Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.1e-92 342.8 235 100.0
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 3.0e-91 339.0 235 99.1
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.0e-91 339.0 235 99.1
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 7.4e-90 334.3 238 98.3
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 3.2e-85 318.9 235 95.3
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 3.4e-71 272.3 241 85.5
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 2.4e-64 249.6 238 81.9
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 4.1e-64 248.8 238 81.9
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 6.9e-64 248.1 238 79.4
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 9.0e-64 247.7 233 81.5
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 4.5e-63 245.4 238 81.1
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 1.7e-62 243.4 238 79.0
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 1.7e-62 243.4 238 77.7
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 5.0e-62 241.9 243 80.2
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 6.5e-62 241.5 227 81.9
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 9.4e-61 237.7 233 78.1
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 9.4e-61 237.7 233 78.5
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 1.2e-60 237.3 240 79.2
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 1.6e-60 236.9 235 81.3
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 6.1e-60 235.0 250 65.2
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 5.1e-59 231.9 238 77.7
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 8.8e-59 231.1 234 76.9
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 3.3e-58 229.2 253 74.3
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 5.7e-58 228.4 234 76.9
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 7.4e-58 228.0 238 76.1
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 7.4e-58 228.0 234 76.9
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.3e-57 227.3 239 76.2
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 2.2e-57 226.5 238 75.2
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.8e-57 226.1 235 78.7
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 6.3e-57 224.9 240 75.4
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 1.8e-56 223.4 238 76.5
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.8e-56 223.4 238 75.2
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 2.4e-56 223.0 238 76.5
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 6.9e-56 221.5 215 79.5
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 9.1e-56 221.1 240 74.2
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.0e-55 219.9 227 77.1
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 2.0e-55 219.9 217 78.8
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 3.4e-55 219.2 154 74.0
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 3.4e-55 219.2 219 78.5
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 1.7e-54 216.9 242 74.4
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 2.9e-54 216.1 238 74.8
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 2.9e-54 216.1 238 75.2
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 3.8e-54 215.7 238 74.8
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.1e-53 214.2 262 57.6
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 4.2e-53 212.2 238 73.1
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 7.2e-53 211.5 239 73.6
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.4e-53 211.1 233 75.5
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.6e-52 210.3 183 86.3
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 4.7e-52 208.8 237 73.8
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 6.1e-52 208.4 238 72.7
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 6.1e-52 208.4 212 81.1
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.4e-51 207.2 184 87.5
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 1.8e-51 206.8 184 87.5
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 3.0e-51 206.1 184 85.9
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 3.0e-51 206.1 234 71.8
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 2.0e-50 203.4 240 70.8
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 2.6e-50 203.0 184 88.0
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 3.3e-50 202.6 184 87.0
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 4.4e-50 202.2 212 78.8
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.7e-50 201.8 184 86.4
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 5.7e-50 201.8 181 87.3
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 7.4e-50 201.4 241 72.2
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 9.7e-50 201.1 184 87.5
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.8e-49 199.5 184 85.9
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 2.8e-49 199.5 237 72.2
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 6.3e-49 198.4 190 58.9
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 6.3e-49 198.4 190 58.9
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 8.2e-49 198.0 183 85.8
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.1e-48 197.6 201 80.1
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 1.1e-48 197.6 236 69.5
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.4e-48 197.2 210 77.1
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.8e-48 196.8 184 57.6
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 2.4e-48 196.4 244 72.1
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.1e-48 196.1 230 70.9
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 5.3e-48 195.3 223 74.0
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 7.0e-48 194.9 154 64.9
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.0e-48 194.9 238 71.0
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 9.1e-48 194.5 198 80.3
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 2.0e-47 193.4 199 79.9
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 3.5e-47 192.6 230 72.2
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 7.7e-47 191.4 213 76.1
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 1.0e-46 191.0 210 77.6
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 1.0e-46 191.0 229 71.6
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.7e-46 190.3 234 72.2
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.7e-46 190.3 157 98.7
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 2.9e-46 189.5 236 70.3
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 5.0e-46 188.7 237 70.5
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 6.5e-46 188.3 207 77.8
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 8.5e-46 188.0 184 66.3
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.9e-45 186.8 208 76.4
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 1.9e-45 186.8 229 71.6
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.9e-45 186.8 184 82.6
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 1.9e-45 186.8 206 76.2
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 1.9e-45 186.8 184 80.4
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 3.2e-45 186.0 207 77.3
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 3.2e-45 186.0 207 77.3
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 4.2e-45 185.7 212 77.4
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 4.2e-45 185.7 212 77.8
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 7.2e-45 184.9 182 83.0
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 9.4e-45 184.5 213 74.6
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 9.4e-45 184.5 184 83.2
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 1.2e-44 184.1 206 76.2
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 1.6e-44 183.7 183 84.2
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 2.7e-44 183.0 217 71.0
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 6.1e-44 181.8 205 76.6
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 1.4e-43 180.6 227 59.5
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.3e-43 179.9 136 66.9
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.0e-43 179.1 136 67.6
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.7e-43 178.3 136 67.6
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.7e-43 178.3 136 67.6
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.3e-42 176.0 184 53.8
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.4e-42 175.6 136 66.2
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-41 174.1 136 66.2
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.8e-41 172.9 136 66.2
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.8e-41 172.9 227 69.6
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 2.0e-39 166.8 98 79.6
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 2.7e-39 166.4 166 86.1
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 7.7e-39 164.9 201 69.7
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 1.7e-38 163.7 229 66.4
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.0e-38 162.2 182 54.9
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.4e-35 154.1 240 57.9
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-34 150.6 234 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 4.4e-34 149.1 105 68.6
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 1.4e-32 144.1 240 62.9
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.4e-32 143.3 94 83.0
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 3.5e-31 139.4 105 66.7
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 7.7e-31 138.3 156 79.5
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.2e-29 131.7 77 81.8
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 8.0e-20 101.7 65 72.3
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 7.3e-13 78.6 110 83.6
FAN15G0173 Fragaria x ananassa HOM05D008624 ORTHO05D007117 1.8e-11 73.9 63 65.1
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 2.6e-10 70.1 209 36.4
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 4.9e-09 65.9 81 54.3


User provided reference genes

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