Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.4e-276 955.7 490 100.0
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 7.5e-270 933.3 490 97.1
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.7e-269 932.2 490 96.9
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 5.3e-268 927.2 494 94.5
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.2e-267 926.0 494 94.5
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 3.4e-254 881.3 490 89.6
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 6.8e-231 803.9 490 81.2
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 3.0e-218 761.9 490 76.3
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 5.3e-199 698.0 489 69.9
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 1.1e-193 680.2 496 66.7
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 8.2e-192 674.1 492 66.5
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 3.4e-190 668.7 496 66.7
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.1e-188 663.7 496 65.5
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 1.1e-188 663.7 496 65.5
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.6e-187 659.8 478 67.6
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 7.9e-187 657.5 496 67.1
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 1.3e-186 656.8 492 68.3
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 3.9e-186 655.2 449 69.7
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.1e-185 653.7 492 69.7
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 2.0e-182 642.9 532 63.3
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 3.4e-182 642.1 490 65.1
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 4.5e-182 641.7 492 65.4
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 1.3e-181 640.2 450 68.7
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 2.2e-181 639.4 492 65.7
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 2.9e-181 639.0 413 73.8
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.1e-180 637.1 492 65.7
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 1.4e-180 636.7 494 66.0
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.0e-178 630.6 492 64.2
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.1e-177 627.1 489 63.4
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 2.5e-177 625.9 443 69.5
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.7e-176 623.2 488 63.3
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 6.3e-176 621.3 381 75.9
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 2.4e-175 619.4 372 78.2
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 1.5e-174 616.7 495 63.4
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.0e-173 614.0 496 62.7
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.1e-172 610.5 396 71.0
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 1.9e-172 609.8 494 64.0
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.9e-172 609.8 449 67.7
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.2e-172 609.0 451 67.8
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 5.5e-172 608.2 492 61.2
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 9.4e-172 607.4 381 75.3
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 2.1e-171 606.3 400 71.8
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 2.1e-171 606.3 450 66.9
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 1.4e-170 603.6 401 71.3
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 1.8e-170 603.2 400 71.2
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.0e-170 602.4 508 61.0
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 6.7e-170 601.3 400 71.0
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 6.7e-170 601.3 490 61.6
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.1e-169 600.5 400 70.8
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.5e-169 600.1 507 60.7
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.5e-169 600.1 397 71.0
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.0e-169 599.7 400 70.8
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.6e-169 599.4 492 65.2
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 4.4e-169 598.6 400 70.5
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 1.3e-168 597.0 402 70.9
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 1.7e-168 596.7 492 62.8
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.7e-168 596.7 378 74.6
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 2.2e-168 596.3 493 63.1
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 3.7e-168 595.5 428 68.7
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 6.3e-168 594.7 451 66.3
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 8.2e-168 594.3 396 73.0
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.4e-167 593.6 401 68.3
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.8e-167 593.2 431 65.7
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.8e-167 593.2 409 67.7
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 7.0e-167 591.3 422 67.3
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 4.5e-166 588.6 422 67.1
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 1.0e-165 587.4 452 64.4
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 1.3e-165 587.0 408 70.8
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.7e-165 586.6 369 75.3
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 2.2e-165 586.3 453 64.0
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 2.9e-165 585.9 449 65.0
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 5.0e-165 585.1 401 69.8
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.1e-164 583.9 496 59.9
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.5e-164 583.6 496 61.7
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 2.5e-164 582.8 401 70.3
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 2.3e-162 576.2 487 60.6
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 4.4e-161 572.0 479 61.4
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 7.4e-161 571.2 465 60.9
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 1.3e-160 570.5 490 60.0
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 2.2e-160 569.7 395 71.9
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 2.4e-159 566.2 523 58.5
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 9.1e-159 564.3 386 70.2
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.6e-158 563.5 451 64.7
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 2.0e-158 563.1 386 67.9
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 5.9e-158 561.6 400 68.0
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 4.2e-156 555.4 400 70.0
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 2.2e-152 543.1 581 53.0
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 2.0e-150 536.6 432 62.0
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 1.7e-149 533.5 494 59.1
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 5.0e-149 531.9 368 66.6
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 1.5e-148 530.4 362 69.1
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 3.2e-148 529.3 362 68.8
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 4.7e-147 525.4 429 62.5
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 3.0e-146 522.7 488 58.2
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 3.4e-145 519.2 494 56.1
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 4.4e-145 518.8 356 68.8
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 4.1e-143 512.3 482 58.5
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.6e-142 510.4 482 58.3
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.4e-138 497.3 372 65.3
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 2.6e-137 493.0 272 80.9
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 3.4e-129 466.1 384 59.4
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.8e-129 465.3 339 65.2
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 4.9e-128 462.2 389 59.9
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 5.4e-119 432.2 361 56.8
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 7.6e-113 411.8 247 73.7
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.2e-110 404.4 288 63.2
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 8.4e-104 381.7 316 61.7
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 2.6e-97 360.1 252 67.5
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 8.4e-96 355.1 384 53.6
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 2.7e-94 350.1 240 70.0
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.8e-80 303.1 239 61.5
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 2.2e-72 277.3 307 45.3
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 6.5e-72 275.8 204 57.4
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 6.5e-72 275.8 204 57.4
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 4.2e-71 273.1 310 44.5
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.6e-70 271.2 204 56.4
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 7.9e-70 268.9 204 55.4
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 3.0e-53 213.8 210 51.4
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 5.7e-36 156.4 149 58.4
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.5e-33 147.1 98 59.2
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 1.7e-27 128.3 165 47.3
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 1.1e-18 99.0 101 57.4
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 1.6e-14 85.1 92 55.4
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 2.3e-13 81.3 267 22.8
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 3.1e-13 80.9 338 24.3
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.2e-12 79.0 283 23.7
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.2e-12 79.0 265 23.8
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 4.4e-12 77.0 269 22.7
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 9.8e-12 75.9 279 23.7
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 9.8e-12 75.9 293 21.8
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.7e-11 75.1 317 22.7
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 1.7e-11 75.1 273 23.1
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.2e-11 74.7 322 21.4
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 3.7e-11 73.9 243 22.6
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 3.7e-11 73.9 295 20.0
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 3.7e-11 73.9 295 20.0
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 6.4e-11 73.2 259 21.2
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 6.4e-11 73.2 270 21.1
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 8.3e-11 72.8 270 21.1
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.1e-10 72.4 273 20.5
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.1e-10 72.4 271 21.4
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.4e-10 72.0 330 21.8
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.9e-10 71.6 295 20.0
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 1.9e-10 71.6 275 22.9
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.2e-10 70.9 296 23.0
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 5.4e-10 70.1 268 20.9
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 5.4e-10 70.1 318 21.7
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 5.4e-10 70.1 162 24.1
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 7.0e-10 69.7 295 20.0
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.2e-09 68.9 292 21.9
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.2e-09 68.9 267 23.2
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 1.6e-09 68.6 268 21.3
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.0e-08 65.9 137 22.6


User provided reference genes

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