Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1767.3 931 100.0
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1733.4 931 97.6
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 0.0e+00 1728.8 931 96.9
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1725.7 931 96.8
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1645.6 922 93.5
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1577.0 931 90.0
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 0.0e+00 1204.5 931 69.7
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 0.0e+00 1167.1 933 67.2
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 2.7e-305 1052.0 879 61.1
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 8.2e-302 1040.4 876 60.3
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 4.7e-289 998.0 873 59.0
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.4e-288 996.5 916 56.8
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 5.4e-285 984.6 947 59.1
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.5e-282 976.5 877 56.8
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.9e-274 949.5 947 58.0
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 9.5e-274 947.2 876 55.3
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-273 946.8 947 57.6
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 3.7e-270 935.3 874 54.1
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 8.3e-270 934.1 880 54.5
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 8.3e-270 934.1 879 54.0
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.1e-269 933.7 878 55.5
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.4e-269 932.6 880 54.3
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 5.4e-269 931.4 874 54.2
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 7.0e-269 931.0 888 53.7
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 4.6e-268 928.3 874 54.5
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 3.9e-267 925.2 877 54.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.5e-266 923.3 892 55.3
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.9e-266 922.9 877 54.5
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 4.3e-266 921.8 877 54.5
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.8e-264 916.4 874 54.6
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.3e-264 916.0 876 54.6
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 1.1e-261 907.1 890 55.1
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.1e-261 907.1 882 53.5
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 1.9e-261 906.4 879 54.6
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 4.1e-261 905.2 881 52.9
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.1e-260 902.9 849 55.7
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 4.6e-260 901.7 883 54.9
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.3e-259 899.4 943 56.3
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.4e-256 890.2 849 55.2
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.3e-256 889.4 881 53.8
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 4.4e-255 885.2 879 52.8
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 9.9e-255 884.0 850 54.6
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.1e-252 876.3 849 54.5
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.7e-251 873.2 874 51.7
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 3.9e-251 872.1 877 52.3
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 5.1e-251 871.7 873 51.9
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 6.6e-251 871.3 849 54.9
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 3.3e-250 869.0 759 58.0
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 9.6e-250 867.5 907 51.3
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.0e-248 862.1 876 51.8
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.2e-247 860.5 934 49.4
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 3.4e-247 859.0 947 53.6
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 9.9e-247 857.4 880 51.5
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 5.6e-242 841.6 875 51.9
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 5.6e-242 841.6 874 52.4
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.6e-242 840.9 889 50.6
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 2.8e-241 839.3 876 51.0
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 4.8e-241 838.6 876 51.6
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 6.9e-240 834.7 832 52.4
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 9.9e-239 830.9 884 51.1
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 4.9e-238 828.6 908 50.8
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.7e-236 822.8 886 50.8
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.0e-235 820.8 872 50.7
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 6.6e-235 818.1 770 56.8
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.5e-234 816.2 875 49.5
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.1e-232 810.8 897 49.6
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.0e-231 806.6 851 51.9
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.3e-227 793.1 886 50.1
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.8e-225 786.2 865 47.7
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.4e-224 783.9 942 45.6
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 2.2e-222 776.5 907 47.1
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 3.5e-220 769.2 881 48.6
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 3.5e-220 769.2 904 47.1
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 2.2e-214 750.0 848 49.8
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.9e-210 736.9 806 55.5
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 3.4e-207 726.1 876 47.9
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 8.5e-206 721.5 852 48.0
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.1e-205 721.1 871 44.1
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 4.2e-205 719.2 852 44.6
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 2.7e-204 716.5 387 93.0
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.9e-204 714.9 865 44.2
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.7e-201 706.1 889 45.1
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 5.5e-197 692.2 876 45.2
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 7.9e-196 688.3 882 42.6
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.1e-194 684.5 1346 34.8
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.6e-194 683.3 851 46.4
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.7e-193 679.5 865 43.7
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.2e-190 670.2 860 45.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.6e-183 647.5 830 42.9
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.2e-180 637.9 865 43.1
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 4.7e-180 636.0 851 44.2
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 4.7e-180 636.0 677 51.6
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 6.1e-180 635.6 854 43.1
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 6.1e-180 635.6 854 43.1
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.6e-178 630.2 855 43.2
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 3.4e-178 629.8 846 43.4
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 5.7e-178 629.0 862 42.7
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 9.8e-178 628.2 854 42.4
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 1.3e-177 627.9 854 42.3
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.7e-177 627.5 854 42.4
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 9.1e-176 621.7 850 42.5
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 6.5e-174 615.5 1378 32.6
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 1.5e-173 614.4 850 42.0
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 2.5e-173 613.6 757 46.0
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 8.0e-172 608.6 876 39.7
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.3e-171 607.1 899 39.5
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.7e-170 602.4 523 59.3
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.4e-168 597.8 855 41.9
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 4.5e-167 592.8 705 44.5
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 4.4e-162 576.2 865 40.2
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.9e-158 563.1 895 37.8
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.2e-153 547.4 877 40.3
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 4.4e-146 523.1 869 36.8
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 7.5e-146 522.3 597 50.1
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 5.4e-144 516.2 464 57.3
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 8.6e-142 508.8 409 62.6
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.2e-139 499.6 410 61.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 4.9e-137 493.0 310 78.1
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.4e-129 466.1 419 56.3
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 3.2e-128 463.8 652 41.9
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.3e-117 427.2 336 64.3
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.2e-111 408.7 320 62.5
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 4.8e-100 370.2 446 46.6
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.3e-97 362.1 789 32.4
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.3e-97 362.1 1086 26.7
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 3.8e-97 360.5 388 50.8
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 8.7e-94 349.4 510 41.8
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 8.7e-94 349.4 386 49.7
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 4.1e-91 340.5 350 52.3
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.0e-86 325.9 363 48.8
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.7e-84 317.4 382 45.0
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.8e-83 315.1 470 39.4
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.2e-80 303.9 502 38.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.2e-80 303.9 631 34.2
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 2.3e-78 298.1 271 56.5
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.2e-69 269.2 416 36.5
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 1.2e-63 249.2 182 64.8
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.1e-63 248.4 347 42.4
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 5.2e-62 243.8 240 49.6
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 3.1e-59 234.6 283 43.5
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 2.5e-56 224.9 277 46.9
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.4e-54 219.2 173 63.0
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 3.4e-53 214.5 179 60.3
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 8.6e-49 199.9 330 35.8
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-45 189.1 350 34.9
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 4.4e-45 187.6 361 31.6
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.4e-43 182.6 468 34.0
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 4.7e-39 167.5 139 59.7
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.7e-39 167.5 146 58.2
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 3.1e-38 164.9 158 56.3
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 1.4e-35 156.0 203 46.3
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 7.0e-35 153.7 131 59.5
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 3.9e-33 147.9 252 35.7
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.3e-32 144.8 118 60.2
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.6e-31 142.5 151 47.7
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.7e-31 141.0 241 45.2
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 2.9e-28 131.7 103 62.1
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 8.3e-28 130.2 208 38.0
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.4e-27 128.6 176 40.9
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 3.2e-27 128.3 149 45.0
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 7.1e-27 127.1 88 62.5
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.0e-25 123.2 89 66.3
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 2.3e-25 122.1 128 49.2
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.3e-24 117.9 125 51.2
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 9.5e-24 116.7 85 63.5
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 4.7e-23 114.4 139 63.3
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 2.4e-22 112.1 127 43.3
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 3.1e-22 111.7 81 66.7
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 8.9e-22 110.2 79 65.8
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.7e-18 98.6 160 36.9
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 6.0e-18 97.4 92 46.7
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 1.0e-17 96.7 103 48.5
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 8.1e-15 87.0 145 36.6
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 5.8e-13 80.9 96 38.5
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.9e-12 77.8 59 57.6
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 6.0e-10 70.9 90 38.9
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 7.3e-08 63.9 53 56.6
Pp3c11_22970 Physcomitrium patens HOM05D003301 ORTHO05D003665 1.6e-07 62.8 166 28.9
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 3.6e-07 61.6 82 48.8
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 3.6e-07 61.6 160 26.9
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 1.4e-06 59.7 62 51.6
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 2.4e-06 58.9 257 23.0
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 2.4e-06 58.9 96 34.4
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 2.4e-06 58.9 73 42.5
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 2.4e-06 58.9 84 44.0
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 5.3e-06 57.8 254 24.0


User provided reference genes

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