Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.0e-61 238.4 127 100.0
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.6e-57 225.3 125 88.8
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 2.4e-55 218.8 126 93.7
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 8.7e-53 210.3 125 83.2
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 4.2e-47 191.4 122 88.5
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 1.6e-43 179.5 111 91.9
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.0e-41 172.6 111 89.2
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.0e-37 158.7 126 69.8
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 8.7e-37 157.1 111 74.8
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.8e-19 99.0 55 85.5
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 1.1e-18 97.1 55 83.6
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 1.4e-18 96.7 54 87.0
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.4e-18 95.9 55 83.6
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 9.0e-18 94.0 55 87.3
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-17 93.6 55 80.0
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 6.5e-16 87.8 55 76.4
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 2.1e-14 82.8 54 72.2
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 2.3e-13 79.3 54 68.5
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 3.0e-13 79.0 55 65.5
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 3.9e-13 78.6 55 63.6
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 5.1e-13 78.2 54 64.8
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 6.7e-13 77.8 55 67.3
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 1.1e-12 77.0 55 63.6
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 1.1e-12 77.0 55 60.0
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 1.1e-12 77.0 55 61.8
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 1.1e-12 77.0 55 60.0
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 1.5e-12 76.6 55 61.8
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 1.5e-12 76.6 55 63.6
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 1.9e-12 76.3 45 80.0
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 2.5e-12 75.9 55 60.0
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 2.5e-12 75.9 55 60.0
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.5e-12 75.9 55 58.2
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 2.5e-12 75.9 54 64.8
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 3.3e-12 75.5 55 60.0
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 4.3e-12 75.1 55 60.0
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 4.3e-12 75.1 55 61.8
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 4.3e-12 75.1 55 60.0
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 5.7e-12 74.7 55 63.6
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 7.4e-12 74.3 55 60.0
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 7.4e-12 74.3 55 60.0
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 7.4e-12 74.3 55 60.0
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 9.7e-12 73.9 55 50.9
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 9.7e-12 73.9 55 61.8
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 9.7e-12 73.9 55 58.2
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.3e-11 73.6 55 60.0
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 1.3e-11 73.6 55 52.7
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.3e-11 73.6 55 58.2
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 1.3e-11 73.6 55 58.2
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 1.3e-11 73.6 55 63.6
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 1.7e-11 73.2 55 56.4
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 1.7e-11 73.2 55 61.8
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 2.2e-11 72.8 55 58.2
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 2.2e-11 72.8 67 52.2
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 2.2e-11 72.8 69 50.7
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 2.2e-11 72.8 55 58.2
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 2.2e-11 72.8 55 58.2
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 2.8e-11 72.4 55 58.2
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 3.7e-11 72.0 55 58.2
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 4.8e-11 71.6 55 50.9
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 4.8e-11 71.6 55 60.0
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 4.8e-11 71.6 55 54.5
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 4.8e-11 71.6 55 56.4
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 6.3e-11 71.2 55 58.2
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 8.2e-11 70.9 55 56.4
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 8.2e-11 70.9 55 56.4
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 1.1e-10 70.5 55 54.5
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.1e-10 70.5 55 56.4
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 1.1e-10 70.5 55 56.4
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.1e-10 70.5 55 58.2
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.1e-10 70.5 55 58.2
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 1.1e-10 70.5 55 52.7
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 1.4e-10 70.1 55 56.4
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 1.8e-10 69.7 55 58.2
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 2.4e-10 69.3 55 52.7
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 2.4e-10 69.3 54 55.6
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 5.3e-10 68.2 55 54.5
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 5.3e-10 68.2 54 55.6
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 6.9e-10 67.8 67 49.3
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 6.9e-10 67.8 55 54.5
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 6.9e-10 67.8 55 54.5
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 9.1e-10 67.4 55 50.9
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 9.1e-10 67.4 55 54.5
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 9.1e-10 67.4 55 54.5
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 9.1e-10 67.4 54 55.6
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 1.2e-09 67.0 55 56.4
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 1.2e-09 67.0 55 56.4
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 1.2e-09 67.0 55 50.9
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 2.0e-09 66.2 55 52.7
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 2.0e-09 66.2 55 52.7
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.6e-09 65.9 55 52.7
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.6e-09 65.9 55 52.7
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 2.6e-09 65.9 55 56.4
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 5.9e-09 64.7 68 51.5
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 5.9e-09 64.7 54 53.7
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 1.0e-08 63.9 55 47.3
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.7e-08 63.2 55 47.3
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.7e-08 63.2 55 47.3
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.7e-08 63.2 58 48.3
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 2.9e-08 62.4 55 45.5
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 1.9e-07 59.7 55 47.3
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 4.2e-07 58.5 58 46.6
FvH4_2g12781 Fragaria vesca HOM05D004953 ORTHO05D196320 5.5e-07 58.2 30 90.0
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 7.2e-07 57.8 63 55.6
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.2e-06 57.0 49 49.0
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 2.7e-06 55.8 55 45.5
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.6e-06 55.5 49 49.0
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.7e-06 55.1 52 48.1


User provided reference genes

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