Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.9e-59 231.9 134 100.0
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 1.8e-56 222.6 144 92.4
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.8e-56 222.6 144 88.2
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.8e-56 222.6 144 92.4
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.2e-54 215.7 146 88.4
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 5.2e-48 194.5 146 79.5
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 2.3e-27 125.9 149 57.7
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 1.6e-20 103.2 64 78.1
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 3.5e-20 102.1 66 75.8
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 1.1e-18 97.1 66 74.2
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 1.5e-18 96.7 143 43.4
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 4.3e-18 95.1 135 48.1
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 9.5e-18 94.0 117 53.8
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 1.2e-17 93.6 125 52.0
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 1.2e-17 93.6 147 46.3
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.6e-17 93.2 66 72.7
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 1.6e-17 93.2 65 70.8
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 2.8e-17 92.4 119 52.1
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 2.8e-17 92.4 65 69.2
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 2.8e-17 92.4 65 69.2
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 4.7e-17 91.7 144 45.8
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 8.1e-17 90.9 56 80.4
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 8.1e-17 90.9 142 50.0
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.1e-16 90.5 66 69.7
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.1e-16 90.5 66 69.7
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.1e-16 90.5 66 68.2
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.1e-16 90.5 139 46.0
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 1.8e-16 89.7 135 50.4
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 3.1e-16 89.0 129 45.0
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 3.1e-16 89.0 122 47.5
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 4.0e-16 88.6 63 71.4
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 4.0e-16 88.6 145 43.4
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 5.2e-16 88.2 66 65.2
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 5.2e-16 88.2 66 65.2
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 5.2e-16 88.2 127 47.2
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.2e-15 87.0 61 70.5
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.2e-15 87.0 64 68.8
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.2e-15 87.0 119 50.4
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.5e-15 86.7 66 63.6
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 1.5e-15 86.7 64 70.3
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 1.5e-15 86.7 60 71.7
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 1.5e-15 86.7 138 48.6
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 3.4e-15 85.5 66 66.7
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 4.4e-15 85.1 66 62.1
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 4.4e-15 85.1 66 63.6
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 4.4e-15 85.1 66 62.1
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 4.4e-15 85.1 66 62.1
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 4.4e-15 85.1 136 42.6
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 5.8e-15 84.7 138 45.7
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 9.9e-15 84.0 106 48.1
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 9.9e-15 84.0 106 48.1
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 9.9e-15 84.0 106 48.1
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 9.9e-15 84.0 106 48.1
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 9.9e-15 84.0 106 48.1
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 1.3e-14 83.6 139 41.0
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 1.3e-14 83.6 66 60.6
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 1.3e-14 83.6 127 47.2
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 1.3e-14 83.6 137 47.4
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 1.7e-14 83.2 61 67.2
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 2.2e-14 82.8 106 48.1
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 2.2e-14 82.8 106 48.1
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 2.2e-14 82.8 140 46.4
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 2.2e-14 82.8 143 41.3
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 2.2e-14 82.8 111 48.6
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 2.9e-14 82.4 54 75.9
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 3.7e-14 82.0 61 65.6
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 3.7e-14 82.0 61 67.2
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 6.4e-14 81.3 62 62.9
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 6.4e-14 81.3 62 62.9
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 2.4e-13 79.3 59 64.4
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.2e-13 79.0 68 63.2
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 3.2e-13 79.0 58 65.5
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 4.1e-13 78.6 65 63.1
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 7.1e-13 77.8 61 65.6
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 7.1e-13 77.8 87 50.6
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 9.2e-13 77.4 67 62.7
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 9.2e-13 77.4 67 62.7
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 9.2e-13 77.4 67 62.7
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 2.1e-12 76.3 67 61.2
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 2.7e-12 75.9 123 46.3
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 3.5e-12 75.5 61 59.0
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 3.5e-12 75.5 96 43.8
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 7.8e-12 74.3 67 59.7
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.3e-11 73.6 63 60.3
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.3e-11 73.6 140 39.3
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 2.3e-11 72.8 130 43.1
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.3e-11 72.8 115 43.5
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.3e-11 72.8 115 43.5
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 2.3e-11 72.8 51 70.6
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 2.3e-11 72.8 66 56.1
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 3.9e-11 72.0 107 43.9
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 5.1e-11 71.6 55 63.6
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 5.1e-11 71.6 55 63.6
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 5.1e-11 71.6 143 43.4
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 6.6e-11 71.2 116 42.2
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.1e-10 70.5 120 44.2
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.5e-10 70.1 120 43.3
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.5e-10 69.3 90 45.6
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 5.6e-10 68.2 112 47.3
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 5.6e-10 68.2 122 41.0
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 7.3e-10 67.8 85 45.9
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 7.3e-10 67.8 55 58.2
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 2.8e-09 65.9 118 41.5
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.7e-09 65.1 118 39.0
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 6.2e-09 64.7 118 40.7
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 1.4e-08 63.5 72 47.2
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 3.1e-08 62.4 66 53.0
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 1.5e-07 60.1 105 41.0
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-07 60.1 105 41.0
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 1.5e-07 60.1 105 41.0
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 4.4e-07 58.5 59 47.5
Os01g0630300 Oryza sativa ssp. japonica HOM05D006973 ORTHO05D008636 1.7e-06 56.6 95 41.1
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 2.2e-06 56.2 111 38.7
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 2.9e-06 55.8 48 52.1
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 4.9e-06 55.1 48 52.1
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 8.4e-06 54.3 53 47.2


User provided reference genes

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