-59 234.6 302 46.0
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 2.5e-59 234.6 649 28.4
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.6e-48 198.0 271 45.8
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 7.0e-46 189.9 277 44.4
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.2e-45 189.1 247 46.2
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 8.9e-41 172.9 155 56.1
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 3.9e-36 157.5 636 26.6
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 3.4e-32 144.4 657 26.0
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 1.3e-31 142.5 117 60.7
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 3.8e-31 141.0 107 61.7
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 2.4e-30 138.3 861 21.3
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 1.2e-29 136.0 119 58.0
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.7e-29 134.8 108 55.6
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.1e-25 121.3 98 66.3
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 1.3e-23 115.9 246 35.8
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 6.4e-23 113.6 94 61.7
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 5.6e-19 100.5 95 54.7
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 9.3e-14 83.2 349 24.6
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 6.0e-13 80.5 139 36.7
RcHm_v2.0_Chr1g0336331 Rosa chinensis HOM05D003123 ORTHO05D003492 6.2e-10 70.5 59 61.0
RcHm_v2.0_Chr6g0290011 Rosa chinensis HOM05D005820 ORTHO05D007116 6.9e-09 67.0 35 85.7
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 6.4e-07 60.5 129 34.1


User provided reference genes

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