Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G1023 Fragaria x ananassa HOM05D003928 ORTHO05D007133 3.7e-104 381.7 216 100.0
FAN22G1848 Fragaria x ananassa HOM05D003928 ORTHO05D007133 1.5e-92 343.2 202 97.5
FAN04G0052 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.2e-92 342.0 202 97.0
FAN08G0705 Fragaria x ananassa HOM05D003928 ORTHO05D007133 6.8e-58 228.0 119 95.8
FvH4_5g11850 Fragaria vesca HOM05D003928 ORTHO05D007133 2.0e-57 226.5 119 95.0
FAN18G2650 Fragaria x ananassa HOM05D003928 ORTHO05D007133 2.0e-57 226.5 119 95.0
FAN18G3471 Fragaria x ananassa HOM05D003928 ORTHO05D007133 2.0e-57 226.5 119 95.0
FAN13G0494 Fragaria x ananassa HOM05D003928 ORTHO05D007133 7.5e-57 224.6 119 95.0
RcHm_v2.0_Chr7g0185741 Rosa chinensis HOM05D003928 ORTHO05D007133 1.1e-55 220.7 118 91.5
Cfa019749 Carpinus fangiana HOM05D003928 ORTHO05D007133 6.0e-54 214.9 118 87.3
Haze_18702 Corylus avellana HOM05D003928 ORTHO05D007133 7.8e-54 214.5 118 86.4
CiPaw.16G051800 Carya illinoinensis HOM05D003928 ORTHO05D007133 2.3e-53 213.0 118 85.6
MD14G1228200 Malus domestica HOM05D003928 ORTHO05D007133 3.9e-53 212.2 119 86.6
MD06G1218100 Malus domestica HOM05D003928 ORTHO05D007133 5.1e-53 211.8 119 84.9
Prupe.5G223200 Prunus persica HOM05D003928 ORTHO05D007133 6.6e-53 211.5 119 84.9
Atru.chr9.882 Acer truncatum HOM05D003928 ORTHO05D007133 1.1e-52 210.7 119 84.0
Lj5A151T51 Lonicera japonica HOM05D003928 ORTHO05D007133 9.5e-52 207.6 119 81.5
QL10p025782 Quercus lobata HOM05D003928 ORTHO05D007133 9.5e-52 207.6 119 82.4
Thecc.03G037800 Theobroma cacao HOM05D003928 ORTHO05D007133 1.2e-51 207.2 119 82.4
Ciclev10018705m.g Citrus clementina HOM05D003928 ORTHO05D007133 1.6e-51 206.8 119 84.0
Eucgr.K02232 Eucalyptus grandis HOM05D003928 ORTHO05D007133 1.6e-51 206.8 119 81.5
PGR044G0175 Punica granatum HOM05D003928 ORTHO05D007133 3.6e-51 205.7 119 81.5
GSVIVG01008318001 Vitis vinifera HOM05D003928 ORTHO05D007133 4.7e-51 205.3 119 83.2
TWI81G1044 Tripterygium wilfordii HOM05D003928 ORTHO05D007133 6.2e-51 204.9 119 80.7
Actinidia02661 Actinidia chinensis HOM05D003928 ORTHO05D007133 8.1e-51 204.5 118 78.8
Nitab4.5_0008233g0010 Nicotiana tabacum HOM05D003928 ORTHO05D007133 1.4e-50 203.8 119 80.7
Dinv15697 Davidia involucrata HOM05D003928 ORTHO05D007133 1.8e-50 203.4 129 76.7
Duzib068G1360 Durio zibethinus HOM05D003928 ORTHO05D007133 1.8e-50 203.4 119 81.5
Duzib205G0965 Durio zibethinus HOM05D003928 ORTHO05D007133 2.3e-50 203.0 119 81.5
Sabra15G0040100 Salix brachista HOM05D003928 ORTHO05D007133 2.3e-50 203.0 119 79.0
Solyc03g119270.1 Solanum lycopersicum HOM05D003928 ORTHO05D007133 3.1e-50 202.6 119 79.8
Sopen03g038150 Solanum pennellii HOM05D003928 ORTHO05D007133 3.1e-50 202.6 119 79.8
Duzib084G0756 Durio zibethinus HOM05D003928 ORTHO05D007133 4.0e-50 202.2 118 82.2
Manes.05G124730 Manihot esculenta HOM05D003928 ORTHO05D007133 4.0e-50 202.2 130 75.4
Rhsim08G0131700 Rhododendron simsii HOM05D003928 ORTHO05D007133 5.2e-50 201.8 119 77.3
PGSC0003DMG400005647 Solanum tuberosum HOM05D003928 ORTHO05D007133 5.2e-50 201.8 119 79.0
Cpa.g.sc3.486 Carica papaya HOM05D003928 ORTHO05D007133 6.8e-50 201.4 119 82.4
Medtr8g104380 Medicago truncatula HOM05D003928 ORTHO05D007133 6.8e-50 201.4 119 78.2
TWI15G0374 Tripterygium wilfordii HOM05D003928 ORTHO05D007133 6.8e-50 201.4 119 79.0
Potri.015G045600 Populus trichocarpa HOM05D003928 ORTHO05D007133 8.9e-50 201.1 119 78.2
FAN06G3234 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.2e-49 200.7 131 95.4
Psat7g010840 Pisum sativum HOM05D003928 ORTHO05D007133 1.2e-49 200.7 119 78.2
Phvul.002G317900 Phaseolus vulgaris HOM05D003928 ORTHO05D007133 2.0e-49 199.9 130 72.3
CAN.G1425.25 Capsicum annuum HOM05D003928 ORTHO05D007133 2.6e-49 199.5 121 76.9
Glyma.05G237400 Glycine max HOM05D003928 ORTHO05D007133 2.6e-49 199.5 130 71.5
Ca_25458_v3 Cicer arietinum L. HOM05D003928 ORTHO05D007133 4.4e-49 198.7 119 77.3
CSS0042498 Camellia sinensis var. sinensis HOM05D003928 ORTHO05D007133 5.8e-49 198.4 119 78.2
Potri.012G055000 Populus trichocarpa HOM05D003928 ORTHO05D007133 7.6e-49 198.0 119 77.3
Sabra12G0038700 Salix brachista HOM05D003928 ORTHO05D007133 9.9e-49 197.6 122 75.4
CANSAT80G1256 Cannabis sativa HOM05D003928 ORTHO05D007133 1.3e-48 197.2 119 78.2
vmacro17703 Vaccinium macrocarpon HOM05D003928 ORTHO05D007133 1.3e-48 197.2 119 76.5
Nn6g34767 Nelumbo nucifera HOM05D003928 ORTHO05D007133 1.7e-48 196.8 117 78.6
Carub.0003s1806 Capsella rubella HOM05D003928 ORTHO05D007133 2.9e-48 196.1 120 77.5
VMungo0251G0737 Vigna mungo HOM05D003928 ORTHO05D007133 2.9e-48 196.1 130 70.0
Sed0028203 Sechium edule HOM05D003928 ORTHO05D007133 3.8e-48 195.7 119 78.2
Glyma.08G044600 Glycine max HOM05D003928 ORTHO05D007133 6.4e-48 194.9 129 69.8
Peaxi162Scf00683g00003 Petunia axillaris HOM05D003928 ORTHO05D007133 6.4e-48 194.9 123 75.6
Gohir.A12G266900 Gossypium hirsutum HOM05D003928 ORTHO05D007133 8.4e-48 194.5 119 79.8
Sc04g0003430 Simmondsia chinensis HOM05D003928 ORTHO05D007133 1.4e-47 193.7 119 76.5
SGA_v2.0_scaffold25G10975 Striga asiatica HOM05D003928 ORTHO05D007133 1.4e-47 193.7 119 76.5
MELO3C002096.2 Cucumis melo HOM05D003928 ORTHO05D007133 1.9e-47 193.4 119 77.3
CsaV3_1G006710 Cucumis sativus L. HOM05D003928 ORTHO05D007133 1.9e-47 193.4 119 77.3
Gohir.D12G267400 Gossypium hirsutum HOM05D003928 ORTHO05D007133 1.9e-47 193.4 119 79.0
Gorai.008G287400 Gossypium raimondii HOM05D003928 ORTHO05D007133 2.4e-47 193.0 119 79.0
MBI16_g28239_MAGBIO Magnolia biondii HOM05D003928 ORTHO05D007133 2.4e-47 193.0 119 74.8
Thhalv10020046m.g Eutrema salsugineum HOM05D003928 ORTHO05D007133 3.2e-47 192.6 119 76.5
AL1G55480 Arabidopsis lyrata HOM05D003928 ORTHO05D007133 5.4e-47 191.8 119 76.5
ClCG00G001070 Citrullus lanatus HOM05D003928 ORTHO05D007133 5.4e-47 191.8 119 75.6
ClCG04G011000 Citrullus lanatus HOM05D003928 ORTHO05D007133 5.4e-47 191.8 119 75.6
Carub.0001s3791 Capsella rubella HOM05D003928 ORTHO05D007133 1.2e-46 190.7 118 77.1
Lalb_Chr22g0353161 Lupinus albus HOM05D003928 ORTHO05D007133 2.1e-46 189.9 119 73.9
Aa31LG10G4780 Aethionema arabicum HOM05D003928 ORTHO05D007133 2.7e-46 189.5 119 75.6
AT1G48760 Arabidopsis thaliana HOM05D003928 ORTHO05D007133 2.7e-46 189.5 119 76.5
CARHR093630 Cardamine hirsuta HOM05D003928 ORTHO05D007133 2.7e-46 189.5 119 75.6
Lalb_Chr24g0397881 Lupinus albus HOM05D003928 ORTHO05D007133 3.5e-46 189.1 118 76.3
BolC5t33475H Brassica oleracea HOM05D003928 ORTHO05D007133 4.6e-46 188.7 120 76.7
arahy.Tifrunner.gnm1.ann1.2TSU5I Arachis hypogaea HOM05D003928 ORTHO05D007133 6.0e-46 188.3 119 72.3
THA.LOC104820383 Tarenaya hassleriana HOM05D003928 ORTHO05D007133 6.0e-46 188.3 119 75.6
BraA05t21975Z Brassica rapa HOM05D003928 ORTHO05D007133 7.8e-46 188.0 120 76.7
TPR.G32710 Trifolium pratense HOM05D003928 ORTHO05D007133 7.8e-46 188.0 119 72.3
C05p47670 Brassica napus HOM05D003928 ORTHO05D007133 1.7e-45 186.8 120 75.8
Cc04_g07000 Coffea canephora HOM05D003928 ORTHO05D007133 1.7e-45 186.8 119 75.6
Migut.I00406 Erythranthe guttata HOM05D003928 ORTHO05D007133 2.3e-45 186.4 119 71.4
Aa31LG8G5140 Aethionema arabicum HOM05D003928 ORTHO05D007133 3.0e-45 186.0 118 73.7
A05p31370 Brassica napus HOM05D003928 ORTHO05D007133 3.0e-45 186.0 120 75.8
Aqoxy3G00241 Aquilegia oxysepala HOM05D003928 ORTHO05D007133 5.1e-45 185.3 119 74.8
AL3G31520 Arabidopsis lyrata HOM05D003928 ORTHO05D007133 6.6e-45 184.9 119 76.5
BraA05t20995Z Brassica rapa HOM05D003928 ORTHO05D007133 8.6e-45 184.5 118 73.7
BcaC05g27555 Brassica carinata HOM05D003928 ORTHO05D007133 1.1e-44 184.1 118 73.7
C05p35390 Brassica napus HOM05D003928 ORTHO05D007133 1.1e-44 184.1 118 73.7
CARHR038730 Cardamine hirsuta HOM05D003928 ORTHO05D007133 1.1e-44 184.1 119 73.1
Sp3g16410 Schrenkiella parvula HOM05D003928 ORTHO05D007133 1.1e-44 184.1 119 74.8
A05p20900 Brassica napus HOM05D003928 ORTHO05D007133 3.3e-44 182.6 118 72.9
Lsat_1_v5_gn_8_145181 Lactuca sativa HOM05D003928 ORTHO05D007133 3.3e-44 182.6 119 73.1
Lj6g0007940 Lotus japonicus HOM05D003928 ORTHO05D007133 5.6e-44 181.8 133 65.4
CDE04G1035 Ceratophyllum demersum HOM05D003928 ORTHO05D007133 7.3e-44 181.4 117 73.5
Sp1g35680 Schrenkiella parvula HOM05D003928 ORTHO05D007133 9.6e-44 181.0 118 73.7
DCAR_023214 Daucus carota HOM05D003928 ORTHO05D007133 3.6e-43 179.1 116 71.6
ECA233G2967 Erigeron canadensis HOM05D003928 ORTHO05D007133 1.4e-42 177.2 119 69.7
AUR62033807 Chenopodium quinoa HOM05D003928 ORTHO05D007133 1.8e-42 176.8 119 72.3
ATR1125G015 Amborella trichopoda HOM05D003928 ORTHO05D007133 2.4e-42 176.4 118 72.0
AUR62029899 Chenopodium quinoa HOM05D003928 ORTHO05D007133 2.4e-42 176.4 119 72.3
SHI26956 Sapria himalayana HOM05D003928 ORTHO05D007133 8.9e-42 174.5 119 67.2
SEGI_04687 Sequoiadendron giganteum HOM05D003928 ORTHO05D007133 1.2e-41 174.1 119 66.4
HanXRQChr17g0558301 Helianthus annuus HOM05D003928 ORTHO05D007133 1.5e-41 173.7 119 70.6
Ah.15g090400 Amaranthus hybridus HOM05D003928 ORTHO05D007133 2.6e-41 172.9 119 69.7
PSO017G5964 Papaver somniferum HOM05D003928 ORTHO05D007133 3.4e-41 172.6 123 68.3
EL10Ac4g08652 Beta vulgaris HOM05D003928 ORTHO05D007133 9.9e-41 171.0 119 68.9
PSO478G2973 Papaver somniferum HOM05D003928 ORTHO05D007133 1.9e-39 166.8 123 67.5
AagrBONN_evm.TU.Sc2ySwM_368.2497 Anthoceros agrestis HOM05D003928 ORTHO05D007133 1.0e-37 161.0 128 61.7
COL.COLO4_05244 Corchorus olitorius HOM05D003928 ORTHO05D007133 7.3e-36 154.8 95 77.9
Hund10276 Selenicereus undatus HOM05D003928 ORTHO05D007133 9.6e-36 154.5 102 71.6
FAN09G3858 Fragaria x ananassa HOM05D001482 ORTHO05D001499 1.4e-34 150.6 103 95.1
Oeu000997.1 Olea europaea HOM05D003928 ORTHO05D007133 3.1e-34 149.4 88 80.7
Mapoly0001s0514 Marchantia polymorpha HOM05D003928 ORTHO05D007133 1.5e-33 147.1 137 55.5
HPP92_023134 Vanilla planifolia HOM05D003928 ORTHO05D007133 1.1e-31 141.0 120 54.2
Nitab4.5_0003433g0050 Nicotiana tabacum HOM05D003928 ORTHO05D007133 1.4e-31 140.6 87 72.4
MBI16_g33214_MAGBIO Magnolia biondii HOM05D003928 ORTHO05D007133 2.3e-29 133.3 97 68.0
SMO367G0105 Selaginella moellendorffii HOM05D003928 ORTHO05D007133 1.3e-27 127.5 116 54.3
MCO13G008 Micromonas commoda HOM05D003928 ORTHO05D007133 1.6e-27 127.1 130 48.5
Os01g0512200 Oryza sativa ssp. japonica HOM05D003928 ORTHO05D007133 1.6e-27 127.1 116 51.7
Zm00001eb137140 Zea mays HOM05D003928 ORTHO05D007133 4.8e-27 125.6 125 48.8
Zm00001eb410080 Zea mays HOM05D003928 ORTHO05D007133 4.0e-26 122.5 131 46.6
FAN03G2941 Fragaria x ananassa HOM05D003928 ORTHO05D011217 2.6e-25 119.8 82 96.3
FAN18G2564 Fragaria x ananassa HOM05D018240 ORTHO05D025480 4.5e-25 119.0 131 58.0
Pp3c5_28670 Physcomitrium patens HOM05D003928 ORTHO05D007133 2.2e-24 116.7 117 49.6
CBR_g44606 Chara braunii HOM05D003928 ORTHO05D007133 1.1e-23 114.4 127 42.5
FAN02G2434 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.5e-22 109.4 53 98.1
FAN05G1192 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.5e-22 109.4 53 98.1
FAN05G4607 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.5e-22 109.4 53 98.1
FAN15G1605 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.5e-22 109.4 53 98.1
FAN19G0479 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.5e-22 109.4 53 98.1
FAN23G3050 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.5e-22 109.4 53 98.1
FAN26G1271 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.5e-22 109.4 53 98.1
FAN28G0445 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.5e-22 109.4 53 98.1
FAN28G1941 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.5e-22 109.4 53 98.1
FAN15G0737 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.0e-21 107.8 53 96.2
FAN16G3240 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.0e-21 107.8 53 96.2
FAN17G0835 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.0e-21 107.8 53 96.2
FAN23G1773 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.3e-21 107.5 53 96.2
FAN04G1981 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.8e-21 107.1 79 91.1
Actinidia19834 Actinidia chinensis HOM05D003928 ORTHO05D007133 3.0e-21 106.3 68 70.6
FAN15G0613 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.0e-21 106.3 53 94.3
FAN22G1342 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.0e-21 106.3 53 96.2
FAN04G0282 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.9e-21 105.9 53 96.2
FAN12G3315 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.9e-21 105.9 53 96.2
FAN13G3114 Fragaria x ananassa HOM05D003928 ORTHO05D011217 3.9e-21 105.9 53 96.2
FAN18G4049 Fragaria x ananassa HOM05D003928 ORTHO05D011217 8.7e-21 104.8 53 94.3
FAN19G3046 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.1e-20 104.4 53 94.3
FAN13G0119 Fragaria x ananassa HOM05D003928 ORTHO05D011217 4.3e-20 102.4 53 90.6
FAN19G3228 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.3e-19 100.9 53 88.7
FAN19G2454 Fragaria x ananassa HOM05D003928 ORTHO05D011217 5.3e-18 95.5 52 86.5
PRCOL_00004580 Prasinoderma coloniale HOM05D003928 ORTHO05D007133 3.8e-16 89.4 113 42.5
FAN14G2461 Fragaria x ananassa HOM05D003928 ORTHO05D011217 4.9e-16 89.0 53 83.0
FvH4_3g34152 Fragaria vesca HOM05D003928 ORTHO05D035439 1.4e-15 87.4 52 80.8
FAN01G2153 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.6e-14 84.0 53 77.4
FAN01G2725 Fragaria x ananassa HOM05D003928 ORTHO05D011217 1.6e-14 84.0 53 77.4
FvH4_7g24551 Fragaria vesca HOM05D003928 ORTHO05D011217 6.0e-14 82.0 85 75.3
FvH4_2g13381 Fragaria vesca HOM05D003928 ORTHO05D009025 7.4e-12 75.1 77 57.1
FAN02G0702 Fragaria x ananassa HOM05D003928 ORTHO05D011217 2.1e-11 73.6 51 74.5
FAN22G1480 Fragaria x ananassa HOM05D003928 ORTHO05D011217 8.2e-11 71.6 51 72.5
FAN22G1762 Fragaria x ananassa HOM05D003928 ORTHO05D007133 2.9e-08 63.2 31 90.3
FvH4_5g13181 Fragaria vesca HOM05D002190 ORTHO05D016291 7.2e-07 58.5 37 73.0


User provided reference genes

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