Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.8e-203 711.1 394 100.0
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.7e-201 703.7 394 98.5
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.7e-201 703.7 394 98.5
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 2.9e-200 701.8 394 98.2
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.2e-199 698.4 394 97.7
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.2e-199 698.4 394 97.7
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 9.5e-191 670.2 394 93.4
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 8.6e-176 620.5 394 87.1
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 3.1e-173 612.1 395 86.6
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.3e-168 596.7 394 83.2
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 2.8e-166 589.0 394 82.5
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 6.2e-166 587.8 394 82.2
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 1.8e-165 586.3 394 81.7
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 5.2e-165 584.7 394 82.2
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 4.4e-164 581.6 394 81.5
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 9.9e-164 580.5 394 82.0
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 1.7e-163 579.7 410 79.5
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 4.9e-163 578.2 394 79.2
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.1e-162 577.0 394 81.5
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.2e-161 573.5 394 78.7
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.6e-161 573.2 394 78.7
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 4.6e-161 571.6 394 79.9
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.0e-160 570.5 394 80.7
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 3.9e-160 568.5 395 80.0
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 5.1e-160 568.2 395 80.0
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 5.1e-160 568.2 394 79.4
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 6.6e-160 567.8 394 78.2
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.9e-159 566.2 394 79.9
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 5.6e-159 564.7 394 79.9
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 3.6e-158 562.0 394 79.4
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 4.7e-158 561.6 392 77.3
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.8e-157 559.7 394 77.2
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.4e-157 559.3 394 76.6
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 2.4e-157 559.3 397 78.8
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 3.1e-157 558.9 394 77.2
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 4.0e-157 558.5 394 76.4
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 2.0e-156 556.2 394 78.7
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 5.8e-156 554.7 394 78.4
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 9.9e-156 553.9 394 77.7
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 8.4e-155 550.8 395 78.7
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.4e-154 550.1 404 77.5
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 5.4e-154 548.1 394 77.4
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 7.1e-154 547.7 395 73.4
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 7.1e-154 547.7 394 77.9
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.2e-153 547.0 438 72.8
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 7.8e-153 544.3 394 76.4
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 1.0e-152 543.9 394 73.9
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.3e-152 543.5 394 72.1
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 1.3e-152 543.5 394 71.1
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 2.3e-152 542.7 395 72.7
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 3.9e-152 542.0 395 72.4
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 5.1e-152 541.6 395 77.5
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 6.6e-152 541.2 397 72.8
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 8.7e-152 540.8 370 80.8
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 8.7e-152 540.8 417 74.1
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 1.9e-151 539.7 394 72.8
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 3.3e-151 538.9 395 72.4
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 7.3e-151 537.7 394 73.9
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 8.1e-150 534.3 396 74.5
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.1e-149 533.9 378 77.0
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.4e-149 533.5 394 77.2
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 3.1e-149 532.3 398 76.4
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 4.0e-149 531.9 394 74.9
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 6.9e-149 531.2 398 76.1
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 6.9e-149 531.2 395 77.0
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 9.0e-149 530.8 394 75.6
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.5e-148 530.0 395 72.2
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.5e-148 530.0 370 80.0
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.0e-148 529.6 394 76.6
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.6e-148 529.3 395 71.9
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.3e-147 526.9 394 75.9
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 2.2e-147 526.2 395 71.6
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-147 526.2 395 71.6
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 3.8e-147 525.4 400 71.2
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.1e-146 523.9 394 75.6
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 7.1e-146 521.2 395 67.6
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 1.0e-144 517.3 394 70.6
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 3.0e-144 515.8 395 76.2
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 3.3e-143 512.3 394 66.8
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 9.6e-143 510.8 409 73.6
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.1e-141 507.3 395 73.7
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.4e-141 506.9 379 71.2
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.5e-140 503.4 394 74.1
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 4.9e-139 498.4 393 73.0
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 4.9e-139 498.4 394 73.1
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 6.4e-139 498.0 395 71.4
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 9.3e-138 494.2 406 70.9
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 2.7e-137 492.7 426 69.0
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 2.1e-134 483.0 395 69.9
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.7e-131 473.4 398 68.8
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 1.6e-129 466.8 401 68.6
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 4.6e-129 465.3 404 63.9
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.3e-127 458.8 358 68.7
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 9.7e-127 457.6 394 70.8
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 4.8e-126 455.3 394 62.4
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.0e-123 447.6 372 70.4
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 2.1e-113 413.3 394 56.3
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-112 410.2 381 60.9
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 3.4e-108 396.0 346 70.2
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 7.2e-98 361.7 394 51.3
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 8.8e-96 354.8 285 74.0
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 1.1e-93 347.8 396 52.5
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.8e-93 347.1 398 50.3
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 3.8e-91 339.3 396 50.0
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.5e-90 337.4 328 64.9
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 9.4e-90 334.7 247 70.9
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 2.3e-80 303.5 302 58.3
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 2.2e-78 297.0 295 56.9
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 5.2e-72 275.8 378 46.0
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 3.5e-68 263.1 182 71.4
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 6.0e-68 262.3 390 51.8
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.0e-67 261.5 182 70.9
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 2.8e-57 226.9 292 47.9
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.2e-52 211.5 540 31.9
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 7.3e-50 202.2 205 56.6
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.2e-49 201.4 153 73.9
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.6e-49 201.1 122 82.8
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 2.9e-46 190.3 165 61.2
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 4.9e-46 189.5 418 31.3
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.2e-44 184.9 125 76.8
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 8.7e-43 178.7 413 34.1
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 2.8e-41 173.7 393 32.6
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 5.8e-39 166.0 166 53.6
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 5.1e-35 152.9 92 81.5
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 6.4e-30 136.0 128 57.0
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 3.2e-29 133.7 71 84.5
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.2e-28 131.7 88 78.4
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 1.6e-28 131.3 125 62.4
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 2.3e-27 127.5 95 71.6
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 2.8e-25 120.6 151 45.7
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 5.3e-24 116.3 147 42.9
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 6.9e-24 115.9 125 51.2
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 6.9e-24 115.9 88 64.8
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.2e-23 115.2 113 55.8
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 1.3e-22 111.7 178 52.8
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 2.1e-20 104.4 80 72.5
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.3e-19 100.9 77 62.3
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 1.1e-18 98.6 50 86.0
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 3.1e-16 90.5 51 86.3
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 5.8e-15 86.3 44 95.5
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.6e-12 78.2 112 43.8
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.6e-12 78.2 49 63.3
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 7.9e-12 75.9 46 82.6
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 3.3e-10 70.5 47 70.2
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 7.4e-10 69.3 35 97.1
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 8.2e-09 65.9 38 84.2


User provided reference genes

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