Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0721 Fragaria x ananassa HOM05D001049 ORTHO05D019174 2.6e-225 785.0 395 100.0
FAN01G0915 Fragaria x ananassa HOM05D001049 ORTHO05D019174 2.9e-208 728.4 418 89.5
FAN03G1095 Fragaria x ananassa HOM05D001049 ORTHO05D019174 1.3e-144 516.9 395 73.2
RcHm_v2.0_Chr2g0162931 Rosa chinensis HOM05D001049 ORTHO05D005951 2.4e-56 223.8 243 55.6
FAN05G1438 Fragaria x ananassa HOM05D001049 ORTHO05D005951 8.9e-56 221.9 243 54.7
FvH4_6g45220 Fragaria vesca HOM05D001049 ORTHO05D005951 1.9e-53 214.2 247 52.2
FAN02G0215 Fragaria x ananassa HOM05D001049 ORTHO05D005951 3.0e-51 206.8 239 52.7
FAN11G1854 Fragaria x ananassa HOM05D001049 ORTHO05D019129 5.6e-50 202.6 150 72.7
MD09G1087200 Malus domestica HOM05D001049 ORTHO05D005951 5.6e-50 202.6 243 53.1
FvH4_1g29080 Fragaria vesca HOM05D001049 ORTHO05D019174 1.1e-40 171.8 158 65.2
Manes.01G109200 Manihot esculenta HOM05D001049 ORTHO05D005951 3.1e-40 170.2 241 46.9
FvH4_7g05330 Fragaria vesca HOM05D001049 ORTHO05D019129 2.9e-38 163.7 141 67.4
CSS0032537 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D005951 8.4e-38 162.2 243 44.9
FvH4_3g26990 Fragaria vesca HOM05D001049 ORTHO05D019129 1.1e-37 161.8 116 71.6
C03p40010 Brassica napus HOM05D001049 ORTHO05D005951 5.4e-37 159.5 244 43.0
BcaC01g04452 Brassica carinata HOM05D001049 ORTHO05D005951 9.3e-37 158.7 244 43.0
BolC3t16266H Brassica oleracea HOM05D001049 ORTHO05D005951 9.3e-37 158.7 244 43.0
BcaC01g04542 Brassica carinata HOM05D001049 ORTHO05D005951 2.1e-36 157.5 242 44.6
Dinv34836 Davidia involucrata HOM05D001049 ORTHO05D005951 2.1e-36 157.5 224 44.6
Ciclev10000583m.g Citrus clementina HOM05D001049 ORTHO05D005951 2.7e-36 157.1 245 43.7
Prupe.3G238300 Prunus persica HOM05D001049 ORTHO05D005951 4.6e-36 156.4 187 50.3
A03p32880 Brassica napus HOM05D001049 ORTHO05D005951 7.9e-36 155.6 242 43.4
BraA03t12457Z Brassica rapa HOM05D001049 ORTHO05D005951 7.9e-36 155.6 243 42.8
Sp3g01340 Schrenkiella parvula HOM05D001049 ORTHO05D005951 3.0e-35 153.7 246 42.7
BolC5t33015H Brassica oleracea HOM05D001049 ORTHO05D005951 3.9e-35 153.3 242 44.6
MD12G1122800 Malus domestica HOM05D001049 ORTHO05D005951 6.7e-35 152.5 253 43.9
Potri.004G101100 Populus trichocarpa HOM05D001049 ORTHO05D005951 6.7e-35 152.5 246 42.7
vmacro05566 Vaccinium macrocarpon HOM05D001049 ORTHO05D005951 6.7e-35 152.5 257 42.0
GSVIVG01031054001 Vitis vinifera HOM05D001049 ORTHO05D005951 8.7e-35 152.1 253 41.5
AL3G11560 Arabidopsis lyrata HOM05D001049 ORTHO05D005951 1.1e-34 151.8 243 41.6
Thecc.09G259800 Theobroma cacao HOM05D001049 ORTHO05D005951 1.9e-34 151.0 244 41.8
MD09G1086400 Malus domestica HOM05D001049 ORTHO05D005951 2.5e-34 150.6 195 49.7
Atru.chr7.1178 Acer truncatum HOM05D001049 ORTHO05D005951 3.3e-34 150.2 341 37.5
AT3G02280 Arabidopsis thaliana HOM05D001049 ORTHO05D005951 5.6e-34 149.4 243 41.6
TWI74G0592 Tripterygium wilfordii HOM05D001049 ORTHO05D005951 9.6e-34 148.7 250 38.8
BcaB06g26057 Brassica carinata HOM05D001049 ORTHO05D005951 1.6e-33 147.9 243 40.3
FAN14G1155 Fragaria x ananassa HOM05D001049 ORTHO05D005951 2.1e-33 147.5 183 49.2
Aa31LG5G12810 Aethionema arabicum HOM05D001049 ORTHO05D005951 2.8e-33 147.1 249 40.6
Thhalv10011322m.g Eutrema salsugineum HOM05D001049 ORTHO05D005951 2.8e-33 147.1 242 41.3
Hma1.2p1_0550F.1_g177330 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 2.8e-33 147.1 243 41.6
THA.LOC104820980 Tarenaya hassleriana HOM05D001049 ORTHO05D005951 2.8e-33 147.1 242 41.7
Gohir.D07G121000 Gossypium hirsutum HOM05D001049 ORTHO05D005951 4.8e-33 146.4 342 38.0
Sed0012519 Sechium edule HOM05D001049 ORTHO05D005951 4.8e-33 146.4 244 41.8
Gorai.001G130600 Gossypium raimondii HOM05D001049 ORTHO05D005951 1.8e-32 144.4 342 37.7
ECA236G0274 Erigeron canadensis HOM05D001049 ORTHO05D005951 2.4e-32 144.1 243 39.9
CANSAT64G1724 Cannabis sativa HOM05D001049 ORTHO05D005951 6.9e-32 142.5 247 41.7
Lalb_Chr10g0091161 Lupinus albus HOM05D001049 ORTHO05D005951 6.9e-32 142.5 240 41.7
arahy.Tifrunner.gnm1.ann1.NBV3FR Arachis hypogaea HOM05D001049 ORTHO05D005951 9.0e-32 142.1 254 39.8
arahy.Tifrunner.gnm1.ann1.YPBB19 Arachis hypogaea HOM05D001049 ORTHO05D005951 9.0e-32 142.1 254 39.8
Carub.0003s2478 Capsella rubella HOM05D001049 ORTHO05D005951 9.0e-32 142.1 243 39.5
CiPaw.04G041100 Carya illinoinensis HOM05D001049 ORTHO05D005951 9.0e-32 142.1 244 41.0
Cc07_g08880 Coffea canephora HOM05D001049 ORTHO05D005951 9.0e-32 142.1 259 40.2
Gohir.A07G116600 Gossypium hirsutum HOM05D001049 ORTHO05D005951 1.5e-31 141.4 345 37.4
Eucgr.J01497 Eucalyptus grandis HOM05D001049 ORTHO05D005951 2.6e-31 140.6 249 40.6
Aqoxy3G03945 Aquilegia oxysepala HOM05D001049 ORTHO05D005951 7.6e-31 139.0 247 38.9
EL10Ac2g04590 Beta vulgaris HOM05D001049 ORTHO05D005951 9.9e-31 138.7 240 41.2
Lsat_1_v5_gn_9_32960 Lactuca sativa HOM05D001049 ORTHO05D005951 1.3e-30 138.3 243 42.4
PGR042G0664 Punica granatum HOM05D001049 ORTHO05D005951 1.3e-30 138.3 225 41.8
AUR62008979 Chenopodium quinoa HOM05D001049 ORTHO05D005951 2.2e-30 137.5 244 39.8
Glyma.18G297800 Glycine max HOM05D001049 ORTHO05D005951 2.9e-30 137.1 252 37.3
VMungo1383G0137 Vigna mungo HOM05D001049 ORTHO05D005951 2.9e-30 137.1 240 39.6
CsaV3_4G004300 Cucumis sativus L. HOM05D001049 ORTHO05D005951 4.9e-30 136.3 255 39.2
HanXRQChr12g0376471 Helianthus annuus HOM05D001049 ORTHO05D005951 6.4e-30 136.0 241 39.4
CAN.G625.5 Capsicum annuum HOM05D001049 ORTHO05D005951 1.1e-29 135.2 257 38.9
Nn3g17797 Nelumbo nucifera HOM05D001049 ORTHO05D005951 1.4e-29 134.8 254 39.8
Migut.L00308 Erythranthe guttata HOM05D001049 ORTHO05D005951 1.9e-29 134.4 245 39.2
Psat3g206240 Pisum sativum HOM05D001049 ORTHO05D005951 2.5e-29 134.0 243 38.7
SGA_v2.0_scaffold114G32024 Striga asiatica HOM05D001049 ORTHO05D005951 7.1e-29 132.5 250 39.6
Ah.10g037600 Amaranthus hybridus HOM05D001049 ORTHO05D005951 9.3e-29 132.1 261 36.4
FAN14G2476 Fragaria x ananassa HOM05D001049 ORTHO05D005951 9.3e-29 132.1 215 47.0
Ca_04065_v3 Cicer arietinum L. HOM05D001049 ORTHO05D005951 1.2e-28 131.7 244 38.5
Medtr1g102950 Medicago truncatula HOM05D001049 ORTHO05D005951 2.7e-28 130.6 232 40.1
TAR629G0236 Trochodendron aralioides HOM05D001049 ORTHO05D005951 2.7e-28 130.6 244 36.9
FvH4_7g05331 Fragaria vesca HOM05D001049 ORTHO05D019174 3.5e-28 130.2 78 88.5
Solyc02g085820.3 Solanum lycopersicum HOM05D001049 ORTHO05D005951 3.5e-28 130.2 250 40.0
FAN18G0950 Fragaria x ananassa HOM05D001049 ORTHO05D019129 4.6e-28 129.8 65 89.2
C05p42860 Brassica napus HOM05D001049 ORTHO05D005951 6.0e-28 129.4 239 42.7
Sopen02g030510 Solanum pennellii HOM05D001049 ORTHO05D005951 6.0e-28 129.4 268 38.1
BcaC05g28235 Brassica carinata HOM05D001049 ORTHO05D005951 1.0e-27 128.6 239 42.7
Lj6g0008823 Lotus japonicus HOM05D001049 ORTHO05D005951 3.0e-27 127.1 241 39.0
PGSC0003DMG400012672 Solanum tuberosum HOM05D001049 ORTHO05D005951 3.0e-27 127.1 250 38.8
PSO566G0159 Papaver somniferum HOM05D001049 ORTHO05D005951 3.9e-27 126.7 243 37.0
Sabra04G0079000 Salix brachista HOM05D001049 ORTHO05D005951 6.7e-27 125.9 384 34.1
Lj6g0018247 Lotus japonicus HOM05D001049 ORTHO05D005951 8.7e-27 125.6 221 41.6
Medtr7g406970 Medicago truncatula HOM05D001049 ORTHO05D005951 8.7e-27 125.6 241 39.4
Phvul.008G004800 Phaseolus vulgaris HOM05D001049 ORTHO05D005951 1.1e-26 125.2 252 37.3
SalBow5G3175 Salvia bowleyana HOM05D001049 ORTHO05D005951 1.1e-26 125.2 249 38.6
Hund13726 Selenicereus undatus HOM05D001049 ORTHO05D005951 1.1e-26 125.2 280 33.2
TPR.G9733 Trifolium pratense HOM05D001049 ORTHO05D005951 1.1e-26 125.2 243 37.9
Lj1g0028233 Lotus japonicus HOM05D001049 ORTHO05D005951 2.5e-26 124.0 241 38.6
Medtr7g101180 Medicago truncatula HOM05D001049 ORTHO05D005951 2.5e-26 124.0 236 37.7
PSO782G4668 Papaver somniferum HOM05D001049 ORTHO05D005951 7.4e-26 122.5 239 36.0
Hma1.2p1_3581F.1_g336840 Hydrangea macrophylla HOM05D001049 ORTHO05D005951 9.6e-26 122.1 219 37.9
Sc11g0008260 Simmondsia chinensis HOM05D001049 ORTHO05D005951 2.8e-25 120.6 344 35.8
DCAR_029530 Daucus carota HOM05D001049 ORTHO05D005951 3.7e-25 120.2 238 37.0
COL.COLO4_25241 Corchorus olitorius HOM05D001049 ORTHO05D005951 6.2e-25 119.4 205 39.5
Peaxi162Scf00814g00241 Petunia axillaris HOM05D001049 ORTHO05D005951 1.4e-24 118.2 323 34.1
CDE05G0709 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 1.8e-24 117.9 252 37.3
CDE05G2905 Ceratophyllum demersum HOM05D001049 ORTHO05D005951 6.9e-24 115.9 304 35.9
Atru.chr13.1275 Acer truncatum HOM05D001049 ORTHO05D005951 1.5e-23 114.8 152 49.3
HPP92_005481 Vanilla planifolia HOM05D001049 ORTHO05D005951 2.6e-23 114.0 246 35.8
Duzib150G0039 Durio zibethinus HOM05D001049 ORTHO05D005951 1.0e-22 112.1 183 39.3
FAN19G0265 Fragaria x ananassa HOM05D001049 ORTHO05D019174 3.8e-22 110.2 73 80.8
Os01g0733600 Oryza sativa ssp. japonica HOM05D001049 ORTHO05D005951 1.9e-21 107.8 339 35.1
Zm00001eb154050 Zea mays HOM05D001049 ORTHO05D005951 1.9e-21 107.8 242 36.0
Cpa.g.sc179.4 Carica papaya HOM05D001049 ORTHO05D005951 1.2e-20 105.1 145 46.2
AUR62014524 Chenopodium quinoa HOM05D001049 ORTHO05D005951 1.6e-20 104.8 216 37.5
DCAR_019602 Daucus carota HOM05D001049 ORTHO05D005951 1.8e-19 101.3 242 36.0
Lj1g0012839 Lotus japonicus HOM05D001049 ORTHO05D005951 3.0e-19 100.5 208 35.6
Actinidia15879 Actinidia chinensis HOM05D001049 ORTHO05D005951 1.1e-18 98.6 126 47.6
Nitab4.5_0005199g0010 Nicotiana tabacum HOM05D001049 ORTHO05D005951 3.3e-18 97.1 272 32.4
Lj4C194T12 Lonicera japonica HOM05D001049 ORTHO05D005951 9.7e-18 95.5 200 36.0
CARHR076240 Cardamine hirsuta HOM05D001049 ORTHO05D005951 4.8e-17 93.2 184 37.5
SMO367G1106 Selaginella moellendorffii HOM05D001049 ORTHO05D005951 2.4e-16 90.9 232 34.1
Nitab4.5_0001569g0100 Nicotiana tabacum HOM05D001049 ORTHO05D005951 4.1e-16 90.1 285 32.6
DCAR_029529 Daucus carota HOM05D001049 ORTHO05D005951 6.9e-16 89.4 198 34.3
FAN09G1302 Fragaria x ananassa HOM05D001049 ORTHO05D199828 1.9e-13 81.3 64 64.1
Mapoly0012s0011 Marchantia polymorpha HOM05D001049 ORTHO05D005951 1.9e-13 81.3 261 28.4
ATR0564G081 Amborella trichopoda HOM05D001049 ORTHO05D005951 5.5e-13 79.7 96 51.0
AagrBONN_evm.TU.Sc2ySwM_340.441 Anthoceros agrestis HOM05D001049 ORTHO05D005951 1.8e-11 74.7 251 30.3
Pp3c9_18000 Physcomitrium patens HOM05D001049 ORTHO05D005951 6.7e-11 72.8 261 29.1
FvH4_5g10660 Fragaria vesca HOM05D001049 ORTHO05D019129 4.8e-09 66.6 39 82.1
MD09G1086700 Malus domestica HOM05D001049 ORTHO05D005951 5.3e-08 63.2 179 36.9
SHI03729 Sapria himalayana HOM05D001049 ORTHO05D019129 1.2e-07 62.0 31 90.3
SHI03732 Sapria himalayana HOM05D001049 ORTHO05D005951 1.5e-07 61.6 83 44.6
Actinidia15878 Actinidia chinensis HOM05D001049 ORTHO05D005951 3.4e-07 60.5 34 79.4
TAR183G0004 Trochodendron aralioides HOM05D001049 ORTHO05D005951 5.9e-07 59.7 43 62.8
GSVIVG01014385001 Vitis vinifera HOM05D001049 ORTHO05D005951 5.9e-07 59.7 34 79.4
QL02p051854 Quercus lobata HOM05D001049 ORTHO05D005951 1.0e-06 58.9 44 70.5
BcaC07g37699 Brassica carinata HOM05D001049 ORTHO05D005951 1.7e-06 58.2 33 75.8
BolC8t47349H Brassica oleracea HOM05D001049 ORTHO05D005951 1.7e-06 58.2 33 75.8
BolC8t48085H Brassica oleracea HOM05D001049 ORTHO05D005951 1.7e-06 58.2 33 75.8
AL777U10010 Arabidopsis lyrata HOM05D001049 ORTHO05D012773 2.9e-06 57.4 33 75.8


User provided reference genes

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